mRNA_E_fasciculatus_S2_contig8594.16716.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8594.16716.1
Unique NamemRNA_E_fasciculatus_S2_contig8594.16716.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8594.16716.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL2_ECTSI)

HSP 1 Score: 546 bits (1406), Expect = 4.060e-192
Identity = 293/377 (77.72%), Postives = 330/377 (87.53%), Query Frame = 1 
Query:   13 RGRWVEGRDTGLEEDGVEEGVVTVWKRENEKEQVDLGGKPTVGGCEVGQSSSRPSPSPSSPSSSLDGMQGGRPCWPQSPWLASLWNKKKTSGKATGDDAKAGNRFEVIAEESMNAAIRDQEMKRQAVDKAHTMESSARHRLEMEKSIKDDIHERLHGCWQQCLQPTKLELHQLEQALDGCSEVLPSAEESARSXXXXXXXAESIYALVRHSASHARQAHESAREQVLFPPLLCDDYGALLRAQHGTREALAKAVESVKKARGQVEGARAAVKNAVDIIGIEPFRRVFLADKIAEAKSRHEEVNTNYEALEVERKRALSKEKRAAATYQVAAIRDGAAIIAFQAAQRQTARTRATFSLLACGRGGSKRGEAEMFLAHK 1143
            R RW EG DT LEEDGVEEGV T+WKRENEKE V LGGKPTVGGCEV  SSSRPSP  SS  SSLDG QGGRPCWPQSPWL+S+ ++KK  G+     A AGNRFEVIAEES+NAA+RDQE+KR+ +D+AHT+ES ARHRLEM KS K+DI+ERL GCWQ+CL+PTKLELH+LE+ LD CS+VLP+AEESAR        AE+IYALVRHSASHA+QAHESARE+VLFPPLLCDDYGALLRAQH TREALAKA++SVK ARGQVEGARAAVKNAV+I+G+EPFRR FLADK+AEAK RH+EVNTNYEALEVERKRA++KEK+AAATY+ AAIRDGAA+IAFQAAQRQTARTRATFSLL CGRGGSKRGEAE FL  +
Sbjct:    7 RKRWEEGHDTELEEDGVEEGVKTLWKRENEKEGVVLGGKPTVGGCEVDGSSSRPSPLSSS--SSLDGTQGGRPCWPQSPWLSSVGSRKKKGGEEAA--AGAGNRFEVIAEESINAAMRDQEVKRRVMDEAHTVESGARHRLEMAKSTKNDIYERLQGCWQRCLEPTKLELHRLEKMLDDCSDVLPTAEESARRARDVARSAENIYALVRHSASHAKQAHESAREEVLFPPLLCDDYGALLRAQHRTREALAKAIQSVKNARGQVEGARAAVKNAVEIVGVEPFRRAFLADKVAEAKRRHKEVNTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAMIAFQAAQRQTARTRATFSLLTCGRGGSKRGEAERFLVRE 379
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BLAST of mRNA_E_fasciculatus_S2_contig8594.16716.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW7_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 2.580e-129
Identity = 203/262 (77.48%), Postives = 233/262 (88.93%), Query Frame = 1 
Query:  361 IRDQEMKRQAVDKAHTMESSARHRLEMEKSIKDDIHERLHGCWQQCLQPTKLELHQLEQALDGCSEVLPSAEESARSXXXXXXXAESIYALVRHSASHARQAHESAREQVLFPPLLCDDYGALLRAQHGTREALAKAVESVKKARGQVEGARAAVKNAVDIIGIEPFRRVFLADKIAEAKSRHEEVNTNYEALEVERKRALSKEKRAAATYQVAAIRDGAAIIAFQAAQRQTARTRATFSLLACGRGGSKRGEAEMFLAHKE 1146
            +RDQE+KR+++D AHT+ES ARHRLEM K+ K+DIHERL GC Q+CL+PTK+ELH+LE+ LD CS+VLP+AEESAR        AESIY LVRHSASHARQAHESARE+VLFPPLLCDDYGALLRAQH TREAL K++ESVK ARGQVEGARAAVKNAV+ IG+EPF+R FLADK+ EAK R++EV+TNYEALEVERKRA++KEK+AAATY+ AAIRDGAAIIAFQAAQRQTART ATFSLL CGRGGSKRGEAE FLA +E
