mRNA_E_fasciculatus_S2_contig8558.16684.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8558.16684.1
Unique NamemRNA_E_fasciculatus_S2_contig8558.16684.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK29_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 7.830e-149
Identity = 272/385 (70.65%), Postives = 288/385 (74.81%), Query Frame = 1
Query:  190 MAIPFFRSGDDDDDALSRWSHLNHKVEEYRQDLVTAVQSLDMIINTLESAAAPKANARAGDMPGEGMRRLAAKLRRKLNMMPPRWQVNADVLTCLLRPVPFVAGLPVPSPPRPPTPPATSNYDTDQDT----GGPVGKGIEYDSSDAIDIADADGDVSDAGGGKEGDARTKQHEAVRVDRGDDATGESFSAGSAGPA---------------AAEERRAMPVPIFQGMGGGDXXXXXXXXXDGKAGSKKRTGFHSYDDTHQIFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQE--DGTAARHSAGGRDDSYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPACGRTANVLVPGAGLGRLAAEVAARGYASVHANELSTT 1281
            MAIPFFRSG+DDD ALSRWSHLNHKVEEY+QDLV AVQSLDMII TLESAAAPKAN RAGDMPGEGMRRLAAKLRRKLN MPPRWQVNADVL+ LLRPVPFVAGLPVP PPRPP PPATS YD+DQDT      PVGK  E DSS  ID+  ADGDVSDAGGGKEG ARTKQ +A RV  G DATGE FSAGS                   AAEERRA+PVPIFQG+G GDXXXXXXXX   KAGSK RTGFHSYD+THQIFTHILRDWTSEGDSVRAAVY+PLL+ALDD FG QE    T+ R ++ G  D+                                PACGRTANVLVPGAGLGRLA E+AARGYASVHANELSTT
Sbjct:    1 MAIPFFRSGNDDD-ALSRWSHLNHKVEEYKQDLVKAVQSLDMIITTLESAAAPKANVRAGDMPGEGMRRLAAKLRRKLNKMPPRWQVNADVLSWLLRPVPFVAGLPVPDPPRPPIPPATSKYDSDQDTTIDTSRPVGKDREDDSSTGIDVV-ADGDVSDAGGGKEGVARTKQQQAGRVAPGGDATGEDFSAGSXXXXXXXXXXXXXXXXXXXAAEERRAIPVPIFQGVGNGDXXXXXXXX---KAGSKTRTGFHSYDETHQIFTHILRDWTSEGDSVRAAVYSPLLKALDDRFGRQEAASSTSGRGNSDGLSDT----------DGDRGGGSRCGAQAGPPPATTPPACGRTANVLVPGAGLGRLATEIAARGYASVHANELSTT 370          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII3_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 1.470e-118
Identity = 214/306 (69.93%), Postives = 228/306 (74.51%), Query Frame = 1
Query:  916 IFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQEDGTAARHSAGGRDDSYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPACGRTANVLVPGAGLGRLAAEVAARGYASVHANELSTTMLSSCYWLMEALRGADFTGTAATPTSPLTRVGRKQHENGDASPSSXXXXXXXXXVPGRDD--VGDCGLGADEDGGTTHGEAGGGREGGGGPVASGKGFFKFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATI 1827
            IFTHILRDWTSEG +VRAAVY+PLL+ALDD F  QE  +    SAGGR DSY +G                            PACGRTANVLVPGAGLGRLA E+AARGYASVHANELSTTMLSSCYWLMEALR ADFTGT  TPTSPL R  R+QH+   +S + XXXXX    V  RDD  VGD GLGADED   T  +A  GREGGGG     KGF +FYPFLNDATHNEMDGEARFRSVLFPDPEGRALLA+ASGRLSFQAGEFSETYGGVGGPYE AFDAVVTSFFVDTAPNVVQ  A +
Sbjct:    2 IFTHILRDWTSEGAAVRAAVYSPLLKALDDRFSRQEGAS----SAGGRGDSYSNGDGLSDTDGDRGGGGRCGGQADPPPATTPPACGRTANVLVPGAGLGRLATEIAARGYASVHANELSTTMLSSCYWLMEALRRADFTGTP-TPTSPLPRASREQHDASLSSSTPXXXXXAVCCVSDRDDDVVGDFGLGADEDEPATENDAEEGREGGGG-----KGFLEFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLAQASGRLSFQAGEFSETYGGVGGPYEGAFDAVVTSFFVDTAPNVVQVRAAV 297          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: N2227-like (protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.880e-31
Identity = 151/401 (37.66%), Postives = 193/401 (48.13%), Query Frame = 1
