mRNA_E_fasciculatus_S2_contig858.16703.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig858.16703.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ9_ECTSI) HSP 1 Score: 737 bits (1903), Expect = 4.060e-247 Identity = 431/479 (89.98%), Postives = 445/479 (92.90%), Query Frame = 1
Query: 52 GAEVEYWEEVALEDGTACFYNHTRQEYFSSLPANDATTNEGSADVDEAQPAAAGESRHENSLEPLEGQVWDGVDGEVFLPWPDEEMRASPNAVVSHDRDLETAEDDDDEPFTPDDPAVVREQNLRALLVLLPAKLMNGVIKSAMEGAMLHTRRTATADAEKRRRLLLSSRAQFRHTTQKTSQGDMKHKDGDGLDDETEAGPAVAGKTFDSAETPDSWRNTTTQERDSIVGHKLNEVLRVLYSTSTEEARVTMRAIYLSSQGIGAAGAQQLAPALKDCVIVALHLGNNALGDKGLISLADGLRHARGLQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIYLSQPGCPLRSLSLAGCLDVDPAAWKTINVRGKDGMGWDPPRPGDDGAVSLAAALVSPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTDESAWESAADLLSFGLQAS 1488
G EV+YWEEVALEDGT CFYNHTRQEYFS LPANDAT N A VDEAQP A GE H+NSLEPLEGQVWDGVDGEVF+PWPDEEMRASP+AVV+H++ LET E DD+EPFTPDDPAVVREQNLRALLVLLPAKLMNGVIK+AMEGAMLHTRRTATADAEKRRRLLLSSRAQFRHT +K QGDMKHKDGDG DDETE GP G+T DSAETPDS RNTTTQERD+IVGHKL EVLRVLYSTSTEEARVTMRAIYLSSQGIGAAGAQQLAPALKDCVIVALHLGNNALGDKGL SLADGLRHARGLQK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AIYLSQ GCPLRSLSLAGCLDVDPAAWKTINVRGK+GM WDPPRPGDDGAVSLAAAL+SPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTD SAWESAADLLSFGLQAS
Sbjct: 24 GTEVDYWEEVALEDGTVCFYNHTRQEYFSLLPANDAT-NGCPASVDEAQPTAVGEFSHDNSLEPLEGQVWDGVDGEVFVPWPDEEMRASPDAVVAHNKALETTEGDDEEPFTPDDPAVVREQNLRALLVLLPAKLMNGVIKAAMEGAMLHTRRTATADAEKRRRLLLSSRAQFRHTAKKNCQGDMKHKDGDGFDDETEEGPTAEGETVDSAETPDSRRNTTTQERDTIVGHKLQEVLRVLYSTSTEEARVTMRAIYLSSQGIGAAGAQQLAPALKDCVIVALHLGNNALGDKGLCSLADGLRHARGLQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLAIYLSQQGCPLRSLSLAGCLDVDPAAWKTINVRGKEGMRWDPPRPGDDGAVSLAAALISPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTDASAWESAADLLSFGLQAS 501
BLAST of mRNA_E_fasciculatus_S2_contig858.16703.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ8_ECTSI) HSP 1 Score: 319 bits (818), Expect = 5.390e-96 Identity = 186/310 (60.00%), Postives = 202/310 (65.16%), Query Frame = 1
Query: 3511 DMGHGLVLPGSNEATTRARTAPSVGLTADNTRLHGKLSFDHLSSSNERAPVVVEGEPGLRGDTCKDETGAHIPNVTDDGGIHATGGGATNGDGRQQQHARPASSERGETQSGRWEEGAGTERVMPLHADEAWVGAGPIIEATGDKIPNDKMNTNALLAHTQSPMEAEEMRRLSEGYFEANQEHMNAVARRESPHVKRALALIRDHGDIIRLKEKRTPEADMHRDKLVQGRPRSKRRPRGETPLLGVQLNDGIALGAEIAMLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARNILQREKHRAHMVY 4440
DMGHG+VLPGSNEA TRARTAPSV TADNTRLHGKLS+D LSSS+ERAP V EG PGLRGD C+D G HIPNVT DGGI GGGA NGDGRQ+QHAR AS+ERGETQSGR EEGAGT+RV+PLH DEA VGA PI EATGD PN K++TNA AHT+SPMEAEE++RLSE Y EA QE++NAV GSGEEDEEGN ILPEIDDRFLTVGQRLRRLRDAR+ LQREKHRAHM Y
Sbjct: 4 DMGHGIVLPGSNEAATRARTAPSVRSTADNTRLHGKLSYDDLSSSSERAPAVTEGTPGLRGDACRDGPGVHIPNVTGDGGIDPKGGGAKNGDGRQEQHARRASAERGETQSGRREEGAGTDRVIPLHTDEAMVGADPISEATGDTTPNHKISTNAF-AHTKSPMEAEEVQRLSEAYSEATQEYLNAV---------------------------------------------------------------------------GSGEEDEEGNRILPEIDDRFLTVGQRLRRLRDARDNLQREKHRAHMKY 237
