mRNA_E_fasciculatus_S2_contig8565.16694.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8565.16694.1
Unique NamemRNA_E_fasciculatus_S2_contig8565.16694.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8565.16694.1 vs.
Match: SNase-like (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP57_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.340e-17
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   19 LVLGKIVALRLGEFDKFGRLLGAIHTPEGVNVASDLVSKGMAVEYHGGKRPEW 177
            LVLGKIVAL+LG+FDKFGRLLG+I T +GVNV  DL+S+G+AV+Y GGKR  W
Sbjct:   74 LVLGKIVALKLGKFDKFGRLLGSIETSDGVNVGDDLISRGLAVKY-GGKRHAW 125
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8565.16694.1 vs.
Match: Putative (endonuclease n=1 Tax=Pacmanvirus S19 TaxID=2862371 RepID=A0A8F8X6J7_9VIRU)

HSP 1 Score: 53.5 bits (127), Expect = 2.180e-7
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   19 LVLGKIVALRLGEFDKFGRLLGAIHTPEGVNVASDLVSKGMAVEYHGGKRPEW 177
            L+L KI++L +GEFDK+GRLLG + T +G+NV   +V+ G    Y+G     W
Sbjct:   90 LILNKIISLEIGEFDKYGRLLGVV-TIDGINVNEHMVAGGYGCSYNGSGEKLW 141
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8565.16694.1 vs.
Match: SNase-like (n=1 Tax=Pacmanvirus A23 TaxID=1932881 RepID=A0A1X6WF84_9VIRU)

HSP 1 Score: 48.5 bits (114), Expect = 1.880e-5
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   19 LVLGKIVALRLGEFDKFGRLLGAIHTPEGVNVASDLVSKGMAVEYHGGKRPEW 177
            L+L KIV L +G+FDK+GRLLG +   +G+NV + +V+ G    Y G     W
Sbjct:   90 LILNKIVNLEIGDFDKYGRLLGTVIV-DGINVNAYMVAGGYGCNYDGSGEKLW 141
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8565.16694.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
SNase-like1.340e-1771.70n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Putative2.180e-745.28endonuclease n=1 Tax=Pacmanvirus S19 TaxID=2862371... [more]
SNase-like1.880e-543.40n=1 Tax=Pacmanvirus A23 TaxID=1932881 RepID=A0A1X6... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8565contigE_fasciculatus_S2_contig8565:111..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size180
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionNuclease
Ec32 orthologEc-06_006550.1
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.9329326-CDS-E_fasciculatus_S2_contig8565:110..2901696842514.9329326-CDS-E_fasciculatus_S2_contig8565:110..290Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8565 111..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8565.16694.1prot_E_fasciculatus_S2_contig8565.16694.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8565 111..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8565.16694.1

>prot_E_fasciculatus_S2_contig8565.16694.1 ID=prot_E_fasciculatus_S2_contig8565.16694.1|Name=mRNA_E_fasciculatus_S2_contig8565.16694.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
DHAESPLVLGKIVALRLGEFDKFGRLLGAIHTPEGVNVASDLVSKGMAVE
YHGGKRPEW*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8565:111..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8565.16694.1 ID=mRNA_E_fasciculatus_S2_contig8565.16694.1|Name=mRNA_E_fasciculatus_S2_contig8565.16694.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8565:111..290+ (Ectocarpus fasciculatus EfasUO2)
GATCATGCAGAAAGCCCTCTCGTCCTGGGAAAGATAGTAGCACTTAGGCT
AGGTGAATTCGACAAGTTCGGCCGTCTCCTGGGGGCGATCCACACTCCGG
AAGGAGTCAACGTCGCCAGCGACCTCGTGTCCAAAGGGATGGCGGTGGAA
TACCACGGGGGGAAGAGGCCCGAGTGGTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8565:111..290+

>mRNA_E_fasciculatus_S2_contig8565.16694.1 ID=mRNA_E_fasciculatus_S2_contig8565.16694.1|Name=mRNA_E_fasciculatus_S2_contig8565.16694.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8565:111..290+ (Ectocarpus fasciculatus EfasUO2)
GATCATGCAGAAAGCCCTCTCGTCCTGGGAAAGATAGTAGCACTTAGGCT
AGGTGAATTCGACAAGTTCGGCCGTCTCCTGGGGGCGATCCACACTCCGG
AAGGAGTCAACGTCGCCAGCGACCTCGTGTCCAAAGGGATGGCGGTGGAA
TACCACGGGGGGAAGAGGCCCGAGTGGTGA
back to top