Query:  898 YDDTHQIFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQEDGTAARHSAGGRDDSYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPACGRTANVLVPGAGLGRLAAEVAARGYASVHANELSTTMLSSCYWLME-ALR-----GADFTGTAATPTSPLTRVGRKQHENGDASPSSXXXXXXXXXVPGRDDVGDCGLGADEDGGTTHGEAGGGREGGGGPVASGKGFFKFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYG----GVGGPYE----AAFDAVVTSFFVDTAPNVVQYVATIRRALRPGGVWINCGPLHWHNHSALALSLDEMLVLVEGSGFRLEEGVLFGVRAGQRSGVDVRRLARPSTCGQPRGALL 2058
            YDD + +  H++RDW+ +G + RAA  AP+L  L ++    +  T                       XXXXXXXXXXXXXXXXXXXXX        +LVPGAGLGRLA E+AARG+  V ANE S  M ++ + ++  ALR     GAD                             XXXXXXXXX                 GG T                        YP+L+DA H+ +  EARFR+V FPD  GRA   RA  RLS+  G+F E YG    G  G        AFD VVT FF+DTAP+V++YVA +  ALR GGVW+N GPLH+H  S +  S DE+  ++  +GF +       +RA Q    + RR    ST  +    LL
Sbjct:  166 YDDAYAVLCHVVRDWSDDGAAARAAALAPILACLREYLPLPQCATXXXXXX-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXVPLILVPGAGLGRLAVELAARGW-RVRANERSACMCAAAHAIIGGALRDCRGGGADADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIT-----------------------VYPYLHDAPHDCVRSEARFRAVAFPDAAGRAAARRARRRLSWDCGDFLELYGPRRRGRSGSXXXXXXGAFDGVVTCFFLDTAPDVLEYVAALTHALRRGGVWVNLGPLHFHRESRVVASADELTAVLREAGFEV-------LRAAQLPPCEYRRGEPDSTATEQFRPLL 518          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPV2_FISSO)

HSP 1 Score: 107 bits (266), Expect = 4.930e-21
Identity = 98/361 (27.15%), Postives = 136/361 (37.67%), Query Frame = 1
Query:  880 RTGFHSYDDTHQIFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQEDGTAARHSAGGRDDSYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPACGRTANVLVPGAGLGRLAAEVAARGYASVHANELSTTMLSSCYWLMEALRGADFTGTAATPTSPLTRVGRKQHENGDASPSSXXXXXXXXXVPGRDDVGDCGLGADEDGGTTHGEAGGGREGGGGPVASGKGFFKFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATIRRALRP-GGVWINCGPLHWHNHSALALSLDEMLVLVEGSGFRLEE 1959
            RT  HSYDD HQ+  HI+RDWT+EG  +R  +Y   L  +D               +G R                                           ++VPGAG+GRLA E+A   +A V A E S                    G AA   S L R   KQ                                                        SG      +P+ +D   NE++   R+  V +PD +    L+   G LS+   +F    G V    ++ FD VVT FF+DTA NV++Y+  I + LRP GG+W+N GPL WH  S +  S DE+  ++E  GF++ E
Sbjct:  167 RTADHSYDDPHQVVAHIVRDWTAEGKQIRRQLYDWCLSKID--------------KSGLR-------------------------------------------IMVPGAGMGRLAWELARNKHAWVEALESSV-------------------GMAAAAASILQR---KQ--------------------------------------------------------SGM----IHPYSSDQLSNEVNSSQRYLRVQYPDVDD---LSTKQGHLSYTVADFLSLNGVVNN--QSKFDVVVTCFFLDTASNVLEYITMITKLLRPKGGMWVNVGPLQWHQKSQIRFSADELYNIIEEVGFQIME 383          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZ25_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.930e-21
Identity = 106/371 (28.57%), Postives = 138/371 (37.20%), Query Frame = 1
Query:  856 DGKAGSKKRTGFHSYDDTHQIFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQEDGTAARHSAGGRDDSYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPACGRTANVLVPGAGLGRLAAEVA-ARGYASV-HANELSTTMLSSCYWLMEALRGADFTGTAATPTSPLTRVGRKQHENGDASPSSXXXXXXXXXVPGRDDVGDCGLGADEDGGTTHGEAGGGREGGGGPVASGKGFFKFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATIRRALRP---GGVWINCGPLHWHNHSALALSLDEMLVLVEGSGFRL 1953
