mRNA_E_fasciculatus_S2_contig8564.16693.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8564.16693.1
Unique NamemRNA_E_fasciculatus_S2_contig8564.16693.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8564.16693.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV8_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.810e-114
Identity = 285/443 (64.33%), Postives = 298/443 (67.27%), Query Frame = 1 
Query:  127 GGGQESLALMNNYLAKVKDECKPAIYSAFISLLNAYHGNMLNVDAFLDELYVLFSPRVYLLADVKPLVDESYHQRIDELCDKVRTGGSXXXXXXXXXXVGDGFSFPPTLNVFALSPANXXXXXXXXXXXXXXXXXXXXXXXXXXXPRSTNPTRGXXXXXXXXXXXXXXXGGSSVARNGTSSPLSPPTMAAGXXXXXXXXXXXGKASAPARSNDELEGMLSLRRGKESSPSTRVLSSDLADATDIADLLSGIEEPGVDAALLDFMMCDNDNTPVLGAAAPSAEPPTLNIQQPXXXXXXXXXXPWVFSSPFSPTTDPAIPSGSGATSRTSSTKKRRASEDSPSSVQPTAAADCMPVGSTDAATSNDNXXXXXGNGSTASHSMVWSRVASAPNLTNLSCRIQATPPSSHSRGQHQXXXXXXXXXXXXXXXXXXRCSVAISNGGASK 1455
            GGGQESLALMNNYLAKVKDECKPAIYSAFI L+NAYHG+ LNVDAFLDELYVLFSPRVYLLADVKPLVDESYHQRIDELCDK RTGGSXXXXXXXXX   DG SFPPTLN  A SP +                           PRSTNP RG    XXXXXXXXXXX  SS AR+GTSS LS PTMA             GKASAPARSNDELEGML  RRGKES    RVLSSD+AD TD+ADLLSGIE PGVDA                                           PWV S PFSPT +P IPS +GATS TS TKKRR SED  S V   AAA  M  GSTDAA ++DN     G+G TAS SM+WSRV SAPNLTNLS  IQAT PS+HSRGQ  XXXXXXXXXXXXXXXXXXRCSVAISNGG SK
Sbjct:    6 GGGQESLALMNNYLAKVKDECKPAIYSAFIRLMNAYHGHTLNVDAFLDELYVLFSPRVYLLADVKPLVDESYHQRIDELCDKARTGGSXXXXXXXXX---DGLSFPPTLNALASSPGSSNGNNINSRTAPGTGGGSGIKAE----PRSTNPIRGGSGAXXXXXXXXXXXX-SSEARSGTSSLLSSPTMA----DATSSGGSSGKASAPARSNDELEGMLFRRRGKES----RVLSSDVADTTDMADLLSGIE-PGVDA-------------------------------------------PWVVSGPFSPTMEPVIPSCNGATSGTSPTKKRRVSEDRSSCVP--AAAGRMSAGSTDAAANSDNNNS--GDGRTASPSMIWSRVGSAPNLTNLSFSIQATLPSAHSRGQQXXXXXXXXXXXXXXXXXXXRCSVAISNGGTSK 384
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8564.16693.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.810e-11464.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8564contigE_fasciculatus_S2_contig8564:1400..5555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1614
Hectar predicted targeting categoryother localisation
Exons4