Sbjct:    1 MRDQEVKRRSMDDAHTVESDARHRLEMAKNTKNDIHERLQGCRQRCLEPTKMELHRLEKMLDDCSDVLPTAEESARRARDVARSAESIYTLVRHSASHARQAHESAREEVLFPPLLCDDYGALLRAQHRTREALVKSIESVKNARGQVEGARAAVKNAVESIGVEPFKRAFLADKVVEAKRRYKEVSTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAIIAFQAAQRQTARTLATFSLLTCGRGGSKRGEAERFLAREE 262
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8594.16716.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.060e-19277.72protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized2.580e-12977.48protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8594contigE_fasciculatus_S2_contig8594:4065..6536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size1206
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003550.1
Cds size1206
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842517.330381-CDS-E_fasciculatus_S2_contig8594:4064..42831696842517.330381-CDS-E_fasciculatus_S2_contig8594:4064..4283Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8594 4065..4283 +
1696842517.3447313-CDS-E_fasciculatus_S2_contig8594:4602..48141696842517.3447313-CDS-E_fasciculatus_S2_contig8594:4602..4814Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8594 4603..4814 +
1696842517.3593442-CDS-E_fasciculatus_S2_contig8594:5177..55931696842517.3593442-CDS-E_fasciculatus_S2_contig8594:5177..5593Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8594 5178..5593 +
1696842517.370732-CDS-E_fasciculatus_S2_contig8594:6177..65361696842517.370732-CDS-E_fasciculatus_S2_contig8594:6177..6536Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8594 6178..6536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8594.16716.1prot_E_fasciculatus_S2_contig8594.16716.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8594 4065..6536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8594.16716.1

>prot_E_fasciculatus_S2_contig8594.16716.1 ID=prot_E_fasciculatus_S2_contig8594.16716.1|Name=mRNA_E_fasciculatus_S2_contig8594.16716.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=402bp
RARRRGRWVEGRDTGLEEDGVEEGVVTVWKRENEKEQVDLGGKPTVGGCE
VGQSSSRPSPSPSSPSSSLDGMQGGRPCWPQSPWLASLWNKKKTSGKATG
DDAKAGNRFEVIAEESMNAAIRDQEMKRQAVDKAHTMESSARHRLEMEKS
IKDDIHERLHGCWQQCLQPTKLELHQLEQALDGCSEVLPSAEESARSARD
VARSAESIYALVRHSASHARQAHESAREQVLFPPLLCDDYGALLRAQHGT
REALAKAVESVKKARGQVEGARAAVKNAVDIIGIEPFRRVFLADKIAEAK
