mRNA_E_fasciculatus_S2_contig8588.16707.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8588.16707.1
Unique NamemRNA_E_fasciculatus_S2_contig8588.16707.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP06_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 3.200e-71
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDHRQVLKEQKLAARRARGYDK 336
            IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYF+KEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDH+QVLKEQKLAARRARGYDK
Sbjct:  129 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFKKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDHKQVLKEQKLAARRARGYDK 240
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BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ48_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.740e-29
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAM 255
            I+YLTKH+Q HP D+HSRRGLI +VN RR QLNY F  EP+ CL++CA+LGIRF+P++ V+ REQ+Y+++ NTKSKIG  R  A+
Sbjct:  141 IIYLTKHLQTHPKDFHSRRGLIALVNNRRSQLNYLFENEPQRCLDLCASLGIRFKPRSAVQSREQKYSSFKNTKSKIGMLRAAAL 225
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BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: Tetrapyrrole (methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.650e-27
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAM 255
            I+YLTKHMQ HP D+HSRRGLI +VNKRR QLN+ F  + + CLE+CA+LGIRF+P++ V+ REQ+Y+++ NTKSKIG  R  A+
Sbjct:  112 IIYLTKHMQTHPKDFHSRRGLIALVNKRRSQLNFLFEHDAERCLELCASLGIRFKPRSAVQSREQKYSSFKNTKSKIGMLRAAAL 196
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BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8K6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.130e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAY 210
            I YLT H+Q++P D+ SRRGL+ +VNKRRR LNY +RK P++ + M   LG+RF+P   V+ RE++YA Y
Sbjct:  146 IKYLTAHLQRNPKDFASRRGLVAIVNKRRRLLNYLYRKNPEKAMGMVTELGVRFKPPGTVQTREEKYAVY 215
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BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CN17_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.580e-15
Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSK 228
            I YLT+H+++HP D+ ++RGL+ +VNKRR+ LNY + K P+   E+ A LG+R +P  +V+ R ++Y AY   K K
Sbjct:  127 ITYLTRHLKEHPKDFSTKRGLLALVNKRRKLLNYLYSKNPERYAELVAALGVRHKPVGRVQSRSEKYGAYPQQKPK 202
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BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: 30S (ribosomal protein S15 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C329_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.590e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSK 228
            I+YLTKHMQQ+P D+ +RRGL+ +VNKRRR LNY FR    + +E+ A+LGIR +   +V  RE+ Y  ++  K K
Sbjct:   75 IMYLTKHMQQNPKDFSTRRGLLALVNKRRRLLNYLFRVNQDKYVEIIASLGIRHKAPGRVMTREEVYGRFSQRKKK 150
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BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRX6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.880e-14
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAY 210
            I Y+T+H ++HP D+HSRRGLITMVNKRRR LNY  + +P+    + + LGIRF+   ++  R +RYAA+
Sbjct:  141 ITYMTEHAKRHPKDHHSRRGLITMVNKRRRLLNYLNKTDPEAVERITSELGIRFKAAGRIMTRAERYAAF 210
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: 30S (ribosomal protein S15 n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZK55_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.290e-14
