mRNA_E_fasciculatus_S2_contig859.16709.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig859.16709.1
Unique NamemRNA_E_fasciculatus_S2_contig859.16709.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 1146 bits (2965), Expect = 0.000e+0
Identity = 752/871 (86.34%), Postives = 759/871 (87.14%), Query Frame = 1
Query:    1 MSSTEERRTSARQRRVRPTAHSSALESLRAARDGLESRTEQHEDXXXXXXXXXXXXXXXXXXXXXXXXDDFVVDDDGLGYADDGEEFIEKADGSEGAAGGRGDKGGGRKGVNGKINADSLRRKARKLNQLGDEASQAGGGIKKFLRTGGGSTVGPSALSRNSSAAPGARRGGGAGAGGALNLDDMLSDLTSNPIADLAPGNGNSXXXXXXXXXXXAMPLSKRKRGLVTPQSARSRRSYGSTASRGSSSAGSAS--RRPPVPSAWTVRDYEDDPGASGDGDNDIVGDDVGGFEHFDGEEDANDAGDVAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEKELAAVVSPEAPATAAAPVAVAA---AAKPRSRFARMKETNNIAVTAAAEAALRPKIVEEKPAAXXXXXXXXGKGGEGKGSYMPSLEFQGPQYSLSEAPSTPAGSVASASSWLQKDETGEFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSAS--PQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGG--AKRADIGAVYQEMASVLVPRVIKRNAKGEQFR-RPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK 2583
            MS TEERRTSARQRRVRPTAHSSALESLRAARDGLESRTEQHEDXXXXXXXXXXXXXXXXXXXXXXXXDDFVVDDDGLGYADDGEEFIEKADGSEGAAG RGDKGGGRKGVNGKI ADSLRRKARKLNQLGDEASQAGGGIKKFLRTGGGSTVGPSALSRNS                 LNLDDMLSDLTSNPIADLAPGNGNSXXXXXXXXXXX  PLS+RKRGLVTPQSARSRRSYGSTASR           RRPPVPSAWTVRDYEDDPGASGDG     GDDVGGFEHFDGEEDA D GD AM         XXXXXXXXXXXXXXXXXXXXXX                             +AKPRSRFARMKETN+IAVTAAAEAALRPK VEEKPAA         K GEGKGSYMPSLEFQGPQYSLSEAPSTPAGSVASASSWLQKDETGEFMRMFWLDATEQNGTIYLIGKVAVPS SSGSAS  PQGDSGA  GTTFLSACVAVHSIEREVLVLPRLVEKDG+ SDGDED GGGG  AKRADIGAVYQEMASVLVPRVIKRNAKGEQFR +PVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAE+VA+           XXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFF KLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK
Sbjct:    1 MSGTEERRTSARQRRVRPTAHSSALESLRAARDGLESRTEQHEDXXXXXXXXXXXXXXXXXXXXXXXXDDFVVDDDGLGYADDGEEFIEKADGSEGAAG-RGDKGGGRKGVNGKIKADSLRRKARKLNQLGDEASQAGGGIKKFLRTGGGSTVGPSALSRNSXXXXXXXXXXXXXXXXGLNLDDMLSDLTSNPIADLAPGNGNSXXXXXXXXXXXXXPLSRRKRGLVTPQSARSRRSYGSTASRXXXXXXXXXXXRRPPVPSAWTVRDYEDDPGASGDG-----GDDVGGFEHFDGEEDAGD-GDAAMEDASDSIIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKPRSRFARMKETNDIAVTAAAEAALRPKTVEEKPAAAAAAVR---KDGEGKGSYMPSLEFQGPQYSLSEAPSTPAGSVASASSWLQKDETGEFMRMFWLDATEQNGTIYLIGKVAVPSPSSGSASASPQGDSGAA-GTTFLSACVAVHSIEREVLVLPRLVEKDGEYSDGDEDAGGGGGSAKRADIGAVYQEMASVLVPRVIKRNAKGEQFRCKPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEEVAAXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFQKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK 858          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LXN8_9STRA)

HSP 1 Score: 281 bits (718), Expect = 2.430e-81
Identity = 168/420 (40.00%), Postives = 239/420 (56.90%), Query Frame = 1
Query: 1327 VASASSWLQKDETGEFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFR-RPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASD-ESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWS 2580
            V  A++  Q+ E  E++ +F+LDA E NG IYL GK+ +   +      +G++       F+S CVAVH  ER + VLPR +    ++         G  +R  +  VY+E++SVLVP V+ R  +G+ FR +PV RKYAF   ++PR ET YLK+ Y A +    +  C SGGKT++ IFG  +  +E FL+KRKLMGPCW+T+R PK+N++ VSWCKVE+A ++PK + R     V +  P A  A+ G                         + ++SLS+KTVV+P TH HE+V LS +VH ++  DG ++  +G     +  IR LG S G  YP  FPHD +   K    N           I    NER LLSLFF +LQ EDPD+L +HNL+GF+ D++L+RA+  KL  WS
Sbjct:    2 VGDAAAAAQQGE--EYVNIFYLDAAENNGVIYLFGKLPIQDGTGAGGVVKGEA----PRKFVSVCVAVHGCERNLFVLPRSIPDTFKED--------GTPERVGMTEVYKELSSVLVPSVMPRT-QGQSFRCKPVKRKYAFEHGAIPRTETDYLKVVYSATHGVPSQAQC-SGGKTYERIFGTTSSALELFLLKRKLMGPCWVTIRKPKLNSSVVSWCKVELAVENPKDVVR-----VVNSGPVAAGASAGATTTAGGGINVSLADCGPNPL----LTSVSLSIKTVVNPVTHMHEIVMLSGIVHNKIDADGDTEIRNGVNQSRFTFIRQLGVSCGNSYPAAFPHDTR---KVCAQNK----------IHAATNERELLSLFFSRLQLEDPDILSSHNLLGFEADVILARAIANKLPNWS 383          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH04_9STRA)

HSP 1 Score: 275 bits (702), Expect = 2.340e-73