SRHEEVNTNYEALEVERKRALSKEKRAAATYQVAAIRDGAAIIAFQAAQR
QTARTRATFSLLACGRGGSKRGEAEMFLAHKEEGEEGEEGEEGEGGEEGE
EE
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mRNA from alignment at E_fasciculatus_S2_contig8594:4065..6536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8594.16716.1 ID=mRNA_E_fasciculatus_S2_contig8594.16716.1|Name=mRNA_E_fasciculatus_S2_contig8594.16716.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2472bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8594:4065..6536+ (Ectocarpus fasciculatus EfasUO2)
CGGGCACGTAGGAGGGGGCGTTGGGTAGAAGGGCGCGACACTGGACTTGA
AGAGGACGGCGTTGAGGAAGGGGTGGTGACCGTTTGGAAGCGAGAGAACG
AGAAAGAGCAAGTTGATTTGGGTGGAAAGCCGACAGTGGGTGGTTGCGAA
GTTGGTCAAAGCTCGTCGCGACCGTCCCCGTCCCCGTCCTCGCCCTCGTC
ATCTCTCGATGGAATGCAGGTCCGCAGCGCTTCTGACAAGGGCAGTCTAC
CTACAGTAGTACCAATGCACGAGGATAGTACCAGCGTATAGAAAACAGCA
ATATACTGTAGATAGAGTGAACCTTTCGCCTACATGTAGCACACTTTTAA
TTCAGGCGAGGCGTGAGCATGTCGAACAAGGCGACGACCTCGTCGACGGC
TAAGTTCAAAACGTTGGAAGCAACACTTCACAAATGATATATTCGATTGA
TTGTCTCCGGGACAAAAAAGAACCAAAGATTATGCGCACCCTCCTCTTCC
CTCTCGTGCGATACCCTCTCTGCGCTTGAAAACGCCAGGGCGGTCGTCCA
TGCTGGCCGCAGAGCCCATGGCTAGCTTCCCTCTGGAACAAAAAAAAAAC
TAGCGGTAAGGCAACCGGCGACGATGCCAAAGCCGGGAACCGCTTCGAAG
TCATCGCAGAGGAATCAATGAACGCCGCGATCCGGGACCAAGAGATGAAG
CGACAGGCTGTAGACAAGGCGCACACGATGGAGTCCAGCGCTCGGCACAG
GTCAGTCAGCGGTGGGGCGACACCACGGAACTTTGCACGACCTTGGTCGC
TGGGCGATTCTTCTGAGGAGTGCCTACCCATCGGCTTCACTGATGTTGCC
GTCACCGACCCGCCAATTATTGCAGGCACACCTGTCCCCTGGCGTTCCAA
ACTACAGAGAAAAATCGCGATACCTGCGAAAATATCGTCATGATACTCTT
TTGTCGATTCTAGAACGGTATCAGCAGGGGCTACTGGCGGCGGCAGTACC
GTGGGGTGAAGCGCGTTGTTGGATCGCCTACAACACGCGTCGTTTGAAAC
CACAGACTACGATGAGCAGAGCATAACACACACATACGAACATTGTCACC
ACCACCACCACAGGCTAGAGATGGAGAAGAGTATCAAGGACGACATACAC
GAACGGCTGCACGGCTGCTGGCAGCAGTGTCTTCAACCCACGAAGCTGGA
GCTGCACCAGCTGGAGCAAGCGTTGGACGGCTGCTCCGAGGTCTTGCCAA
GCGCCGAGGAGAGCGCCAGGAGCGCGAGAGACGTGGCCCGCAGCGCCGAG
AGCATCTACGCCCTGGTGCGCCACAGCGCGTCCCACGCGAGGCAGGCGCA
CGAGTCCGCCCGAGAGCAAGTCCTCTTCCCCCCGCTGCTGTGCGACGACT
ACGGAGCGCTCTTGAGGGCGCAGCACGGCACGCGGGAGGCGCTGGCGAAG
GCCGTTGAATCCGTGAAGAAAGCCCGGGGGCAGGTGGAGGGGGCGAGGGC
GGCGGTCAAGAACGCGGTGGACATCATCGGTGGGTCTTTTTGTCCTCATG
AGTCGTGTCCTCGAGTTGCCACTACGGGTCCGGGGTGTTGTCTAAGCGGG
CTTCATGATATCATTGCTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGC
TGGTGCTGTGGTTGAGGATGATGATGGCGTGGCTGTGGGTTTTTCGGCTC
TAGGCGTGAGAATATGGTTTTCCGAAAGCGCATCGAGCTTGTCTGGAAGT
GTTAAACTACAGGACAGACGTTTGACTATATGCTGTTCCCTGCACAACCC