            DG   SK+  G   YD   Q+ TH+ RDWT  G   R      LL+ L     W E+    + + GG D    S                                     +LVPGAGLGRLA ++A A G   V  AN+ S  M  +                A +  + +  +  K   + D   SS                            TT                        YPF+ D   NE+D   RF SV+FPD        R    LS+  G+F  TY          FDA+ TSFFVDTA NV +YVA ++  LR    G VWIN GP+ WH  + L  ++DE   ++  SGF L
Sbjct:  206 DGDINSKESEG---YDSALQVITHVARDWTDGGHQCRQMTNGWLLKEL---LSWHENTFKRKINGGGVDQDGIS-------------------------------------ILVPGAGLGRLAFDIATATGLKGVVEANDSSAIMAVA----------------ARSMLANVLAMNDKSDNDSDKKTSSL---------------------------TT-----------------------IYPFVLDPKTNEVDSRLRFDSVVFPDDLAIEAARRTLPNLSYTVGDFIATYSSPA--KRGKFDAIATSFFVDTAANVYEYVAIMKHLLRSSPEGSVWINVGPIQWHPCALLRPTVDEFRDILTASGFEL 465          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBY6_FISSO)

HSP 1 Score: 105 bits (263), Expect = 1.180e-20
Identity = 98/357 (27.45%), Postives = 134/357 (37.54%), Query Frame = 1
Query:  892 HSYDDTHQIFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQEDGTAARHSAGGRDDSYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPACGRTANVLVPGAGLGRLAAEVAARGYASVHANELSTTMLSSCYWLMEALRGADFTGTAATPTSPLTRVGRKQHENGDASPSSXXXXXXXXXVPGRDDVGDCGLGADEDGGTTHGEAGGGREGGGGPVASGKGFFKFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATIRRALRP-GGVWINCGPLHWHNHSALALSLDEMLVLVEGSGFRLEE 1959
            HSYDD HQ+  HI+RDWT+EG  +R  +Y   L  +D                                                      P       +LVPGAG+GRLA E+A   +A V A E S                    G AA   S L R   KQ                                                        SG      +PF +D   NE++   R+  V +PD +   +     G LS+   +F  +   V G  ++  DAVVT FF+DTA NV++Y+A I + L+P GG+W+N GPL WH  S + LS DE+  L+E  GF++ E
Sbjct:  169 HSYDDPHQVVAHIVRDWTAEGKQIRRQLYDWCLSKID-----------------------------------------------------KPGL----RILVPGAGMGRLAWELARNKHAWVEALESSV-------------------GMAAAAASILQR---KQ--------------------------------------------------------SGM----IHPFSSDQFSNEVNSSHRYLRVQYPDVDDVEIF---EGHLSYTVADFL-SLNSVLGNNQSQLDAVVTCFFLDTATNVLEYIAMITKLLKPKGGMWVNVGPLQWHQKSLIRLSADELYSLIEEVGFKIME 382          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WRG4_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 4.630e-19
Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 1570 FKFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATIRRALRPGGVWINCGPL--HWHNHS-----ALALSLDEMLVLVEGSGFRLEE 1959
            +  +P++  AT N++  E + R V  PD    +++ +  G LS  AG+F E YG         +DAVVT FF+DTA NVVQY+  I  AL+PGGVW+N GPL  HW   S     ++ LSL E+  + +  GFRL++
Sbjct:   55 YTIHPWVT-ATCNQLSDEEQLRGVTIPDVHPASIVTQG-GLLSMAAGDFVEVYGSA--EQAGQWDAVVTCFFIDTAHNVVQYLEVIHNALKPGGVWVNLGPLLYHWAESSGVDELSVELSLGEIRRVAQAMGFRLDQ 187          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZIR7_9FUNG)

HSP 1 Score: 89.7 bits (221), Expect = 1.070e-17