Identity = 175/443 (39.50%), Postives = 244/443 (55.08%), Query Frame = 1
Query: 1297 SEAPSTPAGSVASASSWLQKDETGEFMRMFWLDATEQNGTIYLIGKV-AVPSSSSGSASPQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQD-SDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFR-RPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK-AQHAAQGLLL 2613
            SEA +  A +     + + ++   ++  MFW+DA E+NG +YL GKV  V +S   +  PQ        ++F+S CV V +  R + VLPR   K+G D + GDE       +   +  V++EM SVL P+ I    +G  +R +PV RKYAF D+SVPREET Y+K++Y A Y     +VCE GG+ F  IFGA    +E+F++KR+LMGPCWI +RNP  N AP SWCK+E+   +PK I+ +++  +  P P                                 VVTM++ +KTVV+P TH  EVV++SA+ H+ V LD ASDES   M     IRPLGQ++       FP D  ++VK   +            +Q MPNERALLS  F ++   DPDVLV HN+ G+D  +LLSR   LK+  WSK  +   QGL L
Sbjct:  403 SEAAAAAAAANLDTITKVDEETNEKYTDMFWIDACEKNGVVYLYGKVEVVHNSGKDNKKPQ--------SSFVSCCVVVRNNLRSLFVLPR--RKNGSDPNSGDE------LEYESMADVHKEMNSVLKPKCIPL-VEGASWRGKPVNRKYAFADISVPREETTYMKVQYDAKYDVPSPEVCEQGGQFFSKIFGAGASTLENFILKRRLMGPCWIKIRNPMPNKAPASWCKIELQVANPKDISPIVSP-MRHPPP---------------------------------VVTMTIKIKTVVNPSTHKSEVVSVSAICHKRVLLDTASDESNTNMTQISLIRPLGQASSGMALAQFPRDFDNEVKNGMSQ-----------LQRMPNERALLSRLFTQIGLWDPDVLVGHNIWGYDLQLLLSRCTDLKVMAWSKIGRRRKQGLPL 783          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3C7_9ARCH)

HSP 1 Score: 271 bits (692), Expect = 7.950e-73
Identity = 165/441 (37.41%), Postives = 239/441 (54.20%), Query Frame = 1
Query: 1282 PQYSLSEAP-STPAGSVASASSWL------QKDETGEFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFR-RPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWS 2580
            P +  S+AP S   G    + SWL          + +F+RM+WLDATE NG IYL G+V + S     A P+          F+S C  V   ER + VLPR    + +D         G + R   G VYQE++ +LVP +I +  +G+ F+ +PVMRKYAF   +VPR+ T+YLK+ Y A +       C+ GGK+F+AIFGA    +E FL+KR+L GPCWI ++ PKV N  VSWCKVE    +PK+I+++   +   P P                                 +V+M +S+KTVV+P +H HE+VA+SAL+H +V  +  ++ +   M  +  IR LG S G+ YP  FPH+I  +V+          +   + +QT   ER LLS+F  ++  EDPD+  +HNL+GF+FD+LL+R V  KL  WS
Sbjct:  173 PTFVDSDAPVSVSGGQKIDSKSWLLETPAEDNQPSEQFVRMYWLDATELNGVIYLFGRVPLAS-----ADPK------QPPRFVSCCAIVQGCERNLFVLPRAKPNEFKD---------GNSVRVSAGEVYQEVSKLLVPSIIPKQ-QGQAFKAKPVMRKYAFDHDTVPRDNTEYLKVIYSAKHGVPTPAQCQ-GGKSFEAIFGANISPLELFLLKRQLQGPCWIHIKAPKVANDAVSWCKVEFIVDNPKNISKVSQSEDLVPPP---------------------------------LVSMCVSIKTVVNPSSHLHEIVAVSALIHGKVDTEAETECNTNSMRRFTFIRALGVSCGQGYPPTFPHNIHQEVQ----------KHKEIALQTFNTERELLSMFLSRVMIEDPDIFASHNLLGFEFDVLLARLVANKLPNWS 548          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.910e-72
Identity = 173/455 (38.02%), Postives = 238/455 (52.31%), Query Frame = 1
Query: 1249 GSYMPSLEFQGPQ-----YSLSEA----PSTPAGSVASASSWLQKDETGEFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFR-RPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK 2583
            G  M  LE+ G +     YS+S      PS  +G V   +   + ++ GE++  FW DA EQNG IYL G+VA+                  G  F+SA   V  ++  +LVLP+     G D         G   R  +  VY+E+  +LVP VI R+A G+ F+ +PV R YAF    VPREET+YLK+ Y AG+     + CE+GG+ F+ IFGART  +E FL+KR+LMGP W+ VR PK   +  +  K E    +PK I R+ A     P PA P                              +V MS+++KTVV+P +  HEVVA+S + H  V  DG ++     +     +RPLG SAG  +P  FPHD+  +V+A     R         IQT  NERALLS FF +LQ EDPD++V HNL+GF+ ++LLSRA  LK++ W K
Sbjct:  356 GVKMEGLEYAGREEEEDPYSISSVAAAGPSAGSGQVTWEAVVREDEDGGEYVPFFWTDAHEQNGVIYLFGRVAIE-----------------GGRFISAACCVQGVQHSLLVLPKRTGNAGPD---------GKDVRYGMAEVYKEVQDLLVPSVIPRDA-GQGFKCKPVRRHYAFELEEVPREETEYLKVVYSAGHGLPSPERCEAGGRYFERIFGARTTALELFLLKRQLMGPSWLKVRGPKPAPSSATIAKFEFVVDNPKLIRRMEA-----PPPAPP------------------------------MVVMSVAIKTVVNPASQLHEVVAISTMTHVAVNCDGPTETGPHHIRQVTAVRPLGSSAGPGHPTAFPHDMAREVEAQSRKTR---------IQTQGNERALLSWFFQRLQTEDPDLVVGHNLLGFELEVLLSRATSLKVSVWHK 739          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IIV6_9STRA)

HSP 1 Score: 268 bits (685), Expect = 3.090e-71
Identity = 161/422 (38.15%), Postives = 225/422 (53.32%), Query Frame = 1