CGTCATTGCGGCAACGATATCGTGAGAGACATGTTCGCGCGCCAACGATA
TAATAAACCCGCACCATTCCGCATCATGAGCCCCCACGTACACCACTCGG
AAAGTGAGAGAGACAAATTTCCGATGTATTGCATTAAAAACTTTTGCTTG
CTGCCGTTGCCTTCACCATTCCGACAAGAAAATCACCGGGCGTCGCTAGT
CGTTCGCTTTCGCCTTTTTTTCTGTCCGTCTGTTTGTTTGTGTTGTACAA
CCCCGGCACTTTGAGCGAACCACCAAACAACCAAAGTCCGCACGAAAACA
CACCCCACCGCAGGCATTGAGCCGTTTAGACGGGTCTTCTTGGCCGACAA
AATCGCCGAGGCCAAGAGCCGGCACGAGGAGGTCAACACGAACTACGAAG
CCCTCGAGGTTGAGCGCAAGCGGGCTCTAAGCAAGGAAAAGAGGGCGGCG
GCAACGTACCAGGTGGCCGCGATTCGGGATGGGGCAGCCATAATCGCGTT
TCAGGCCGCACAGCGTCAAACGGCGAGAACCCGCGCCACTTTCAGCCTGC
TGGCTTGCGGACGCGGTGGGAGCAAGCGCGGCGAAGCGGAAATGTTCCTG
GCGCATAAGGAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGAAGGGGAGGG
GGGGGAGGAAGGGGAGGAGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8594:4065..6536+

>mRNA_E_fasciculatus_S2_contig8594.16716.1 ID=mRNA_E_fasciculatus_S2_contig8594.16716.1|Name=mRNA_E_fasciculatus_S2_contig8594.16716.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1206bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8594:4065..6536+ (Ectocarpus fasciculatus EfasUO2)
CGGGCACGTAGGAGGGGGCGTTGGGTAGAAGGGCGCGACACTGGACTTGA
AGAGGACGGCGTTGAGGAAGGGGTGGTGACCGTTTGGAAGCGAGAGAACG
AGAAAGAGCAAGTTGATTTGGGTGGAAAGCCGACAGTGGGTGGTTGCGAA
GTTGGTCAAAGCTCGTCGCGACCGTCCCCGTCCCCGTCCTCGCCCTCGTC
ATCTCTCGATGGAATGCAGGGCGGTCGTCCATGCTGGCCGCAGAGCCCAT
GGCTAGCTTCCCTCTGGAACAAAAAAAAAACTAGCGGTAAGGCAACCGGC
GACGATGCCAAAGCCGGGAACCGCTTCGAAGTCATCGCAGAGGAATCAAT
GAACGCCGCGATCCGGGACCAAGAGATGAAGCGACAGGCTGTAGACAAGG
CGCACACGATGGAGTCCAGCGCTCGGCACAGGCTAGAGATGGAGAAGAGT
ATCAAGGACGACATACACGAACGGCTGCACGGCTGCTGGCAGCAGTGTCT
TCAACCCACGAAGCTGGAGCTGCACCAGCTGGAGCAAGCGTTGGACGGCT
GCTCCGAGGTCTTGCCAAGCGCCGAGGAGAGCGCCAGGAGCGCGAGAGAC
GTGGCCCGCAGCGCCGAGAGCATCTACGCCCTGGTGCGCCACAGCGCGTC
CCACGCGAGGCAGGCGCACGAGTCCGCCCGAGAGCAAGTCCTCTTCCCCC
CGCTGCTGTGCGACGACTACGGAGCGCTCTTGAGGGCGCAGCACGGCACG
CGGGAGGCGCTGGCGAAGGCCGTTGAATCCGTGAAGAAAGCCCGGGGGCA
GGTGGAGGGGGCGAGGGCGGCGGTCAAGAACGCGGTGGACATCATCGGCA
TTGAGCCGTTTAGACGGGTCTTCTTGGCCGACAAAATCGCCGAGGCCAAG
AGCCGGCACGAGGAGGTCAACACGAACTACGAAGCCCTCGAGGTTGAGCG
CAAGCGGGCTCTAAGCAAGGAAAAGAGGGCGGCGGCAACGTACCAGGTGG
CCGCGATTCGGGATGGGGCAGCCATAATCGCGTTTCAGGCCGCACAGCGT
CAAACGGCGAGAACCCGCGCCACTTTCAGCCTGCTGGCTTGCGGACGCGG
TGGGAGCAAGCGCGGCGAAGCGGAAATGTTCCTGGCGCATAAGGAGGAGG
GGGAGGAGGGGGAGGAGGGGGAGGAAGGGGAGGGGGGGGAGGAAGGGGAG
GAGGAG
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