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 1612 MDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATIRRALRPGGVWINCGPLHWH-----NHSALALSLDEMLVLVEGSGFRLE 1956
            M  E + RSV  PD     LL+   G  S  +G+F ETY    G +    +A+V+ FF+DTA N + Y+ TI  AL+PGG+WIN GPL WH     N  ++ L+ DE++++++  GF ++
Sbjct:    1 MSSEDQLRSVKVPDVAPVELLSSIQGNFSMTSGDFVETYQNDTGNW----NAIVSCFFLDTANNPLTYLETIYNALKPGGIWINIGPLLWHFENDPNKVSIELTFDELILIIKKIGFTID 116          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: N2227-domain-containing (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHI5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.070e-17
Identity = 63/169 (37.28%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 1579 YPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEF-SETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATIRRALRPG-GVWINCGPLHWHNHSALALSLDEMLVLVEGSGFRLEEGVLFGVRAGQRSGVDVRRLARPSTCGQPRGALLAFVCERS 2079
            +P++ DA  NE+D + RF SV FPD     +     G LS+  G F  E            FDAVVT FF+DTA N+ +Y+ TI++ L+P  GVWIN GP+ WHN++ L  S+DE+  L+E  G+ +    +       R   D    AR ++    R   L FV  RS
Sbjct:  335 HPYVLDAMSNEVDSKRRFGSVSFPDTSINGIFD-VRGSLSYTVGSFVGENDDYYQRQRAGHFDAVVTCFFIDTATNIYEYLDTIKKLLKPETGVWINVGPVQWHNNAVLRPSVDELRDLIESYGWSIRVWSIDNTAIPYRDESDAHVAARTTSYEGYRP--LRFVAIRS 500          
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Match: N2227-domain-containing (protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316Z7L5_9BASI)

HSP 1 Score: 96.7 bits (239), Expect = 2.070e-17
Identity = 98/365 (26.85%), Postives = 133/365 (36.44%), Query Frame = 1
Query:  874 KKRTGFHSYDDTHQIFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQEDGTAARHSAGGRDDSYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPACGRTA-NVLVPGAGLGRLAAEVAARGYASVHANELSTTMLSSCYWLMEALRGADFTGTAATPTSPLTRVGRKQHENGDASPSSXXXXXXXXXVPGRDDVGDCGLGADEDGGTTHGEAGGGREGGGGPVASGKGFFKFYPFLNDATHNEMDGEARFRSVLFPDPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAPNVVQYVATIRRALRPGGVWINCGPLHWHNHS----ALALSLDEMLVLVEGSGFRL 1953
            ++R      D        ++RDW+ EG++ R A Y P+L ALD  FG     T A                                           A  R A  VLVPGAGLGRLA EVA +GY S   NE S  ML + +W++                        ++HE+                                                             YP+++ ++ N    +   + V  PD     L        S  AGEF + Y        AA+DAV T +FVDTA NVV+Y+  +   L  GG+WIN GPL WH  +    ++ L+L+EML LVE  GF L
Sbjct:  197 RRRVADQDLDKIRSTIKQLVRDWSDEGNAEREAAYGPVLDALDARFG-----TIA-------------------------------------------AADRPAVRVLVPGAGLGRLAFEVAWQGY-SCQGNEYSFFMLLASHWILNK--------------------SARRHEH-----------------------------------------------------------TIYPYVHSSS-NWRSAQDLLQGVRIPDVNPSDLPPHVD--FSMVAGEFVDVYSKA--QEGAAWDAVATVYFVDTARNVVRYLEVLNHVLPVGGIWINAGPLLWHYENNGDLSIELTLEEMLGLVEQMGFEL 428          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8558.16684.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.830e-14970.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.470e-11869.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