Query: 1348 LQKDETGEFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGA---TMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFRRPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRL-LAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSA-----GEEYPKVFPHDIKHQVKAAEANARRAGRGSGVP-IQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK 2583
            ++  E   ++ +FW+DA+E+NG ++L GKV V      +   +G +        ++F+S CV +H   R + VLPR              GG  G + A +  V+ EM  VL PR I +        + V RKYAF D SVPREE+QYLK+ Y A Y    EDVC  GG+ F+ IFGA    +E+F++KR+LMGPCW+ ++NP+ +    SWCK+E    +PK ITRL L E +       P                              VVT+SL +KT+V+P+TH  E+V++SA+ HR+V LD ASDES + M     +RPLGQ+A     G E    FP D+  ++             S +P +Q MPNERALLS    ++   DPDV+V HN  G+D D+LLSR   LK+  WSK
Sbjct:  239 METTEQQRYLDLFWIDASERNGVVFLFGKVEVKPQGDAAKGDKGGNNTKXXAQQSSFVSCCVMIHGNSRNLFVLPRRTG-----------GGENGDEPASLMDVHNEMKRVLQPRCIPKTEGAAWGGKVVKRKYAFHDPSVPREESQYLKVVYDAKYDVPDEDVCTGGGQHFEKIFGAGASTLENFIVKRRLMGPCWVRIKNPEASGVTRSWCKIECQVGTPKDITRLDLVEGIDRQQANRPPPP---------------------------VVTVSLKLKTIVNPKTHKSEIVSVSAIAHRKVLLDTASDESTRHMTQLSLLRPLGQAAAAGAGGGEAMAQFPTDLGRRIL------------SDMPQLQRMPNERALLSRLLAQMGVWDPDVIVGHNAWGYDMDVLLSRCAELKVKLWSK 610          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTL0_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.680e-65
Identity = 164/430 (38.14%), Postives = 220/430 (51.16%), Query Frame = 1
Query: 1297 SEAPSTPAGSVASASSWLQKDETG-EFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFRRPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK 2583
            SE    PA   A+  S L+K+E G   +RM+WLD TE+N  +YL GK+ +P+    +A+P+          F+S C  VH+++R++L LPR  E DG+               A +  V+ E+  +LVPRV+   A      +PV RKYAF D SVPR E  YLK+ Y A +PA   ++CE GG   Q IFG    L E+FLIKR+LMGP W+TV+NP   + P +W K+E     PK+I R+       P P  P                              +V ++L MKTVV P++  HE+V LSA+ HR V LD     +       L +RPLG SA  +    FPHD+    KAA  +  RA           PNERALL+ F  +L   DPDV+V HN  GFD  ILL R +  K+  WSK
Sbjct:    4 SETAVRPAAISATLESVLKKEEDGTSSLRMYWLDLTEKNHDLYLFGKIEIPAEEP-NAAPR----------FVSCCAIVHNLQRQLLCLPRPGE-DGEP--------------ASMQDVHAEVRKLLVPRVLPARAGCGFAAKPVTRKYAFEDPSVPRGEATYLKVVYDAKFPAPDPELCEQGGTFIQRIFGHSVGLTENFLIKRRLMGPGWVTVKNPFTTDVPSTWTKLEFHINDPKNIRRM-------PDPCPPVPP---------------------------LVAVTLKMKTVVHPKSSQHEIVCLSAICHRHVTLDKRPPPADAVTQLTL-VRPLGASAPPDALSHFPHDLDRHAKAAGGSVARA-----------PNERALLNRFMTQLGNWDPDVIVGHNAWGFDAQILLGRCLKNKVPGWSK 361          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA)

HSP 1 Score: 247 bits (630), Expect = 3.350e-64
Identity = 155/406 (38.18%), Postives = 212/406 (52.22%), Query Frame = 1
Query: 1369 EFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFRRPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRL-LAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK 2583
            +++ MFWLDA+E+NG +YL GKV VP  + G A  Q          + S CV + + +R + VLPR+ + D + S  +ED      +R  I  VY E+ SVL P  I  +       +PV R YAF D S+PR+E QY+K+ Y A YP     VC +GGKTF+ I GA    +E+FLIKR+LMGP W+ + NPK      SWCK E     PKS+ RL L  + A      P + P                          V T+S+  KT V+P++H  E+V +SAL +  V++D A+D+S + M     +RPL         + FP D++ + K                +Q  PNERALLS  F +L   DPDVLV+HN  G D D+LLSR V LK+  WSK
Sbjct:  377 QYIDMFWLDASERNGVVYLYGKVKVPIQTKGGAKQQKQ----QSFMYQSCCVTIPNNQRNLFVLPRI-KTDAKASTTEEDEENATVERYPISEVYGELKSVLQPSCIPHSHGATWGAKPVTRTYAFEDPSIPRDECQYMKVVYDAKYPVPDRHVCVAGGKTFEKILGAGASNLENFLIKRRLMGPGWVRIYNPKTPMGNASWCKWECTIDGPKSLQRLDLVTNRAGERVTIPESPP--------------------------VSTVSIKFKTAVNPKSHKLEIVCVSALFNSTVQIDAATDKSLRNMKQLTIVRPLNFETNGTMAQ-FPRDMEMEAKIMPE------------LQKSPNERALLSRLFAQLGSWDPDVLVSHNGWGHDIDVLLSRCVELKVGMWSK 738          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGZ8_AURAN)

HSP 1 Score: 236 bits (601), Expect = 6.420e-61
Identity = 153/403 (37.97%), Postives = 213/403 (52.85%), Query Frame = 1