Cds size1614
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.874436-CDS-E_fasciculatus_S2_contig8564:1399..21131696842514.874436-CDS-E_fasciculatus_S2_contig8564:1399..2113Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8564 1400..2113 -
1696842514.8876407-CDS-E_fasciculatus_S2_contig8564:2562..26561696842514.8876407-CDS-E_fasciculatus_S2_contig8564:2562..2656Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8564 2563..2656 -
1696842514.8965647-CDS-E_fasciculatus_S2_contig8564:3038..35991696842514.8965647-CDS-E_fasciculatus_S2_contig8564:3038..3599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8564 3039..3599 -
1696842514.904879-CDS-E_fasciculatus_S2_contig8564:5310..55551696842514.904879-CDS-E_fasciculatus_S2_contig8564:5310..5555Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8564 5311..5555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8564.16693.1prot_E_fasciculatus_S2_contig8564.16693.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8564 1400..5555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8564.16693.1

>prot_E_fasciculatus_S2_contig8564.16693.1 ID=prot_E_fasciculatus_S2_contig8564.16693.1|Name=mRNA_E_fasciculatus_S2_contig8564.16693.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=538bp
MGLPLVSRRCAGGGGHSVNIVGSFGPGWRVNRACVVMTGGAGGGGQESLA
LMNNYLAKVKDECKPAIYSAFISLLNAYHGNMLNVDAFLDELYVLFSPRV
YLLADVKPLVDESYHQRIDELCDKVRTGGSGGGGGGGGGSVGDGFSFPPT
LNVFALSPANSNGNNNISSRTTAAAPGAGGGSGIKTEPRSTNPTRGGTGT
GSEAEASAAAAGGSSVARNGTSSPLSPPTMAAGTSGGGGGGGSSGKASAP
ARSNDELEGMLSLRRGKESSPSTRVLSSDLADATDIADLLSGIEEPGVDA
ALLDFMMCDNDNTPVLGAAAPSAEPPTLNIQQPQPQPQQQQQQPWVFSSP
FSPTTDPAIPSGSGATSRTSSTKKRRASEDSPSSVQPTAAADCMPVGSTD
AATSNDNSSSSSGNGSTASHSMVWSRVASAPNLTNLSCRIQATPPSSHSR
GQHQQHQPAPSSATATTSAPRPRCSVAISNGGASKQQSTGRPPAGASVNR
GGSGKGGGGGVSGGSPSNGPGGSEKSRGGGSSSSSSSS
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mRNA from alignment at E_fasciculatus_S2_contig8564:1400..5555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8564.16693.1 ID=mRNA_E_fasciculatus_S2_contig8564.16693.1|Name=mRNA_E_fasciculatus_S2_contig8564.16693.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4156bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8564:1400..5555- (Ectocarpus fasciculatus EfasUO2)
