mRNA_E_fasciculatus_S2_contig8552.16680.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8552.16680.1
Unique NamemRNA_E_fasciculatus_S2_contig8552.16680.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8552.16680.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG2_ECTSI)

HSP 1 Score: 1004 bits (2595), Expect = 0.000e+0
Identity = 602/706 (85.27%), Postives = 623/706 (88.24%), Query Frame = 1
Query:    1 EKIYERVGGTNLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSNKDVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWFSNKDTYEFHVLNRAPMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLLRSANPDHLDSSYMDRDAFKFRASSTECLLFAFSVTRFDIVMDDHLLDEIFARFDPERSGKMAVHRLVQYLLPSRDTCSHHLVPKTDEQGQATKTLLGKVFGMTGKRREMISLNGSGVDDPQGESLLERMAAGDRGDGEKIKAELARKAKAAAVAATAREMAAVEAARSGGPAVTPASLAAXXXRRRDNSPLVFNGDVLPTPGAT--AAQRAAAARPETSXXXXXXXXXXXXXXXXXE-----RGRSRQSSSGDVSLREREKRLDAREAALRRREDAMIATGNSDQVSPANVTN-----DPAAANGGKAAARPRPPSRERERPASVTALRRYMGNRXXXXXXXXXXXCSSSRPASPAGRERCTMSGHNNDGRPPNANRSRGAPGTSPRQREEADLIARCRALDAARRKAAATVAAGRQRGAPEDRQHRPEDGMNRAAPAVPPRHPGTATDFEKLSTRPVSASLPLREGVRQAGEISTSTGRGDGNLTTGGFRAEATGKATATKAADGAERIPTRPHSAASARRQAGSRSPSSAXXXXXXXXRNAGGGVHRPRQERW 2082
            EKIYERVGGT+LFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLS+KDVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWF NKDTYEFHVLNRAPMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLLRSANPDHLDSSYMDR+AFKF       ++F     RFDIVMDDHLLDEIFARFDPER+GKMAVHRLVQYLLPS+D CSHHLVPKTDEQGQATKTLLGKVFGMTGKRREMISLNGSGVDDPQGESLLERMAAGDRGDGEKIKAELARKAKAAAVAATAREMAAVEAARSGGPAVTPA    XXX  RDNSPLVFNGD++PTPGAT  AAQ AAAARPETS   XXXXXXXXXXXXXX      RG SRQSS+G+ SLREREK LDAREAALRRREDA++A   SDQVSPA+VT      D  AANGG+AAARPRPPSRERERPAS TALRRYMGN  XXXXXXXXXX    RPAS AGRER TMSGHNND RP NANRSRGAPG SPRQREEAD IARCRALDAARRKAAATVAAGRQR  P DRQHRPEDG+NRAA AVPPRHPGTA D +K   RPVSASLP REGVRQAGE  TSTGRGDGNLTTGG RAEA+GKAT T+AA GAERIP RP SAASARR+A SR PS  XXXXXXXX +AGGG  RPRQERW
Sbjct:  210 EKIYERVGGTSLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSSKDVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWFGNKDTYEFHVLNRAPMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLLRSANPDHLDSSYMDREAFKF-------VIFR----RFDIVMDDHLLDEIFARFDPERTGKMAVHRLVQYLLPSKDDCSHHLVPKTDEQGQATKTLLGKVFGMTGKRREMISLNGSGVDDPQGESLLERMAAGDRGDGEKIKAELARKAKAAAVAATAREMAAVEAARSGGPAVTPAXXXXXXXXXRDNSPLVFNGDLVPTPGATGTAAQHAAAARPETSSTNXXXXXXXXXXXXXXXXXXVGRGGSRQSSTGEFSLREREKHLDAREAALRRREDAIMAADKSDQVSPASVTTTNRAVDSGAANGGRAAARPRPPSRERERPASATALRRYMGN--XXXXXXXXXXXXXXRPASAAGRERGTMSGHNNDCRPTNANRSRGAPGASPRQREEADSIARCRALDAARRKAAATVAAGRQRSTPGDRQHRPEDGVNRAAQAVPPRHPGTANDADK---RPVSASLPSREGVRQAGETGTSTGRGDGNLTTGGPRAEASGKATGTEAAGGAERIPARPQSAASARRKADSRPPSGXXXXXXXXXXSAGGGARRPRQERW 899          
BLAST of mRNA_E_fasciculatus_S2_contig8552.16680.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE8_9STRA)