N2227-like1.880e-3137.66protein-domain-containing protein n=1 Tax=Tribonem... [more]
Uncharacterized4.930e-2127.15protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Hypothetical5.930e-2128.57protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Uncharacterized1.180e-2027.45protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Hypothetical4.630e-1940.88protein (Fragment) n=1 Tax=Chlamydomonas leiostrac... [more]
Uncharacterized1.070e-1739.17protein n=1 Tax=Smittium megazygosporum TaxID=1333... [more]
N2227-domain-containing1.070e-1737.28protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 ... [more]
N2227-domain-containing2.070e-1726.85protein n=1 Tax=Tilletiopsis washingtonensis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8558contigE_fasciculatus_S2_contig8558:675..5609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score97.4
Seed ortholog evalue2.7e-17
Seed eggNOG ortholog159749.K0SW67
Model size2116
KEGG rclassRC00003,RC00333
KEGG koko:K19787
KEGG ReactionR02144
KEGG Pathwayko00340,map00340
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG free text desc.N2227
EggNOG OGs2XCRM@2836,KOG2798@1,KOG2798@2759
EC2.1.1.22
Cds size2106
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8558.16684.1prot_E_fasciculatus_S2_contig8558.16684.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8558 675..5599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.022106-CDS-E_fasciculatus_S2_contig8558:674..9771696842514.022106-CDS-E_fasciculatus_S2_contig8558:674..977Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 675..977 +
1696842514.0352638-CDS-E_fasciculatus_S2_contig8558:1395..15391696842514.0352638-CDS-E_fasciculatus_S2_contig8558:1395..1539Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 1396..1539 +
1696842514.0473373-CDS-E_fasciculatus_S2_contig8558:1838..23061696842514.0473373-CDS-E_fasciculatus_S2_contig8558:1838..2306Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 1839..2306 +
1696842514.0574675-CDS-E_fasciculatus_S2_contig8558:3172..35391696842514.0574675-CDS-E_fasciculatus_S2_contig8558:3172..3539Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 3173..3539 +
1696842514.0680952-CDS-E_fasciculatus_S2_contig8558:3761..41071696842514.0680952-CDS-E_fasciculatus_S2_contig8558:3761..4107Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 3762..4107 +
1696842514.0782685-CDS-E_fasciculatus_S2_contig8558:4578..47621696842514.0782685-CDS-E_fasciculatus_S2_contig8558:4578..4762Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 4579..4762 +
1696842514.0903509-CDS-E_fasciculatus_S2_contig8558:5016..51631696842514.0903509-CDS-E_fasciculatus_S2_contig8558:5016..5163Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 5017..5163 +
1696842514.1058602-CDS-E_fasciculatus_S2_contig8558:5452..55991696842514.1058602-CDS-E_fasciculatus_S2_contig8558:5452..5599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8558 5453..5599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.120421-UTR-E_fasciculatus_S2_contig8558:5599..56091696842514.120421-UTR-E_fasciculatus_S2_contig8558:5599..5609Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8558 5600..5609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8558.16684.1