ATGGGTTTGCCTCTCGTCTCGCGCAGGTGTGCAGGGGGGGGGGGTCATTC
GGTGAACATTGTCGGCAGTTTCGGCCCGGGGTGGAGGGTCAACCGTGCGT
GCGTGGTGATGACTGGCGGGGCAGGAGGGGGGGGGCAGGAGAGCCTGGCT
CTCATGAACAACTACCTCGCGAAAGTGAAGGACGAGTGCAAGCCGGCCAT
CTACAGCGCTTTCATCTCCCTTTTGAACGCATATCACGGAAACATGTGAG
CAAAAATAAGCGCTTGCTTGTGTCTGTGCTTACTCAGCGGTTTTTATGTT
CTTGTACACACACGTCGTATTTGGATTTTGATCTGATCGTCTCCAGTCAT
CATCCCGCAGAACAACGAAAATTAATTAATTGGCGTGATGTTGTGATGTT
GTTGAGTTGGTGGTGATGCCGTTCCTCACACTTTTTCTGCGCTGCGCACG
CCTGAACTCTGCAGCCTCAGCGACGCCTGTCTGTCCGAAGACACCCACAA
GTGGCCACGCGCGGGAAGTTTACGGCAGTGCGCAGAGAAGTGGTGTACAG
ACAAAATGTGGCTTTTTTCTCGAACGGGTAGTCTTTCGGTGTTTGTACTT
GTATTTTTCTTTAAAATAGGAGCGGGAAAAAATATTTGCGAACAACAATT
TTCGTTTTTTTCCGCCCAAGAACAGACTCAAAGACTCAAATACCTCCGCT
TTTTTTCCGGTCGCGTACAGCTGACCGCCTACCACGAAAAACCTGTAGAG
ACTGCTCTAGGCTTGTGCACTGTTTTTGTATTTTATCTTTCGGACAGTTT
AACGCAGCGCAAGCATTATTCTACAGCTAGCTGTCTGTGCAGATGCCGCT
CACACAGCTCACCCACTGCAGGTATGATGTACGTACGTAGACTAATACCT
CAGTGAGTGGCATTTATTGGCATCCGGACGGTGGGTAGGAGGTACTCCGT
GCTTTGGAGCATTTAGCTATTGCGCCCGTCTATGCTACGTCAATACCATT
CATTGTATTTCCGTCGTATGCCCCCCCCCTCAAGCTTGCATGCATGCATG
CATTCATATTGTGAGGATGGACATTTTCGCGGGGGGGATGTCTCCTTCGC
CACTACTACTCGTGTCCACATCCCGGGCATAGCAGCCGTTGAAACCAATT
ATTATCTATTGGTTGGACAAGAGTAGATGATACAGAGCGATGTGGGAGGC
ACCTACATGGGCGAGCGATTGGTTTAGCGAAATTGCAAGGAAGGGCGTGG
CTTTGAGTAGCCCGCGCCGTCGTCGGAAAAAAACACAGCAGTTGCGAGGG
TCAAAACGGCGAATTTCGTACAGAGTAGAGCGCGTTTGTTTGTGCGATTC
GTCCGGTCGGTGCCGATACGTCCGGTTAGCCCGTCCCCATGTTCCCATCC
GCGCGGCAAACGATAAGCGGTTTTATGTACCGTTGTTTGCACAGCAAAAT
AACACACGTTTGTATTTGATGCGAGGAACGTTCTCGCTGTGCACCCCGAA
GCAACTAGGTGCTTCGTATCATGTACAATTATGATGTACCTCTTTTTGTT
GAGGCAACAACAACAACAACAACAACGACAACAACAAGAGGCACTCACAG
CCCGGCCTCGTGCTTGCGCATAGACAAATTACGTCCACCTTACAGAGTAT
GTAGTTCCTTGACAACAATCGATAAGGCTACTTGATATGTACCAGCAAAA
GCTTTCGCAAAGTCCAGCCGATGCAGATATCAATTTCAACCGAAATTTCA
TGTACTACGCTCTCTTCTCCCTGCGGAGGTTCTTTTCGCCGTTCGCTCCG
GATGTACATACATACATGCCGCATGCACTTGCATATCTACTTTGCCGCAT
GCACTTGCGTATTTACTTTACCGCCGGCCCGCCGTGTGTCTCCACGCACT
TGCGTATTTACTTTGCCGCCGGCCCGTCGTGTGTCTCATGTCCTACGATA
ACGCAGGCTCAACGTAGACGCCTTTCTGGACGAACTCTACGTGCTCTTCT