Query: 1381 MFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGATMGTTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMASVLVPRVIKRNAKGEQFRRPVMRKYAFGDLSVPREE-TQYLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARRAGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLAT-WSK 2583
            M+WLD  EQ+G+IYL+GKV +          +G+        + SACV V  +ER   VLPR+  + G+              R  +  V+ E  + LVPR + + A  +   + V R Y FGD SVPR++ T+YLK+KY + +   P  +C+ GG+  + I GA    +E FL+KRKLMGPCWI V  PK ++  VSWC VEV   SPK+IT  LA D        P A P                          +V  ++S+KTVV+P+TH HE+VA+SAL HR V +DGA+ + G+               GE+     P        + +A +RR   G+   +   PNERAL+S    +LQQ+DPDVLV HN++GF+ D+LL RA+HLKL   WSK
Sbjct:    1 MYWLDVVEQSGSIYLVGKVKL----------EGED------AYASACVVVRDVERSFFVLPRVDPESGE--------------RYPMAKVWAETRAELVPRCVPKQAPFKC--KGVKRGYCFGDESVPRDDATEYLKVKYLSKFRPPPRGLCDRGGRVIEKILGAGATPLELFLVKRKLMGPCWIRVDKPKAHSPKVSWCAVEVEVASPKAIT--LARD-------CPYAAP-------------------------PLVCTTISLKTVVNPKTHQHEIVAVSALTHRGVGIDGATPDGGR---------------GEDERLFAPSP----GASHKAGSRRWTCGT---VTLAPNERALVSCLLSRLQQDDPDVLVGHNILGFELDVLLGRALHLKLGNAWSK 315          
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Match: DNA (polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UP17_9STRA)

HSP 1 Score: 221 bits (562), Expect = 3.620e-57
Identity = 135/363 (37.19%), Postives = 189/363 (52.07%), Query Frame = 1
Query: 1507 FLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAVYQEMAS-VLVPRVIKRNAKGEQFRRPVMRKYAFGDLSVPREETQ-YLKIKYPAGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGXXXXXXXXXXXXXXXXXXXXXXXXXVVTMSLSMKTVVSPRTHTHEVVALSALVHREVRLDGASDESGKKMGAWLGIRPLGQSA-GEEYPKVFPHDIKHQVKAAEANARRAGRGSGVP-IQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKLATWSK 2583
            +LS  + V  + R + VLP+  + DG                 D  A++QE+   VL+   + +        + V R YAFGD S+PR+  Q Y+K+KYPA YP    +VC++GGK F  I GA    +E+F+IKRKLMGPCWI + NP+ N   +SWCK+E+    PK I RL      +P P  P                              VV++S+ +KT+V P++H  E+V++SA+ H  V+L+ ASDE+ + M     IRPLG +A G      FP DI  +++            + +P +Q MPNERALLS F  +L   DPDVL  HN  G+D  ILL R V LK+  WSK
Sbjct:   45 YLSVSLLVTGMTRNLFVLPKPDDDDGN---------------VDFMALHQELNDKVLIGPCLPKTVGSTWAGKVVQRGYAFGDASIPRDTNQRYMKVKYPAKYPVPSLEVCQNGGKHFSRILGAGASNLENFIIKRKLMGPCWIRITNPRPNTVSLSWCKLELILDDPKQIQRLDLIQTGTPKPPPP------------------------------VVSVSIKLKTIVHPKSHKSEIVSISAICHNSVQLETASDENTRNMVQLSLIRPLGNAANGTNALPQFPRDIDSEIR------------TNMPQLQKMPNERALLSRFLAQLGMWDPDVLCGHNAWGWDLQILLCRCVELKVPLWSK 350          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig859.16709.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA0.000e+086.34polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
Hypothetical2.430e-8140.00protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
DNA2.340e-7339.50polymerase n=1 Tax=Attheya septentrionalis TaxID=4... [more]
DNA7.950e-7337.41polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0... [more]
DNA1.910e-7238.02polymerase n=1 Tax=Nannochloropsis salina CCMP1776... [more]
DNA3.090e-7138.15polymerase n=1 Tax=Odontella aurita TaxID=265563 R... [more]
DNA1.680e-6538.14polymerase (Fragment) n=1 Tax=Corethron hystrix Ta... [more]
DNA3.350e-6438.18polymerase n=1 Tax=Skeletonema marinoi TaxID=26756... [more]
DNA6.420e-6137.97polymerase n=1 Tax=Aureococcus anophagefferens Tax... [more]
DNA3.620e-5737.19polymerase (Fragment) n=1 Tax=Grammatophora oceani... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig859contigE_fasciculatus_S2_contig859:470..8449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1153.7
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FI10
Preferred namePOLA1
Model size2730
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000726,GO:0000731,GO:0000734,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009653,GO:0009889,GO:0009965,GO:0009987,GO:0010016,GO:0010468,GO:0010556,GO:0012505,GO:0016043,GO:0016070,GO:0016363,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018130,GO:0019103,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0030880,GO:0030894,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0036094,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045165,GO:0046483,GO:0046982,GO:0046983,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097747,GO:0098687,GO:0099402,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903046,GO:1903047,GO:1903506,GO:1905392,GO:1990234,GO:1990837,GO:2000112,GO:2001141