>prot_E_fasciculatus_S2_contig8558.16684.1 ID=prot_E_fasciculatus_S2_contig8558.16684.1|Name=mRNA_E_fasciculatus_S2_contig8558.16684.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=702bp
MLLSSQRVVLLLTLVTTAVGVLLLCRNYQRAWQFQQQFQQHPGASGSSNG
GSGNVSGGQRPAQMAIPFFRSGDDDDDALSRWSHLNHKVEEYRQDLVTAV
QSLDMIINTLESAAAPKANARAGDMPGEGMRRLAAKLRRKLNMMPPRWQV
NADVLTCLLRPVPFVAGLPVPSPPRPPTPPATSNYDTDQDTGGPVGKGIE
YDSSDAIDIADADGDVSDAGGGKEGDARTKQHEAVRVDRGDDATGESFSA
GSAGPAAAEERRAMPVPIFQGMGGGDAGGGGGGGGDGKAGSKKRTGFHSY
DDTHQIFTHILRDWTSEGDSVRAAVYAPLLQALDDHFGWQEDGTAARHSA
GGRDDSYCSGGGLSDTDGGHRGGGSCGGQGDPPPATTPPACGRTANVLVP
GAGLGRLAAEVAARGYASVHANELSTTMLSSCYWLMEALRGADFTGTAAT
PTSPLTRVGRKQHENGDASPSSPPPPPPPCCVPGRDDVGDCGLGADEDGG
TTHGEAGGGREGGGGPVASGKGFFKFYPFLNDATHNEMDGEARFRSVLFP
DPEGRALLARASGRLSFQAGEFSETYGGVGGPYEAAFDAVVTSFFVDTAP
NVVQYVATIRRALRPGGVWINCGPLHWHNHSALALSLDEMLVLVEGSGFR
LEEGVLFGVRAGQRSGVDVRRLARPSTCGQPRGALLAFVCERSSDRSLYH
V*
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mRNA from alignment at E_fasciculatus_S2_contig8558:675..5609+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8558.16684.1 ID=mRNA_E_fasciculatus_S2_contig8558.16684.1|Name=mRNA_E_fasciculatus_S2_contig8558.16684.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4935bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8558:675..5609+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGTTGTCGAGCCAGCGCGTCGTGCTACTACTAACCTTAGTCACTAC AGCAGTGGGAGTGCTGCTGCTGTGTCGAAATTATCAACGAGCTTGGCAGT TTCAACAGCAGTTTCAACAGCATCCGGGAGCATCCGGGAGCAGTAACGGT GGCAGTGGCAACGTGAGTGGGGGACAACGACCCGCGCAAATGGCGATCCC TTTTTTTCGGAGTGGGGATGATGACGACGACGCCCTTAGCAGATGGAGCC ACCTGAATCACAAGGTGGAGGAGTACAGGCAGGATCTCGTCACGGCCGTA CAGGTGTGACACGTGCTAGCTAAAACAATGAGAGCAGTCAGTATGCTATT ATAATAGCTAACAGTTGTCAGTCTATTGTTCAGTGATGTTTGCTACGAGT GTCGGGGTTCGATTGAATTGTGGGATGTTTACCTATTTGCGGCAGCACCA AGCAAGGTGCTTTGTGTCTCAGGCGTTTACTATGTTTTTCGCACTAGGAT TGGTATAAAGACTTCGCTTCGCACGCATCTGCACGTGTTACCCATGTATT TTGATCCGATTGGCAGAACAAGGCGTTCCAGGTTCTACCCCATTGTCCGT TGCACCTTTCATACATTGAGGATAGTTCATTTACAGTACCACAGATAGAC ATTTCCAGGTATACACTGCTGTGTAGGTGCTTTTAACTATCATTATTGTA CCTTTTTCCCCGAACGCCCAGAGTTTGGACATGATTATCAACACCCTGGA GAGTGCGGCAGCACCGAAGGCGAATGCGAGGGCCGGGGACATGCCTGGGG AAGGGATGCGCCGCCTTGCTGCCAAACTCCGGCGCAAGTTGAACATGATG CCGCCACGGTGGCAGGTGTGTAGTCTACCCGTGTCACGAACCAAACACTC CTTTGTGCCGTACTCTTAGATACCTTGCGGTGTATTTACGTTGTCACCGA CACGACTTCGCAAGGCACCGGTAGATCCTTGGTGATACAGTACCCCTTCT CTCGTCCTGTGTATTGCTTGCGTGTTTATTGGTCGGTAGGGGGGCGCACC GTCGCCAGGTTCTGTCATCGCTTCCCCACCGGACATGTCAGCCACGCGTG AACTGCTCTTCTTCCCCAACCCGCTATTATTGTCCGCCCCCCCGCAACTA TCCCACCACCACAGGTCAACGCGGACGTCTTGACATGTCTGTTGCGCCCC GTGCCCTTCGTGGCTGGGCTTCCGGTTCCGTCTCCTCCACGCCCTCCCAC TCCGCCCGCCACGAGCAACTACGATACCGACCAGGACACTGGTGGGCCCG TGGGGAAGGGCATAGAATACGACAGCAGCGATGCCATCGATATTGCTGAT GCCGATGGTGACGTGTCCGATGCAGGCGGGGGCAAAGAAGGCGATGCGCG AACAAAACAACATGAGGCGGTGAGGGTGGACCGAGGGGACGACGCGACTG GAGAAAGTTTTTCCGCAGGTTCCGCGGGACCCGCAGCGGCCGAGGAGCGG