mRNA_E_fasciculatus_S2_contig860.16725.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig860.16725.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP2_ECTSI) HSP 1 Score: 750 bits (1936), Expect = 1.160e-260 Identity = 396/464 (85.34%), Postives = 410/464 (88.36%), Query Frame = 1
Query: 28 MAPWAEPNPREGHFEELGNSLLESSSEEGDDQEDEGRCAIDEESTE-IAALRRRRAYIIAQLHNVGQSIRETEAEVLAGKCVPEISKRDLAPQDTVDESKTGSFLHAVNWSAGTDDGPGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGTVSFNGSLTKSGFVGHRRMVEPDHPLEVDLLSMGIDLLPESLQRWLRAKNVFDRIDAEGVSAATERGERGAKSQGEHDGNVDRREAQLLLADTGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRLAHTQALSRTAVNDAQRIYRTAWLSWFMSGRAKEERETSWLEKNLIRLKTRLYRGFRACYSLVGRPRRVLEELVQQGLIS---------------------SNLLARFKGSDARATLRAAVGDAEDDGSGFSISLNFLHKGN 1353
MAPWAE NP EG F++LGNSLLESS IAALRRRRAYIIAQLHNVGQSIRETEAEVLAGKCVPEISKRDLAPQDTVDESKTGSFLHAVNWSAGTDDGPGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGG VSF+G LT+SGFVGHRRMVE DHPLEVDLL+MG+DLLPESLQRWLR KN FDRIDAEGVSAATERGERGAKS+G++DG+VDR EAQLLLAD GEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRLAHTQALSR+AVNDAQRIYRTAWLSWFMSGRAKEERETSWLEKNLIRLKTRLYRGFRACYSLVGRPRRVLEELVQQGLIS +NLLA FKGSDARATLRAA+GDAEDDGSGFS+SLNFLHKGN
Sbjct: 1 MAPWAELNPGEGRFDQLGNSLLESSXXXXXXXXXXXXXXXXXXXXXXIAALRRRRAYIIAQLHNVGQSIRETEAEVLAGKCVPEISKRDLAPQDTVDESKTGSFLHAVNWSAGTDDGPGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGAVSFDGCLTQSGFVGHRRMVEADHPLEVDLLTMGLDLLPESLQRWLRVKNAFDRIDAEGVSAATERGERGAKSRGDYDGSVDRGEAQLLLADAGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRLAHTQALSRSAVNDAQRIYRTAWLSWFMSGRAKEERETSWLEKNLIRLKTRLYRGFRACYSLVGRPRRVLEELVQQGLISCTSLILNPTGRFDDVTLYGVAANLLAPFKGSDARATLRAAIGDAEDDGSGFSVSLNFLHKGN 464
BLAST of mRNA_E_fasciculatus_S2_contig860.16725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP1_ECTSI) HSP 1 Score: 408 bits (1048), Expect = 2.360e-130 Identity = 259/361 (71.75%), Postives = 263/361 (72.85%), Query Frame = 1
Query: 1708 QILESSTLVLNDRLKVSISAEGCFCGPLVSKLLEETLASMIDNVQQAVADSAEHDVGRVEREARTQKNAPGMRHPLVVPKRRVAGSVREGRGGGLPGGGIGGVGQKKSGXXXXXXXXXXATITPTRGRLLTEREKRFQDTKTSKWLDRMWAFAAKLRGAKAFALDFEASSPLEFLESSWARAYLPASWRSQEAFTTPGFAAGWFASWKGSFLSQASALGGGAREHLQRMRARQEAAAERAAAVADTEEGQKLXXXXXELRLLGVSKALLAQAMEEKEEETVRRLREAKDKQMEEYAELEDALLACTKYLLGPRELRIQSGPNVLVAEFQGLDILDALSAARHQGXXXXXXXXXXXGSTDST 2790
+ILES TLVL+DRLKVSISAEGCFCGPLVSKLLEETLASMIDNV+QAVADSAEHDVGRVEREARTQKNAPGMRHPLVVPKRRVAGSVREGRG GLPGGG GGVGQKKS A ITPTRGRLLTER KRFQDTKTSKWLDRMWAFAAKLRGAKAFALD EASSPLEFLESSWARA XXXXX VSKALLA+AM EKEEETVRRLREAKDKQMEEYAELEDALLACTKYLLGPRELRIQSG NVLVAEFQGLDILDALSAARH G XXXXXXXXXGSTDST
Sbjct: 4 EILESRTLVLDDRLKVSISAEGCFCGPLVSKLLEETLASMIDNVRQAVADSAEHDVGRVEREARTQKNAPGMRHPLVVPKRRVAGSVREGRGAGLPGGGSGGVGQKKSESSGGTSAEMAAIITPTRGRLLTERGKRFQDTKTSKWLDRMWAFAAKLRGAKAFALDLEASSPLEFLESSWARAXXXXXXXXXXXXXXXXXXX-----------------------------------------------XXXXXXXXXXXXXXXVSKALLAEAMGEKEEETVRRLREAKDKQMEEYAELEDALLACTKYLLGPRELRIQSGHNVLVAEFQGLDILDALSAARHPGGEXXXXXXXXXGSTDST 317
BLAST of mRNA_E_fasciculatus_S2_contig860.16725.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BVW4_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 7.610e-15 Identity = 65/206 (31.55%), Postives = 97/206 (47.09%), Query Frame = 1
Query: 376 PGPKPLTDRAMDRARALLRLFDADGDGCLSFDEFRAYLVRLGRDKGKLGERLTTNREFWLSYVADQAGPPAAADVGGTVSFNGSLTKSGFVGHRRMVEPDHPLEVDLLSMGIDLLPESLQRWLRAKNVFDRIDAEGVSAATERGERGAKSQGEHDGNVDRREAQLLLADTGEVMSKLRVEEELTLATMHAKLMLEVVEERRKRNRL 993
P + T R D+ L F G +++ +FR YL L R + + + E W SY+ D G A G LT F+ +R +E +PLE DLLS+G+ LLP++L W + + FDR+ EG++ E ++ E+ N R E QL D GE+MS + E LT +M E++ RK +RL
Sbjct: 70 PRTETFTVRGADKVHELYERF-CSVPGRMTYFDFRGYLHALRR-LDEFDPHIIDSEEAWRSYMTDMFGTDEA----------GGLTPGQFLAYREWIESQYPLEADLLSIGLPLLPDTLIAWKQCEAAFDRLADEGITE--EEKFMLLRAGEEYISNFPRCEFQLFAYDNGEIMSDMECERLLTTHQDRLAVMCELLGRHRKASRL 261 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig860.16725.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig860.16725.1 >prot_E_fasciculatus_S2_contig860.16725.1 ID=prot_E_fasciculatus_S2_contig860.16725.1|Name=mRNA_E_fasciculatus_S2_contig860.16725.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=931bp MKSSAAPTVMAPWAEPNPREGHFEELGNSLLESSSEEGDDQEDEGRCAIDback to top mRNA from alignment at E_fasciculatus_S2_contig860:7899..22262+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig860.16725.1 ID=mRNA_E_fasciculatus_S2_contig860.16725.1|Name=mRNA_E_fasciculatus_S2_contig860.16725.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=14364bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig860:7899..22262+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig860:7899..22262+ >mRNA_E_fasciculatus_S2_contig860.16725.1 ID=mRNA_E_fasciculatus_S2_contig860.16725.1|Name=mRNA_E_fasciculatus_S2_contig860.16725.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2793bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig860:7899..22262+ (Ectocarpus fasciculatus EfasUO2)back to top |