Exons12
EggNOG free text desc.leading strand elongation
EggNOG OGsCOG0417@1,KOG0970@2759
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-12_006630.2
EC2.7.7.7
Cds size2730
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig859.16709.1prot_E_fasciculatus_S2_contig859.16709.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig859 470..8449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842516.6155553-CDS-E_fasciculatus_S2_contig859:469..6161696842516.6155553-CDS-E_fasciculatus_S2_contig859:469..616Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 470..616 -
1696842516.643626-CDS-E_fasciculatus_S2_contig859:960..11731696842516.643626-CDS-E_fasciculatus_S2_contig859:960..1173Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 961..1173 -
1696842516.6576962-CDS-E_fasciculatus_S2_contig859:1565..16521696842516.6576962-CDS-E_fasciculatus_S2_contig859:1565..1652Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 1566..1652 -
1696842516.670045-CDS-E_fasciculatus_S2_contig859:2134..24671696842516.670045-CDS-E_fasciculatus_S2_contig859:2134..2467Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 2135..2467 -
1696842516.6836603-CDS-E_fasciculatus_S2_contig859:2850..29761696842516.6836603-CDS-E_fasciculatus_S2_contig859:2850..2976Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 2851..2976 -
1696842516.6930118-CDS-E_fasciculatus_S2_contig859:3482..35841696842516.6930118-CDS-E_fasciculatus_S2_contig859:3482..3584Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 3483..3584 -
1696842516.7037632-CDS-E_fasciculatus_S2_contig859:3910..40671696842516.7037632-CDS-E_fasciculatus_S2_contig859:3910..4067Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 3911..4067 -
1696842516.712708-CDS-E_fasciculatus_S2_contig859:4311..45201696842516.712708-CDS-E_fasciculatus_S2_contig859:4311..4520Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 4312..4520 -
1696842516.7222476-CDS-E_fasciculatus_S2_contig859:4776..56181696842516.7222476-CDS-E_fasciculatus_S2_contig859:4776..5618Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 4777..5618 -
1696842516.7330625-CDS-E_fasciculatus_S2_contig859:6064..61921696842516.7330625-CDS-E_fasciculatus_S2_contig859:6064..6192Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 6065..6192 -
1696842516.7499788-CDS-E_fasciculatus_S2_contig859:6456..67131696842516.7499788-CDS-E_fasciculatus_S2_contig859:6456..6713Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 6457..6713 -
1696842516.7603688-CDS-E_fasciculatus_S2_contig859:8320..84491696842516.7603688-CDS-E_fasciculatus_S2_contig859:8320..8449Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig859 8321..8449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig859.16709.1

>prot_E_fasciculatus_S2_contig859.16709.1 ID=prot_E_fasciculatus_S2_contig859.16709.1|Name=mRNA_E_fasciculatus_S2_contig859.16709.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=910bp
MSSTEERRTSARQRRVRPTAHSSALESLRAARDGLESRTEQHEDDDDEVY
DEVTEEEYQELVRKRQQADDFVVDDDGLGYADDGEEFIEKADGSEGAAGG
RGDKGGGRKGVNGKINADSLRRKARKLNQLGDEASQAGGGIKKFLRTGGG
STVGPSALSRNSSAAPGARRGGGAGAGGALNLDDMLSDLTSNPIADLAPG
NGNSSSGGPSSSSSSAMPLSKRKRGLVTPQSARSRRSYGSTASRGSSSAG
SASRRPPVPSAWTVRDYEDDPGASGDGDNDIVGDDVGGFEHFDGEEDAND
AGDVAMEDASDSGTAGAAAAAAANDAGDAAGAAAAAGGEEKELAAVVSPE
APATAAAPVAVAAAAKPRSRFARMKETNNIAVTAAAEAALRPKIVEEKPA
AAATAAAAAGKGGEGKGSYMPSLEFQGPQYSLSEAPSTPAGSVASASSWL
QKDETGEFMRMFWLDATEQNGTIYLIGKVAVPSSSSGSASPQGDSGATMG
TTFLSACVAVHSIEREVLVLPRLVEKDGQDSDGDEDGGGGGAKRADIGAV
YQEMASVLVPRVIKRNAKGEQFRRPVMRKYAFGDLSVPREETQYLKIKYP
AGYPALPEDVCESGGKTFQAIFGARTPLIESFLIKRKLMGPCWITVRNPK
VNNAPVSWCKVEVAAQSPKSITRLLAEDVASPSPAAPAATPGGAASPPSA