BLAST of mRNA_E_fasciculatus_S2_contig858.16703.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE5_9PHAE) HSP 1 Score: 298 bits (763), Expect = 1.780e-89 Identity = 160/177 (90.40%), Postives = 169/177 (95.48%), Query Frame = 1
Query: 4288 MLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARNILQREKHRAHMVYSRQMKRNLRERKRFVLAEKRAGRIAKTMDTKQLMEALKERGYETEGSEQLDQLRRVYIEGIQPEIRVRLHATSRWTKSRNKHRERTDTVEVGEIVARRQQLTSSKQATPFSPSPFTRHNVRHAATV 4818
MLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDAR+ L+REK RAH+ YSRQ+K NLRERKRFVLAEKRAGRIAK+MDTKQL+EALKERGY T+GSEQLDQLRRV+IEGIQPEIRVRLHATSRWTKSRNKHRERTDTVEVGEIVARRQQLTSSK+ TPFSPSP TR NVRHAATV
Sbjct: 1 MLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARDNLEREKQRAHLEYSRQVKSNLRERKRFVLAEKRAGRIAKSMDTKQLVEALKERGYATKGSEQLDQLRRVFIEGIQPEIRVRLHATSRWTKSRNKHRERTDTVEVGEIVARRQQLTSSKRVTPFSPSPITRLNVRHAATV 177
BLAST of mRNA_E_fasciculatus_S2_contig858.16703.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC6_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.890e-15 Identity = 72/200 (36.00%), Postives = 88/200 (44.00%), Query Frame = 1
Query: 1243 PGDDGAVSLAAALVSPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTDESAWESAADLLSFGLQASCSFRSSLP--------------------VHTILLRACGLSREQVLAIQANTSPQITTVGKTRRQEESKEEARSDEGDGGGSMNNPLPWREEKRLGFRAACLREWLLDAARLQGMRYPR 1782
PGD+GAV LAAAL+SPHGC L+RLR+ NA + G +AIA AL LE +D+SGND ++AA LL A+ + ++ LRACGLS Q+ T G PL W EEKRLG A LR WLLDAA +G YPR
Sbjct: 377 PGDEGAVCLAAALLSPHGCALQRLRLVNARLGAAGVRAIAAALHCRSALEELDLSGNDLSDV------DTAALLLRAIRVAAXXXXXXXXXXXXXXXXXXXXXXXXXEGRLRSVALRACGLSGAQLAEAARLT------------------------GAAXXXXXXPLTWAEEKRLGAEGAALRAWLLDAAAGKGFEYPR 546 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig858.16703.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig858.16703.1 >prot_E_fasciculatus_S2_contig858.16703.1 ID=prot_E_fasciculatus_S2_contig858.16703.1|Name=mRNA_E_fasciculatus_S2_contig858.16703.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1505bp MRASPNAVVSHDRDLETAEDDDDEPFTPDDPAVVREQNLRALLVLLPAKLback to top mRNA from alignment at E_fasciculatus_S2_contig858:7915..22398+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig858.16703.1 ID=mRNA_E_fasciculatus_S2_contig858.16703.1|Name=mRNA_E_fasciculatus_S2_contig858.16703.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=14484bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig858:7915..22398+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig858:7915..22398+ >mRNA_E_fasciculatus_S2_contig858.16703.1 ID=mRNA_E_fasciculatus_S2_contig858.16703.1|Name=mRNA_E_fasciculatus_S2_contig858.16703.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=4515bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig858:7915..22398+ (Ectocarpus fasciculatus EfasUO2)back to top |