AGAGCGATGCCTGTACCGATTTTTCAAGGGATGGGGGGTGGGGACGCGGG CGGCGGCGGCGGCGGCGGCGGTGATGGAAAGGCGGGTTCGAAAAAACGCA CGGGCTTCCACTCGTACGACGACACGCATCAGGTCAGAAAACAAGCACGC GGCGGAGGGAAGGCACTAATCCCGGGGGAGTTCGTTCTGTTCCAAGCGAT TTTTTGGTTGTGTCGTGTAGCCAATCGACGTTACACAAATCCACATGGTC CGTGACATTCGTGTTTCAGGTCCGCTCCTTCTTGTGCATCGAATTTCGCA TGTCTGTCCAAATTTTAACTCAATCTCTTGGCCCTGACGATACCCTTCCG CGCACGTTGGGTTGCCCGCGCCACGACATCCATTTTTCGGAAGCTGTTAT GTCTCTACACTTACAACCGTTCTCAGTACCGTCGAATCTCTGCAATGGAC GCAGAAGAATTACTTTAACCCTCCTAGTACTGGAAGCCCAAATGGGGACA CACTGGGGACACATCACTCAAACGCCTGTTTACCGCACCGCTGTCACCCT AGGCACCGCTGTGTGAAGCACACGTGAGAACCCTTGGTCTGTCATGCTTG GCTGAGGTGGTACGCTGTGAGGCATGCTGTGTGGTGCCTGTCCTCGGCCT CTGACTTAACCAATTCCCAGGCCGCGTGTCCCCTAGGCCCTAGGTCGTAA AATTGTACATCGCCTAGAACTGGATAAATTTGCTGACTTGGCTTCAGTTT GAAAAGTGTCCCCATGTGTTTTGGGGACACTCTTCATACTGAAACCAAGT CACCCTTGGTCTGGCAAGGAGCTCAGATTTGGAGGGACTGTAACCCCTCG ACCAATGGCTTACACGCATTTTTGCGACATTTTATTTTTGCGGAGGGACG GGGTACTAGGAGGGTTAAACGCTTGTACCGAGCCACTACCCCCCCCACCC TCCACTTTCCCCACGCTTTCCCCCTGTACACGTGTCATCATCTTCAAGAT CTTCACTCACATCTTGAGAGACTGGACCTCGGAGGGAGACTCCGTTAGGG CCGCCGTCTACGCCCCGCTCCTGCAAGCGCTGGACGACCACTTCGGCTGG CAGGAAGACGGTACCGCTGCTCGTCACAGTGCGGGCGGCCGTGATGATAG TTATTGTAGTGGTGGTGGGCTGAGTGACACGGACGGCGGCCACCGCGGCG GCGGCAGTTGTGGTGGTCAGGGGGATCCACCACCGGCTACTACGCCGCCT GCTTGTGGGCGCACGGCAAACGTTTTGGTGCCCGGTGCCGGCCTCGGGCG CTTGGCAGCAGAGGTGGCGGCGAGAGGGTACGCGAGCGTCCACGCGAACG AGCTGTCCACGACCAGTTGAGTGCCGTTTCGCTCTGCTTTAGCCGTTGTT GGGGTGCGCACCGCGCCGATCTGGCTCAGCTCGTACGCCTAGCGTTCACA TAAAAGGTAGACTTTGATGCCTCGCCATCTCCCGTTGAAGAAGTTGCCGT GAGCGAGCGATGTTCCCATCCAGCGCCCCCCCCCTCTTTCGCCGAACATC CTTCATTCACCCTCTACCCCGCGCCATGTGGAAACAGTGCTATCATCGTG CTACTGGTTGATGGAGGCGCTACGAGGCGCCGACTTCACTGGTACAGCAG CCACCCCTACATCCCCGTTGACGCGCGTCGGCAGAAAGCAGCACGAGAAC GGGGACGCTTCGCCGTCGTCGCCGCCGCCGCCGCCGCCGCCGTGTTGTGT GCCGGGTCGCGACGACGTCGGCGATTGCGGGCTTGGTGCCGACGAGGACG GGGGTACGACACACGGTGAGGCAGGAGGAGGACGGGAAGGAGGAGGAGGA CCGGTCGCGTCAGGGAAAGGGTTCTTCAAGTTCTATCCGTTCCTGAACGA CGCCACCCACAACGAAATGGACGGCGAGGCTCGGTAAGGAACCGGAGCGC GGCAGGCTCGGCGAAAGATTATCTGTAGAGACGATGCGAGGATGCGAGGT CGGGACCACGATGGGGGCGCGGGAGAAGTCTTAGTCTTTGGAGTAAAGGA TCTGCAGATGTGGAGATTGTCAACATGGAGGGAGTGTGTGGCCCCTGTAC TCTACAAGGAACGTCGAGGGGCCGTTTACGCCAGGGTTTGGCCGTTTTCG CCATTGCTGCAATCGTTCCTCCGTCGGTACGGTGCTTCATAGTCTAGCGT AGATTAGTTTCTGGTGTCTTGAATCGCTCGGCGACACTACACCAAACAGT CCTGGCGCCCCCACCCTCAAACGAAGCACGCCCCCGCTCATAGAAAATCC GCCCTGCGTGCTGCCCTTCAGGCAAGAATAAAGACAGGCCACACCCAGTG TTGCAAACACGACGGAGAGCCCACTAACGTATGACCCGTATCCCCCCTCA TCAGGTTTCGTTCTGTCCTGTTTCCGGACCCCGAGGGACGGGCCTTGCTT GCGCGAGCGTCCGGTAGGCTGAGCTTCCAGGCCGGAGAATTCTCGGAGAC TTACGGCGGGGTGGGGGGGCCGTACGAAGCCGCCTTCGACGCCGTGGTTA CGAGCTTCTTCGTCGACACCGCTCCCAATGTAGTACAGGTGAGGACGGCC GGGTCGTGCGCCGGGGGGGCGCGAGGAACGCGGACGCTCGTGTGTTGGAG TGCATGTACGCACCGTCGCAGTTCTGTGAGAGCCTGCGCTGTTCTACCAA TTTGATTGAGGGGTAGCTTACGGCACGCACTTTTTTCTGTTTGGCTCGCC ACATGGCCCACAACAGAGTCCTGTCCTACCCCCCCCCTAAAAACAAAAAA ATGGTTTTATCCATCCTGCCGTCTGTCTCCCCGCACAAATAGTACGTCGC GACCATCCGGCGAGCGTTGAGGCCCGGCGGGGTGTGGATCAACTGCGGCC CGCTGCACTGGCACAACCACTCGGCTCTCGCCTTGAGCCTCGACGAGATG CTGGTGCTGGTGGAGGGCTCCGGCTTCCGGCTGGAGGAGGTGAAGCACCT