SKPAANTSAGKLPPPPPVVTMSLSMKTVVSPRTHTHEVVALSALVHREVR
LDGASDESGKKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANARR
AGRGSGVPIQTMPNERALLSLFFHKLQQEDPDVLVAHNLMGFDFDILLSR
AVHLKLATWSKAQHAAQGLLLLSRHEGRRRQLQRQRGGGAVALRHVLERQ
GVPQGDHLQV
back to top

mRNA from alignment at E_fasciculatus_S2_contig859:470..8449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig859.16709.1 ID=mRNA_E_fasciculatus_S2_contig859.16709.1|Name=mRNA_E_fasciculatus_S2_contig859.16709.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7980bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig859:470..8449- (Ectocarpus fasciculatus EfasUO2)
ATGTCCAGCACAGAGGAGAGGCGCACGAGCGCTCGGCAGAGGAGGGTTAG GCCCACGGCCCACTCATCTGCGCTGGAAAGCCTGCGTGCTGCACGAGATG GCCTCGAGAGCAGGACGGAGCAGCACGAGGTGAGGAGAAACGAGGAACCG ATTTGAAATGCACCCTGGGCAGCGGCTTCAGAGCCGCGCCGATGCTGCTG CCACAGGCTAGCAAGCTGCTGCGTTGAGTAGGTCGTGTTGGCTTGTACGT GCACAACTTCTGCAGACGCACGCTCTTCTATGCGTCGTGCTTCTGTGTGC TGTAGTGCCATCTGGTGGAGAGATCGTCTTGTGCATCTGCATGGCGCTGC CGTCAACCAGGGCAAGAGGATGATATTCAAACATTCACTCTTCCACACAA CCGACATTTTTGGAACACACAGCAGCCACCTGGTGCACACCCTCACCTCC ATCCCCGCCCCCTTTGCGAAGTACAACCAACAGTCGGCGCTGTCTTCCAC GAGTGTGATCGACGAGCCCGCTACCCTCTGTTGCAGCCCAAACCTCCTGC CTGCCGCTGTCTGTGTTTGTTCTTGCCGGATTTTACCCCCGACCCACCAC CGACCGTTTCGAGTTTCGGCAGGTTTTGAAATTTTGTCAGGTCTCTGCTC CCAAACCCCCGTGCGTGATGTTGTAAACATGTTGCATACAGCAGCAGCGT TGACCGCTTACCGAGGAGCTTTGTGCGCGCCCTGTCAATCGGCTGTGTAA ACACCTCCTACACACGCGCATATGAGACGAACTGTTCTGGCACACGCCCA ACAGGATACAGCGTAGTAAGCGGTGTTGGTATGTGCTTGCCGTGGACCGC CAGCCTAAAATTGCAGCAGCTACATAGAGTGGGGCCTTTTCGCGCGCAAA TGCGCAAAAGAGGCATGGCGCTTGCCAGAGCGCTGGCTTTCCACACTGCA ATGCGTACATCGCAATGCATGGTTTCGCGACTCAACCACACCTGCGGAGC TCCACCGGCGTGTCTTCCCTGTTGCCACGACTTTCTCTTCCAATCGTCGA AATATCTTACGCATCCGTATGCATTCGTAGCGAGAATACCGTCCGTATTT GTAGGATCCGCGTTTGCTATTATATCGCCGTACGCACAGGTTCCTCCGTA AGACTGGAGGTTGATGCCACCTGCCTTGGCTTGATACGTAGCCGCTCTAA GTTATGATGAAAGTCCGAGATACCGCTATTTTAGTGCCGTTGAGTGACGG GTCTGTCGGCACATGAGAGTGCTGTGTACATGTAAACAAACACGGCTGCT TCCAGCCAAACTGCTCGACACTAGGCCCTCTGGCATCATCCAGGGGCCAC CGAACCCTCATCCCCGGCCCCAACTCTGGGAGGCATGATATTGTGGCTTC GGAACAGCAGTACCAGTGTCGATATATGTGGCAGAGCAATCAAGTGCTGT TAGACAAAGGCTTACCCATTTGACCACTCAGTCAGCTAAATGGGTGGTCT AGTGGACTATCTAACTGTCGAGTGGCTAGACCACTCAGTCAGCTAAATGG GTGGTCTAGTGGACTATCTAACTGTCTGAGTGGCTATGTAATGCTTTAGC TCTTACCGTTCTCTAACAAGCGCTGTGGCGGCATGGGAATGATCGGTCGC GGCCTGTGATGCGTCCGATAGCAGCCTGATCTGGGTCTACCCACCCCTTA CAGACACCGCCCCGGTCCCAAAAACACGCCAACCAGGACGACGATGACGA GGTCTACGACGAGGTGACCGAGGAAGAATACCAGGAGCTCGTCCGCAAGA GACAGCAGGCGGACGACTTCGTCGTGGACGACGACGGCCTGGGCTACGCC GACGACGGCGAGGAGTTCATCGAGAAGGCCGACGGCTCGGAGGGAGCAGC CGGGGGGAGGGGGGACAAGGGAGGAGGCAGGAAAGGCGTCAACGGAAAGA TCAACGCGGATTCGCTTCGGCGCAAGGCTCGGAAGCTCAACCAGTGAGTC AAGTCACTCTTGTTGGATTATGTGTTTTGGTTCGTTTTGTTGTTTGCTCC GTCGGGTCGAGTGGCGTCTCCAAAGGGGTCCCGTACATTCACGTAAGGGT ACCTCTTTCTTTTGTCCCTCCCTTACCGTGCACAGACAGAAGTTGTGCCA GGCAATGGTTGGTCTTCCTATTTCCTCACTCTCTCGTGTTTGTCTCGCGT CTATACCGGCATCTTATCGACCGACCATTTTTCCTCTTTGCACACGCCGT AATAAAGGCTCGGAGATGAAGCTTCCCAGGCCGGGGGGGGCATCAAGAAG TTCCTCCGGACCGGCGGCGGTAGCACCGTCGGGCCCTCTGCTCTGTCCCG CAACTCTTCTGCTGCGCCCGGAGCCCGCCGCGGGGGTGAGACAGGCGTAT GTGTATGCGGTAGAACAGGTGTCTGGTTTCTCGATTGAATTTATGTTGGG CTTAGCTGTGCACGGATTTGATATGTACAGTAGTGGTAAACGCTTGTTGA AAACTTGTCTGTGTGAGCACAAGGCCATTCTCTGGTTCGTTCACCTATAT AGCTGTTACGATGGAGGTGCCTCTTGCCGGGATGGTTTATACCGACACGA TTTGATGCAGTGAAGACAAAAGCTTGCCGGCAATCAAGACCTACCGTTAT TCGGCCGCTGCGTTGCTTTCCACATGTTTCCCAACGGCTTTGACGAAAAG TTCACCCGCTGATGACACTTCGACGGTAGACCATGGAATGCCGAGGATGG TCGGCCATCGAACGCCAAAGATTCGGCGGCTTTGCTCTGACGCAACCCGA CCCCCTGGCTTTTTGACCGACCGACACGCAGGCGGCGCCGGCGCCGGGGG CGCCCTCAACCTGGACGACATGCTGAGCGACCTAACGTCCAACCCCATCG CCGACCTCGCCCCGGGCAACGGTAACAGCAGCAGCGGCGGCCCGTCGTCA TCCTCATCGTCAGCGATGCCCCTATCCAAGCGGAAGCGGGGCCTGGTTAC GCCGCAGAGCGCGCGCTCCCGCCGCTCCTACGGCAGCACCGCCTCCCGCG GCAGCAGCAGTGCCGGCAGCGCGAGCAGGCGCCCCCCGGTGCCCTCCGCC TGGACCGTGCGAGACTACGAGGACGACCCGGGAGCAAGCGGGGACGGTGA CAACGACATCGTTGGCGACGATGTTGGCGGGTTCGAGCATTTCGACGGAG AAGAAGACGCCAACGACGCCGGTGACGTCGCCATGGAAGATGCCTCGGAC AGCGGTACCGCTGGGGCGGCGGCGGCGGCGGCGGCAAATGACGCCGGAGA