CTCCGCGAGTCTACCTGCTGGCGGACGTGAAGCCCCTAGTCGACGAGTCG
TACCATCAGCGCATAGACGAGCTTTGCGACAAAGTCCGCACCGGCGGCAG
TGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGTTGGGGACGGTTTCTCCT
TCCCCCCTACCCTAAACGTCTTCGCCTTGTCCCCGGCAAACAGCAACGGC
AACAACAACATCAGCAGCCGCACGACGGCGGCTGCGCCGGGAGCAGGGGG
CGGCAGCGGCATCAAGACCGAACCGCGGTCGACAAACCCCACCCGCGGTG
GCACCGGTACCGGGAGCGAGGCCGAGGCATCCGCGGCGGCGGCGGGGGGG
AGTTCTGTGGCAAGGAACGGTACCTCGTCCCCGCTCTCGCCTCCCACGAT
GGCGGCCGGGACCTCGGGTGGTGGCGGTGGGGGTGGCAGTAGCGGCAAGG
CTTCAGCTCCCGCAAGAAGCAACGACGAGCTGGAGGGGATGCTGTCTCTT
AGGCGAGGAAAAGAGAGGTGGAGTGTGTGTGTGTGTGACAGGAGTAGGAG
GAGTGGCTCAAACACTTGCATGCAGCACGTTGTCTTCTGGCCTGCCCGGG
TCACCCGACCACGTGTGCTTGTTTCATTCCCGTCGTATACCCCCCCCCCT
CAAGCTTGGAAGAATAACATCGCTGACATGGTAGAGAAATTACCCCCCCA
CCCGCAGGCATCTCGAGGACGCGTGGTCAATGGTCTAACGACTAAGGCAT
GCAATTCATAGGAGTACGCCCCCCCTCCCCCCCCCTGTAGCGACGTTGCC
ACCTTGTTGTTTTAACTGTTGCCTCGACAAAGCAGGCACGCCCAACGTGA
TTACGCCCTCCCCGCACTCTGAAACCTCTCTCACGACAAACGCTTCCAGC
TCTCCCAGCACCCGAGTGCTATCGTCGGACCTCGCGGACGCCACGGACAT
CGCGGACCTCCTGTCCGGCATCGAGGAACCAGGCGTAGATGCTGTAAGTT
CGGTTCCGCGTCCCATGACACACCGCCGCCTCATCCCGTCCCTACGATTC
CCTTCGATCAGAGACGCCCAATCGTCTGGCTGACGATCCCTCACGCGCGG
TTTGTTTTTCGGGCCGATTCACACACACACACGCCGCGCGGCGTTTGCTT
GCGTTGCCACGAACTGATCGCAAGCCGCGCGCGATATTTTTGTAAAAAAT
GCGTCACGTTGTCACCCAGCCTCGTGGCGTAGCGCGGCGGCCGCTGCCCC
TGCGGCCGCAAGGAAGAACGAACAACCAAGCCGGCCATTTGTAGTTTGGC
GAACGTTGCTGGCGTTGTTTGTCCCTCCCGACTGCTGTACTGCTACACCG
TTTCACAAGCAAGCATCCTACCTGCTGCTTCCTCCGTCCATTTGTCGTCG
TGCCTGTCTTGTCTTCTTCTCTCTCGCCTCTCGTCTATCAAGGCCCTTCT
TGACTTCATGATGTGCGACAACGATAACACCCCGGTCCTTGGCGCCGCCG
CGCCGTCCGCGGAGCCCCCAACTCTCAACATCCAACAGCCCCAGCCCCAG
CCCCAGCAGCAGCAGCAGCAGCCGTGGGTGTTTTCCAGTCCGTTCTCTCC
GACGACCGACCCGGCGATTCCTAGCGGCAGCGGGGCGACATCCCGGACGT
CCTCAACCAAGAAGAGGCGGGCATCAGAGGATTCTCCCTCTAGCGTGCAG
CCCACTGCCGCCGCAGACTGCATGCCAGTGGGCTCGACCGATGCCGCTAC
CAGCAACGACAACAGCAGCAGCAGCAGCGGCAACGGCAGCACGGCCTCAC
ACTCGATGGTGTGGAGCCGAGTGGCATCGGCTCCGAACCTTACCAACTTG
TCTTGCCGCATCCAGGCCACCCCTCCGAGTTCCCACAGCAGAGGGCAGCA
CCAGCAGCACCAGCCGGCACCGTCTTCGGCTACGGCCACCACCTCGGCGC
CTCGCCCGCGGTGTAGCGTTGCCATCTCGAACGGCGGCGCGTCGAAGCAG
CAGTCGACCGGCAGGCCCCCGGCCGGCGCGTCAGTCAACCGTGGCGGCAG
CGGCAAGGGGGGTGGGGGAGGTGTGTCCGGTGGTAGTCCCAGCAACGGCC