CCCCCCTTCTCCCTACAGGGTGGAGGACGGCGGGGGTTCGCTGAGGGTGG ACGAGTTTAGGCCGGTGTTGTGGGTTGCGGTTTCGGAGGGTGGGCCAGCA TAGTGTTGTGGAAATTTTGTCGGGCATCAAACGGCGGCAGGGAGGGCAGT ATGAGGCGGGAAGGGCGATGGGTGTTTTCCTGCCTCTGGGCGAACATGGC TCTCCTTTGTTTGCGTAGCCGTTTCAACGTTCGCGTTTTGTGTGTATGCT ATGCTATCCTGTCCTATCCGGTGAACAGGGGGTATTGTTCGGTGTACGTG CGGGGCAACGTTCCGGGGTCGACGTGAGACGACTTGCACGTCCATCCACG TGTGGACAGCCGCGTGGCGCTTTGCTTGCGTTTGTTTGCGAACGCAGCAG TGACCGCAGTTTGTACCATGTGTGAGTCTGCCGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8558:675..5609+

>mRNA_E_fasciculatus_S2_contig8558.16684.1 ID=mRNA_E_fasciculatus_S2_contig8558.16684.1|Name=mRNA_E_fasciculatus_S2_contig8558.16684.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2106bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8558:675..5609+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGTTGTCGAGCCAGCGCGTCGTGCTACTACTAACCTTAGTCACTAC
AGCAGTGGGAGTGCTGCTGCTGTGTCGAAATTATCAACGAGCTTGGCAGT
TTCAACAGCAGTTTCAACAGCATCCGGGAGCATCCGGGAGCAGTAACGGT
GGCAGTGGCAACGTGAGTGGGGGACAACGACCCGCGCAAATGGCGATCCC
TTTTTTTCGGAGTGGGGATGATGACGACGACGCCCTTAGCAGATGGAGCC
ACCTGAATCACAAGGTGGAGGAGTACAGGCAGGATCTCGTCACGGCCGTA
CAGAGTTTGGACATGATTATCAACACCCTGGAGAGTGCGGCAGCACCGAA
GGCGAATGCGAGGGCCGGGGACATGCCTGGGGAAGGGATGCGCCGCCTTG
CTGCCAAACTCCGGCGCAAGTTGAACATGATGCCGCCACGGTGGCAGGTC
AACGCGGACGTCTTGACATGTCTGTTGCGCCCCGTGCCCTTCGTGGCTGG
GCTTCCGGTTCCGTCTCCTCCACGCCCTCCCACTCCGCCCGCCACGAGCA
ACTACGATACCGACCAGGACACTGGTGGGCCCGTGGGGAAGGGCATAGAA
TACGACAGCAGCGATGCCATCGATATTGCTGATGCCGATGGTGACGTGTC
CGATGCAGGCGGGGGCAAAGAAGGCGATGCGCGAACAAAACAACATGAGG
CGGTGAGGGTGGACCGAGGGGACGACGCGACTGGAGAAAGTTTTTCCGCA
GGTTCCGCGGGACCCGCAGCGGCCGAGGAGCGGAGAGCGATGCCTGTACC
GATTTTTCAAGGGATGGGGGGTGGGGACGCGGGCGGCGGCGGCGGCGGCG
GCGGTGATGGAAAGGCGGGTTCGAAAAAACGCACGGGCTTCCACTCGTAC
GACGACACGCATCAGATCTTCACTCACATCTTGAGAGACTGGACCTCGGA
GGGAGACTCCGTTAGGGCCGCCGTCTACGCCCCGCTCCTGCAAGCGCTGG
ACGACCACTTCGGCTGGCAGGAAGACGGTACCGCTGCTCGTCACAGTGCG
GGCGGCCGTGATGATAGTTATTGTAGTGGTGGTGGGCTGAGTGACACGGA
CGGCGGCCACCGCGGCGGCGGCAGTTGTGGTGGTCAGGGGGATCCACCAC
CGGCTACTACGCCGCCTGCTTGTGGGCGCACGGCAAACGTTTTGGTGCCC
GGTGCCGGCCTCGGGCGCTTGGCAGCAGAGGTGGCGGCGAGAGGGTACGC
GAGCGTCCACGCGAACGAGCTGTCCACGACCATGCTATCATCGTGCTACT
GGTTGATGGAGGCGCTACGAGGCGCCGACTTCACTGGTACAGCAGCCACC
CCTACATCCCCGTTGACGCGCGTCGGCAGAAAGCAGCACGAGAACGGGGA
CGCTTCGCCGTCGTCGCCGCCGCCGCCGCCGCCGCCGTGTTGTGTGCCGG
GTCGCGACGACGTCGGCGATTGCGGGCTTGGTGCCGACGAGGACGGGGGT
ACGACACACGGTGAGGCAGGAGGAGGACGGGAAGGAGGAGGAGGACCGGT
CGCGTCAGGGAAAGGGTTCTTCAAGTTCTATCCGTTCCTGAACGACGCCA
CCCACAACGAAATGGACGGCGAGGCTCGGTTTCGTTCTGTCCTGTTTCCG
GACCCCGAGGGACGGGCCTTGCTTGCGCGAGCGTCCGGTAGGCTGAGCTT
CCAGGCCGGAGAATTCTCGGAGACTTACGGCGGGGTGGGGGGGCCGTACG
AAGCCGCCTTCGACGCCGTGGTTACGAGCTTCTTCGTCGACACCGCTCCC
AATGTAGTACAGTACGTCGCGACCATCCGGCGAGCGTTGAGGCCCGGCGG
GGTGTGGATCAACTGCGGCCCGCTGCACTGGCACAACCACTCGGCTCTCG
CCTTGAGCCTCGACGAGATGCTGGTGCTGGTGGAGGGCTCCGGCTTCCGG
CTGGAGGAGGGGGTATTGTTCGGTGTACGTGCGGGGCAACGTTCCGGGGT
CGACGTGAGACGACTTGCACGTCCATCCACGTGTGGACAGCCGCGTGGCG
CTTTGCTTGCGTTTGTTTGCGAACGCAGCAGTGACCGCAGTTTGTACCAT
GTGTGA
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