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKS 225
            I YLTKH+QQ+P DY +RRGL+ +VNKRRR LNY  R++ ++  ++ ++LGIR +   +V  RE +Y  +   KS
Sbjct:  103 ISYLTKHLQQNPKDYSTRRGLVALVNKRRRLLNYLIREDEQKYADIISSLGIRHKAPGRVESREDKYGRFNKQKS 177
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: 30S (ribosomal protein S15 n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFF2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.580e-13
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKS 225
            I YLTKH+QQHP D+ +RRGL+ MVNKRRR LNY ++++ +  + +  +LG+R +P  +   RE++YA+Y   K+
Sbjct:  113 ISYLTKHLQQHPKDFSTRRGLVAMVNKRRRLLNYLYQEDQERYVAVVQSLGVRHKPPGRY-DREEKYASYPKQKA 186
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCK9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.730e-13
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 IVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKS 225
            I YLTKH+QQHP D+ +RRGL+ MVNKRRR LNY F+++    + +  +LGIR +P  +   RE++Y++Y   K+
Sbjct:  125 ISYLTKHLQQHPKDFSTRRGLVAMVNKRRRLLNYLFKEDQDRYVAVVQSLGIRHKPPGRY-DREEQYSSYPKQKA 198
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8588.16707.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.200e-7198.21protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP06... [more]
Uncharacterized1.740e-2961.18protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Tetrapyrrole6.650e-2761.18methylase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
Hypothetical8.130e-1652.86protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical3.580e-1544.74protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
30S1.590e-1450.00ribosomal protein S15 n=2 Tax=Corethron hystrix Ta... [more]
Hypothetical2.880e-1451.43protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
30S9.290e-1446.67ribosomal protein S15 n=2 Tax=Craspedostauros aust... [more]
30S1.580e-1346.67ribosomal protein S15 n=1 Tax=Pseudo-nitzschia aus... [more]
Uncharacterized2.730e-1348.00protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8588contigE_fasciculatus_S2_contig8588:4770..6582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionRibosomal protein S15, bacterial-type
Ec32 orthologEc-06_007070.1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842516.3854249-CDS-E_fasciculatus_S2_contig8588:4769..49131696842516.3854249-CDS-E_fasciculatus_S2_contig8588:4769..4913Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8588 4770..4913 -
1696842516.3974495-CDS-E_fasciculatus_S2_contig8588:5643..57491696842516.3974495-CDS-E_fasciculatus_S2_contig8588:5643..5749Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8588 5644..5749 -
1696842516.4083562-CDS-E_fasciculatus_S2_contig8588:6493..65611696842516.4083562-CDS-E_fasciculatus_S2_contig8588:6493..6561Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8588 6494..6561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842516.4235504-UTR-E_fasciculatus_S2_contig8588:6561..65821696842516.4235504-UTR-E_fasciculatus_S2_contig8588:6561..6582Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8588 6562..6582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8588.16707.1prot_E_fasciculatus_S2_contig8588.16707.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8588 4770..6561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8588.16707.1