CGCCGCTGGGGCCGCCGCCGCCGCTGGAGGCGAGGAGAAGGAGCTCGCGG CGGTGGTCTCGCCCGAAGCGCCCGCAACGGCGGCGGCTCCGGTCGCCGTT GCTGCTGCCGCGAAGCCTCGGTCGAGGTTCGCCAGGATGAAGGAGACCAA CAACATCGCGGTAACCGCCGCCGCGGAGGCAGCCCTGCGCCCCAAGATCG TCGAGGAGAAACCGGCGGCGGCGGCGACGGCCGCGGCGGCTGCCGGAAAG GGCGGCGAGGGGAAGGGAAGCTACATGCCGAGCCTGGAGTTCCAGGGGCC GCAATACTCGCTCAGCGAGGCGCCCTCGACGCCCGCCGGTTCGGTCGCGA GCGCCTCGTCCTGGCTGCAGAAGGTGAGACAATTTGTTGCCGCGTTGTGT GTGTGGGTTTATTGTTGGCGTCAACCGCGCTGACCAATGGAAAGACGTCA GTCTCACTGCAGCTGAAAACGGAAATGCTTCTAAAGGCCATGACCTGGCA CCCGGCTCAGTTTCCGTCTGTTTCATGATACATGCAAGCGCGCGAGCTTC CCCCTCACTCACGACGACCTCGTGTAACCGCCCTGGAAGTAATTTTTGAG GCACAACTTGTGCGACCCTTCTCCCGCAGGACGAGACGGGGGAGTTCATG CGCATGTTCTGGCTCGACGCCACGGAGCAGAACGGCACGATATACCTCAT CGGCAAGGTGGCGGTCCCGTCGTCGTCGTCGGGTTCGGCATCGCCCCAAG GCGACTCCGGTGCTACCATGGGCACCACGTTCCTCTCCGCTTGCGTCGCT GTCCACAGCATCGAGCGGGAGGTGCTCGTCCTGCCGAGGTGTGGTGTGTT TGGGATATTCCCTTTTTTTTAATGGGATCACAAGTTGGCCTTGTTGTCGG AGGGCTTAATTTTTTCGTGGAATGAAAGAATGCCTTGTGTATCCGCACAC TGCTGTATTGCAATGATTTGTACTTTTCCAACAAATGATCTTTCTCGCAC AGCCATCTCCGCCGAGTTGAGTCAACACGAGAATGCGGTGCTGTTGTTGT GCCGTCGATGTTTATCGTTACCGCTGCTGCAGGCTGGTCGAGAAGGATGG CCAAGACAGTGACGGCGACGAAGACGGTGGCGGCGGTGGCGCCAAGCGAG CCGACATCGGCGCCGTGTACCAAGAGATGGCCTCCGTGCTGGTGCCCAGG GTGATCAAGCGGAACGCCAAGGGGGAGCAGTTCAGGCGCGTTTGTCCCTT CCTTTCCCTCCGCGTGCTCTCGTTGTTGTAGGGTGTCGTAGTTTAGCGTA GCTATCACAATCTCTTCCCCAGTGTACAACAAAGTTTGTGACTATGCTCT CGATTTCTTGCCAAGCGCTCATTTCATGAAGGTATTTGTGGTACATTGCA GACTTGACATGTTGTACCTTTTGCTGGCATAGTCTGCGTTTCGTGTGCCA CTACTGCTGTACGTGAAGGTTCCGTGGTGCAGATTTGACATATTGTACCC TTTTTTTGGCATCGTCTGCGTTTCGTGTGCCTCTATGTATGTAACCGCAC ACCTGAAGGTGTAAGCCGGTGATGCGCAAATACGCGTTCGGCGACCTGTC CGTTCCTCGAGAGGAGACACAGTACCTGAAGATCAAGTACCCGGCTGGGT ACCCGGCGCTGCCGGAGGTGAGAAAAGAAAAAGAAAAAAAGAGAGCGTCT TGTTCTTTGCTACAGGCTACAGGGTCGTGTGTTCACCGTGTATTGCAACG ATGGTGTTTAAGTGCCCCCCCTATTTCATTTTTGCGCAACCCTTTGTCTC AGCCGAGACATGATCCCTATTTAGATGCAGAAGATGCACGACGGTGTCAG GTTTTGTGACCGGCTGCCTTGCACAGACGCCGAACCCCCCCCCTTCACAC TATTGTATGTGTCTCTTTTTTTCGGAGTAGGAGAATGCCGCTCAGTTTCG AAGATTTCTGGGGTCAAATAATGGAGCGAGTGACTGAACGAGCACCCCTC ACCGCTCCCCCTTTCTCTCTCCCTCTCTGTCTGTTTCTCTCGCACTTTGT CCTCCCCCCCCTCCTCTCTCTTGTCGCCGTAACCTTCTCTTCCTCTCGGC ATTCACCCGTCCGGTTGCCCGCGCTCTTTCGTCTCTCTGGCGTGGGGGTG GTGGTCGCTCTCTCCTGTTGCAGGACGTTTGCGAGTCCGGGGGTAAGACC TTCCAGGCCATCTTTGGCGCTCGCACGCCCCTCATCGAGTCCTTCCTCAT CAAGAGGAAGCTCATGGGCCCTTGCTGGATCACAGTGCGCAACCCCAAGG TAGGTTAGGTTAGGTTAGGTTGGGTTGGGTTAGGTTCGCCAAGAACGCAT CCTCTCGCATGGTGTTCATTCATCCCGTTCATGTTCCACCGCTTGTTTAT TTTAGTGCTTGTGCGTCTTCACCTTCCTTCTCTACAAGCCAAACCCGGCG GTCTTCTTGTTGCCGCCGCCCTTGAGCGGTGGAGCGGCGATCCGGGACCG ATCGAAAAAAGAAGCATGAAAAGACGCTCCTTATCGCGGCGGCCTATCGT ATCGTATCGCCTTCGTTTTGAATGCGAGAGCAAGGGTGCAACAGCAGCCA GCAATCACATGCTCCTGAGCCGTCCCTTCCCCTCCTACCACCAAAACGCC ACCAACCCAACCAACAACTACAACCACCGCAGGTGAACAACGCGCCGGTG AGCTGGTGCAAGGTGGAGGTCGCCGCACAGTCCCCCAAGTCCATCACCCG CCTCCTGGCGGAAGACGTGGCATCGCCATCGCCAGCAGCTCCAGCGGCAA CGCCCGGGGGTGCGGCATCCCCTCCTTCCGCCTCCAAGCCCGCGGCCAAC ACCAGCGCGGGGAAGCTCCCCCCTCCGCCCCCCGTGGTGACCATGTCCCT GTCCATGAAGACGGTCGTCAGCCCCCGCACGCACACGCACGAGGTCGTGG CGCTGTCGGCGCTGGTGCACCGGGAGGTGCGGCTGGACGGTGCCTCCGAC GAGAGCGGAAAGAAGGTGCGGCGTGATTGAGACCGGTTCGTGGATCTTTT GACTTGTTTTTCTACGTAAACGCAACGAATTCATCTCTATCCGTAGGTAG AGTACGGGATAGACTAGCAATGAATTTATAGCGTTATGTTTTTTTGGGCC GCCTCTCTGGTGATGCCTGGCTGGCTGGGTGCTTGCTTCTTTTTGTATGC GTGCAGTGTTTTTGTCGTGGGGGTGGGGTGGCGGTGGGGGAGGGGGGCAA GGAATTTTGAAGAGCTTTATGAGTGTTGAGTAGACGGATCGTGTTTGGGT CGGGGGGGGGCAGGGGGGAGCTACACAACGGTGAACGATCAAGAGCAAAT TGGTGATTTTGGGGCGATGGTACTGTAGAATGACAGAGGTATGCGTAGGA AGTTATATATTACGAGCTTTTTGTCACCCCACCCACCTTCGCCTCTCCCG TCGTTGCGCGGCCGCTTTGTCTTTGTGTGTCTTTTCCTGTGTACCAGATG GGCGCTTGGCTTGGCATCCGCCCTCTCGGGCAGTCGGCCGGCGAAGAGTA CCCCAAGGTCTTCCCGCACGACATCAAGCACCAGGTACCTGCATCGTGTT TCTCATCGAGTTCGGAGTGCCACAGTCGGCGAAGGGAGAGCCTTTCTGCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTAGGCTATCCATCCTACAG TATCGTGAATGAGGAGAGAGCTTTGAGGACCCATAAGTGTTTTTCATGTT GAGGTTTGCTGCGTGGTTGGCTAAGGACAAGTGGCCTTCTTGTGCCGCTA GACTTGATTTGATCCTGCTCCAGGAATATTTGATTGTAGTTGTCGAGGGG