CGGGGGGGAGTGAGAAAAGCAGAGGCGGCGGCAGCAGCAGCAGCAGCAGC
AGCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8564:1400..5555-

>mRNA_E_fasciculatus_S2_contig8564.16693.1 ID=mRNA_E_fasciculatus_S2_contig8564.16693.1|Name=mRNA_E_fasciculatus_S2_contig8564.16693.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1614bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8564:1400..5555- (Ectocarpus fasciculatus EfasUO2)
ATGGGTTTGCCTCTCGTCTCGCGCAGGTGTGCAGGGGGGGGGGGTCATTC
GGTGAACATTGTCGGCAGTTTCGGCCCGGGGTGGAGGGTCAACCGTGCGT
GCGTGGTGATGACTGGCGGGGCAGGAGGGGGGGGGCAGGAGAGCCTGGCT
CTCATGAACAACTACCTCGCGAAAGTGAAGGACGAGTGCAAGCCGGCCAT
CTACAGCGCTTTCATCTCCCTTTTGAACGCATATCACGGAAACATGCTCA
ACGTAGACGCCTTTCTGGACGAACTCTACGTGCTCTTCTCTCCGCGAGTC
TACCTGCTGGCGGACGTGAAGCCCCTAGTCGACGAGTCGTACCATCAGCG
CATAGACGAGCTTTGCGACAAAGTCCGCACCGGCGGCAGTGGCGGCGGCG
GCGGCGGCGGCGGCGGCAGCGTTGGGGACGGTTTCTCCTTCCCCCCTACC
CTAAACGTCTTCGCCTTGTCCCCGGCAAACAGCAACGGCAACAACAACAT
CAGCAGCCGCACGACGGCGGCTGCGCCGGGAGCAGGGGGCGGCAGCGGCA
TCAAGACCGAACCGCGGTCGACAAACCCCACCCGCGGTGGCACCGGTACC
GGGAGCGAGGCCGAGGCATCCGCGGCGGCGGCGGGGGGGAGTTCTGTGGC
AAGGAACGGTACCTCGTCCCCGCTCTCGCCTCCCACGATGGCGGCCGGGA
CCTCGGGTGGTGGCGGTGGGGGTGGCAGTAGCGGCAAGGCTTCAGCTCCC
GCAAGAAGCAACGACGAGCTGGAGGGGATGCTGTCTCTTAGGCGAGGAAA
AGAGAGCTCTCCCAGCACCCGAGTGCTATCGTCGGACCTCGCGGACGCCA
CGGACATCGCGGACCTCCTGTCCGGCATCGAGGAACCAGGCGTAGATGCT
GCCCTTCTTGACTTCATGATGTGCGACAACGATAACACCCCGGTCCTTGG
CGCCGCCGCGCCGTCCGCGGAGCCCCCAACTCTCAACATCCAACAGCCCC
AGCCCCAGCCCCAGCAGCAGCAGCAGCAGCCGTGGGTGTTTTCCAGTCCG
TTCTCTCCGACGACCGACCCGGCGATTCCTAGCGGCAGCGGGGCGACATC
CCGGACGTCCTCAACCAAGAAGAGGCGGGCATCAGAGGATTCTCCCTCTA
GCGTGCAGCCCACTGCCGCCGCAGACTGCATGCCAGTGGGCTCGACCGAT
GCCGCTACCAGCAACGACAACAGCAGCAGCAGCAGCGGCAACGGCAGCAC
GGCCTCACACTCGATGGTGTGGAGCCGAGTGGCATCGGCTCCGAACCTTA
CCAACTTGTCTTGCCGCATCCAGGCCACCCCTCCGAGTTCCCACAGCAGA
GGGCAGCACCAGCAGCACCAGCCGGCACCGTCTTCGGCTACGGCCACCAC
CTCGGCGCCTCGCCCGCGGTGTAGCGTTGCCATCTCGAACGGCGGCGCGT
CGAAGCAGCAGTCGACCGGCAGGCCCCCGGCCGGCGCGTCAGTCAACCGT
GGCGGCAGCGGCAAGGGGGGTGGGGGAGGTGTGTCCGGTGGTAGTCCCAG
CAACGGCCCGGGGGGGAGTGAGAAAAGCAGAGGCGGCGGCAGCAGCAGCA
GCAGCAGCAGCAGC
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