>prot_E_fasciculatus_S2_contig8588.16707.1 ID=prot_E_fasciculatus_S2_contig8588.16707.1|Name=mRNA_E_fasciculatus_S2_contig8588.16707.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=106bp
MQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPK
TKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDHRQVLKEQKLAARRA
RGYDK*
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mRNA from alignment at E_fasciculatus_S2_contig8588:4770..6582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8588.16707.1 ID=mRNA_E_fasciculatus_S2_contig8588.16707.1|Name=mRNA_E_fasciculatus_S2_contig8588.16707.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1813bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8588:4770..6582- (Ectocarpus fasciculatus EfasUO2)
ATCGTGTACCTCACCAAGCACATGCAGCAACACCCGCACGACTACCACTC
CCGGCGCGGGCTCATCACCATGGTCAACAAGAGGCGTAGGTGCGTATATA
CATCTAGAGACTTCTCGCGTGGTTGTCGCCCATGCGGTCTGTCACTTGTC
CTCGTTTATTATTACAGCAGTGCGTGCGCTGCACGCTATGATGGTACGGA
AGCAAACCGACAGCGGTCCAGCCAGTCAGGGAAATGCCGCTACTAATTCT
GGGGGATAGGTTTGCAATGCGAAGAAAGAACGCCCCCCCGCCCCGGGTGA
CGTGAGCAAAGGCGACAGTTCTCCACTGCTGCTGTTGCTGGACTACTTTT
ATCCTTTGGCCGCACTCCGGTGGTCGTGCGCGTGTGCACCAACTGCATGT
TACTTTCTACTTCATGTGTCTAGACATGAGTACACCCCCCGCTCCGGGTG
ACGTAAAGCAAAGGCGACAATTCGCGAGGAAGTTCTGAGTATTTGACAGG
CCCCGGCGCAAGACAAGACGATTTCTTAGACAAATGAAGTAGAAGTAGCT
TAAGTTGGTGCACGCGCGCACGACCACCGGAGTGCGGCCAAAGGATAAGA
GTGGTCCAGCAGCAGCAGCAGCAGCAGTGGAGACATCTTCCATGACCACC
ACGAGTATTGAAGTTCCCCCTCTGCAGCTGCGATTGTTCACTCTGTCGCA
ATGGCCTGAAACATTTTACCGGAAGTTGTCGAACGCCACGCTATGATCTG
CTGACGCCCCCTCCCTCGCTGGCCGCATGTCTCCACGCCCCTCTCTCTGT
CGACTGGCCCGTGTGTGTTTGTCCGGCCCGCAGGCAACTCAACTACTACT
TCAGGAAGGAGCCCAAGGAGTGCCTAGAGATGTGCGCGACGCTGGGGATC
CGATTCCGCCCCAAGACGAAAGTCAGGGGCCGAGAGCAGGTGCGTTCGAT
AGTTTGGTTCGAGTCATTTGTAACGCGGCGCGTTTTTTATAGAACAATAC
ATAAAACCGCACGGAAAGACTCTTGTCAGGTCAAGATTTAACCACAGTCA
AATTTTTAATTCATTTACCCTTTTTTTCTTCATGACCGGTGTTGTCATGG
TTCCGCAAAGCAAAGAAGCGAGAAGCGTTGCTGTCGTTTTCTCGTTAGCA
GCTGACAATCCAAGTCTCTTTTTTGTCACGTGTGTTCGTAGGTCGGTCCT
ACTCTAGTGGTCTCGATGTATTTTGACACGTTGGGGCGCACCGCTTCGAG
AAGATGTCACACTTGTAGCATGCGGCCTAAGCGTTTTCTCTTGTGTTATC
TCGCGCACCGGTAGTCTTGATTTGTTATTAATAGGCGTTTGTCGGGTGCT
CGCTGAACGGCCATTTCCCCCCGCAGTTTGGTGTGGTTGTGCCGTTTCGT
GTGTCTAGCATCGACGGCACAACGGGCTGCCCAATGAAGGACGCTGGTGT
TGGTGGGACGAAAAAACGACGTTTTTCTCGTAGGTCCTCAGGGTCCCTAT
GCTGAAAAGCCGCGGAGGACTTCCATGCGGGAAATCTTTCGCAGAACGAA
TATTGATCAATGCCGATCCCAACAACTTGTCTCTAACGCTCCCCACCGCT
CGCGCCTTCGTTTGGCAACCGGTCTCTTGCCTCTCACGCCCCCTCCCTCT
CTCTCTCTCTCTATCTCAGCGTTACGCGGCGTACACCAACACCAAGTCCA
AGATCGGTAACGCCCGCCGCACGGCGATGCTCAACAAGGAGCGAGTCGAC
CACAGGCAGGTCCTCAAGGAGCAGAAGCTGGCCGCCAGGCGGGCCAGGGG
CTACGACAAATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8588:4770..6582-

>mRNA_E_fasciculatus_S2_contig8588.16707.1 ID=mRNA_E_fasciculatus_S2_contig8588.16707.1|Name=mRNA_E_fasciculatus_S2_contig8588.16707.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=318bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8588:4770..6582- (Ectocarpus fasciculatus EfasUO2)
ATGCAGCAACACCCGCACGACTACCACTCCCGGCGCGGGCTCATCACCAT
GGTCAACAAGAGGCGTAGGCAACTCAACTACTACTTCAGGAAGGAGCCCA
AGGAGTGCCTAGAGATGTGCGCGACGCTGGGGATCCGATTCCGCCCCAAG
ACGAAAGTCAGGGGCCGAGAGCAGCGTTACGCGGCGTACACCAACACCAA
GTCCAAGATCGGTAACGCCCGCCGCACGGCGATGCTCAACAAGGAGCGAG
TCGACCACAGGCAGGTCCTCAAGGAGCAGAAGCTGGCCGCCAGGCGGGCC
AGGGGCTACGACAAATAA
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