GGGGTTCAGGTCACACGCTACTCTCAGCTTTCGCAAAGAGACAACCACGC CGACTTCTACTGTAGCCGCCAGTAGATGGACACCTGAGCATAACCCACGT ATGCATGCACTACGAACGCCGCGCAGGTCAAGGCGGCCGAGGCCAACGCG AGGCGGGCCGGGCGTGGCTCCGGCGTGCCCATCCAGACCATGCCCAACGA GCGGGCGCTGCTGTCCCTCTTCTTCCACAAGCTGCAGCAGGAGGACCCCG ATGTGCTGGTGGCCCACAACCTCATGGGCTTCGACTTTGACATCCTGCTT AGCCGCGCGGTGCACCTCAAGCTGGCCACCTGGTCCAAGGTGAGGCAGTC AGGTGTTTCATACCGTGGTACGTAGGATAACACACACCCCATTGACCTAA GATAACACACCCCGTGACGTAACAATAGCCGCACGGTGGACCTCAAGCTG GCTACCTGGTCGAACGCGAGGCAGGCGAGAGTTTCATTTTTCCACAACCT TGAATGATCCAATGATTCCATCGACCTGCTATGTACGCATGTACGTGGTT CTGGTGTACATCATTGACGTCGGTTCCAAAAGACTGCAACCAAATCAACT CCTGACGAGACCTCCTCCTTTTTTTTTTCACATCGTCGTTCACCTCTCGC GTGACCCGGACAACTTAAGATCGGCCGCCTGAGGCGCAACACGCCGCCCA AGGCCTACTCCTCCTCTCACGGCATGAAGGGCGCCGGAGGCAGCTACAAC GCCAACGTGGCGGCGGGGCGGTTGCTCTGCGACACGTACTTGAGCGCCAA GGAGTTCCTCAGGGAGACCACCTACAGGTA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig859:470..8449-

>mRNA_E_fasciculatus_S2_contig859.16709.1 ID=mRNA_E_fasciculatus_S2_contig859.16709.1|Name=mRNA_E_fasciculatus_S2_contig859.16709.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2730bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig859:470..8449- (Ectocarpus fasciculatus EfasUO2)
ATGTCCAGCACAGAGGAGAGGCGCACGAGCGCTCGGCAGAGGAGGGTTAG
GCCCACGGCCCACTCATCTGCGCTGGAAAGCCTGCGTGCTGCACGAGATG
GCCTCGAGAGCAGGACGGAGCAGCACGAGGACGACGATGACGAGGTCTAC
GACGAGGTGACCGAGGAAGAATACCAGGAGCTCGTCCGCAAGAGACAGCA
GGCGGACGACTTCGTCGTGGACGACGACGGCCTGGGCTACGCCGACGACG
GCGAGGAGTTCATCGAGAAGGCCGACGGCTCGGAGGGAGCAGCCGGGGGG
AGGGGGGACAAGGGAGGAGGCAGGAAAGGCGTCAACGGAAAGATCAACGC
GGATTCGCTTCGGCGCAAGGCTCGGAAGCTCAACCAGCTCGGAGATGAAG
CTTCCCAGGCCGGGGGGGGCATCAAGAAGTTCCTCCGGACCGGCGGCGGT
AGCACCGTCGGGCCCTCTGCTCTGTCCCGCAACTCTTCTGCTGCGCCCGG
AGCCCGCCGCGGGGGCGGCGCCGGCGCCGGGGGCGCCCTCAACCTGGACG
ACATGCTGAGCGACCTAACGTCCAACCCCATCGCCGACCTCGCCCCGGGC
AACGGTAACAGCAGCAGCGGCGGCCCGTCGTCATCCTCATCGTCAGCGAT
GCCCCTATCCAAGCGGAAGCGGGGCCTGGTTACGCCGCAGAGCGCGCGCT
CCCGCCGCTCCTACGGCAGCACCGCCTCCCGCGGCAGCAGCAGTGCCGGC
AGCGCGAGCAGGCGCCCCCCGGTGCCCTCCGCCTGGACCGTGCGAGACTA
CGAGGACGACCCGGGAGCAAGCGGGGACGGTGACAACGACATCGTTGGCG
ACGATGTTGGCGGGTTCGAGCATTTCGACGGAGAAGAAGACGCCAACGAC
GCCGGTGACGTCGCCATGGAAGATGCCTCGGACAGCGGTACCGCTGGGGC
GGCGGCGGCGGCGGCGGCAAATGACGCCGGAGACGCCGCTGGGGCCGCCG
CCGCCGCTGGAGGCGAGGAGAAGGAGCTCGCGGCGGTGGTCTCGCCCGAA
GCGCCCGCAACGGCGGCGGCTCCGGTCGCCGTTGCTGCTGCCGCGAAGCC
TCGGTCGAGGTTCGCCAGGATGAAGGAGACCAACAACATCGCGGTAACCG
CCGCCGCGGAGGCAGCCCTGCGCCCCAAGATCGTCGAGGAGAAACCGGCG
GCGGCGGCGACGGCCGCGGCGGCTGCCGGAAAGGGCGGCGAGGGGAAGGG
AAGCTACATGCCGAGCCTGGAGTTCCAGGGGCCGCAATACTCGCTCAGCG
AGGCGCCCTCGACGCCCGCCGGTTCGGTCGCGAGCGCCTCGTCCTGGCTG
CAGAAGGACGAGACGGGGGAGTTCATGCGCATGTTCTGGCTCGACGCCAC
GGAGCAGAACGGCACGATATACCTCATCGGCAAGGTGGCGGTCCCGTCGT
CGTCGTCGGGTTCGGCATCGCCCCAAGGCGACTCCGGTGCTACCATGGGC
ACCACGTTCCTCTCCGCTTGCGTCGCTGTCCACAGCATCGAGCGGGAGGT
GCTCGTCCTGCCGAGGCTGGTCGAGAAGGATGGCCAAGACAGTGACGGCG
ACGAAGACGGTGGCGGCGGTGGCGCCAAGCGAGCCGACATCGGCGCCGTG
TACCAAGAGATGGCCTCCGTGCTGGTGCCCAGGGTGATCAAGCGGAACGC
CAAGGGGGAGCAGTTCAGGCGCCCGGTGATGCGCAAATACGCGTTCGGCG
ACCTGTCCGTTCCTCGAGAGGAGACACAGTACCTGAAGATCAAGTACCCG
GCTGGGTACCCGGCGCTGCCGGAGGACGTTTGCGAGTCCGGGGGTAAGAC
CTTCCAGGCCATCTTTGGCGCTCGCACGCCCCTCATCGAGTCCTTCCTCA
TCAAGAGGAAGCTCATGGGCCCTTGCTGGATCACAGTGCGCAACCCCAAG
GTGAACAACGCGCCGGTGAGCTGGTGCAAGGTGGAGGTCGCCGCACAGTC
CCCCAAGTCCATCACCCGCCTCCTGGCGGAAGACGTGGCATCGCCATCGC
CAGCAGCTCCAGCGGCAACGCCCGGGGGTGCGGCATCCCCTCCTTCCGCC
TCCAAGCCCGCGGCCAACACCAGCGCGGGGAAGCTCCCCCCTCCGCCCCC
CGTGGTGACCATGTCCCTGTCCATGAAGACGGTCGTCAGCCCCCGCACGC
ACACGCACGAGGTCGTGGCGCTGTCGGCGCTGGTGCACCGGGAGGTGCGG
CTGGACGGTGCCTCCGACGAGAGCGGAAAGAAGATGGGCGCTTGGCTTGG
CATCCGCCCTCTCGGGCAGTCGGCCGGCGAAGAGTACCCCAAGGTCTTCC
CGCACGACATCAAGCACCAGGTCAAGGCGGCCGAGGCCAACGCGAGGCGG
GCCGGGCGTGGCTCCGGCGTGCCCATCCAGACCATGCCCAACGAGCGGGC
GCTGCTGTCCCTCTTCTTCCACAAGCTGCAGCAGGAGGACCCCGATGTGC
TGGTGGCCCACAACCTCATGGGCTTCGACTTTGACATCCTGCTTAGCCGC
GCGGTGCACCTCAAGCTGGCCACCTGGTCCAAGGCGCAACACGCCGCCCA
AGGCCTACTCCTCCTCTCACGGCATGAAGGGCGCCGGAGGCAGCTACAAC
GCCAACGTGGCGGCGGGGCGGTTGCTCTGCGACACGTACTTGAGCGCCAA
GGAGTTCCTCAGGGAGACCACCTACAGGTA
back to top