HSP 1 Score: 279 bits (714), Expect = 8.240e-78
Identity = 145/283 (51.24%), Postives = 196/283 (69.26%), Query Frame = 1
Query:    1 EKIYERVGGT-NLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSNKDVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWFSNKDTYEFHVLNRAPMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLLRSANPDHLDSSYMDRDAFKFRASSTECLLFAFSVTRFDIVMDDH---------------LLDEIFARFDPERSGKMAVHRLVQYLLPSRDTCSHHLVPKTDEQGQATKTLLGKVFGMTGKRREMISLNGSG 801
            EK++ER GGT NL++VQA Y LF DGRN G+T++ F+A +HDKFA++L++ +VD +FR++DP+ TG+LD++ FV+RL+   A PEPWF  +++Y+F    RAP K+D M A  W+RTKW+    E  L  K+ AKSNQDGGRFAFKSAVNLLRSANPDHLD +   R A K        ++F     +FDIVMDD                L+D++FA++   R+ K+++H+LV+ LLP     SHHLVPKT  Q  ATKTLL KVF MTGKRR++++LNG+G
Sbjct:  372 EKLHERSGGTGNLYQVQATYRLFLDGRNNGVTRERFKAHLHDKFAILLTDDEVDALFRRHDPENTGQLDLYKFVMRLVGVQAPPEPWFQGRESYDFRCGRRAPHKEDLMGAPEWKRTKWSLHHLEQELIKKMWAKSNQDGGRFAFKSAVNLLRSANPDHLDRTSFTRAAAKM-------VVFR----QFDIVMDDEWMXXXXXXXXXXXXXLVDQLFAKYADPRTDKISIHKLVRTLLPPAFDGSHHLVPKTSAQQAATKTLLHKVFEMTGKRRDIVNLNGAG 643          
BLAST of mRNA_E_fasciculatus_S2_contig8552.16680.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKC3_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 1.320e-5
Identity = 54/201 (26.87%), Postives = 90/201 (44.78%), Query Frame = 1
Query:  187 GTGKLDVHSFVVRLISPTAEPEP-WFSNKD-----TYEFHVLNRAPMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLLRSANPDHLDSSYMDRDAFKFRASSTECLLFAFSVTRFDIVMDDHLLDEIFARFD-PERSGKMAVHRLVQYLLPSRDTCSHHLVPKTDEQGQATKTLLGKVFGMTGK 768
            G G + +  F+ RL+     P   WF   D     T    V  R P+ +     E+ +   W   + E  LR+K+L ++   GG +  + A  L   A      ++ +DR      A   E         R ++V +  LL+ +F + + P  +G +AV  LV  LLP     ++ L P+  E+  A ++L+ +VFG+TGK
Sbjct:   39 GAGTVSLSVFLCRLVKVGDIPSGRWFEGADNAYVLTAGTRVTQR-PLLQRAAATEAMRAASWDLPRLEACLREKVLQRTAGAGGDYQLRDAFKLFHPARGPM--AARLDRRQL---AEVLE--------QRLEVVPEPALLEALFRKHERPAGAGAVAVRDLVHSLLPRDWDGTNFLTPRDREEHVAYRSLMKRVFGVTGK 225          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8552.16680.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized0.000e+085.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
EF-hand8.240e-7851.24domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.320e-526.87protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8552contigE_fasciculatus_S2_contig8552:1..6609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score1019.2
Seed ortholog evalue8.9e-295
Seed eggNOG ortholog2880.D8LRG2
Model size2082
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2A7PW@1,2RYER@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-18_004410.1
Cds size2082
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8552.16680.1prot_E_fasciculatus_S2_contig8552.16680.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8552 1..6609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842513.6249115-CDS-E_fasciculatus_S2_contig8552:0..421696842513.6249115-CDS-E_fasciculatus_S2_contig8552:0..42Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 1..42 +
1696842513.6380954-CDS-E_fasciculatus_S2_contig8552:1254..13621696842513.6380954-CDS-E_fasciculatus_S2_contig8552:1254..1362Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 1255..1362 +
1696842513.650222-CDS-E_fasciculatus_S2_contig8552:1813..19781696842513.650222-CDS-E_fasciculatus_S2_contig8552:1813..1978Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 1814..1978 +
1696842513.6610181-CDS-E_fasciculatus_S2_contig8552:2900..29961696842513.6610181-CDS-E_fasciculatus_S2_contig8552:2900..2996Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 2901..2996 +
1696842513.6756656-CDS-E_fasciculatus_S2_contig8552:3312..34141696842513.6756656-CDS-E_fasciculatus_S2_contig8552:3312..3414Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 3313..3414 +
1696842513.69351-CDS-E_fasciculatus_S2_contig8552:4147..42671696842513.69351-CDS-E_fasciculatus_S2_contig8552:4147..4267Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 4148..4267 +
1696842513.7046447-CDS-E_fasciculatus_S2_contig8552:4470..47041696842513.7046447-CDS-E_fasciculatus_S2_contig8552:4470..4704Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 4471..4704 +
1696842513.7147255-CDS-E_fasciculatus_S2_contig8552:5394..66091696842513.7147255-CDS-E_fasciculatus_S2_contig8552:5394..6609Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8552 5395..6609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8552.16680.1

>prot_E_fasciculatus_S2_contig8552.16680.1 ID=prot_E_fasciculatus_S2_contig8552.16680.1|Name=mRNA_E_fasciculatus_S2_contig8552.16680.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=694bp
EKIYERVGGTNLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSNK
DVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWFSNKDTYEFHVLNR
APMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNL
LRSANPDHLDSSYMDRDAFKFRASSTECLLFAFSVTRFDIVMDDHLLDEI
FARFDPERSGKMAVHRLVQYLLPSRDTCSHHLVPKTDEQGQATKTLLGKV
FGMTGKRREMISLNGSGVDDPQGESLLERMAAGDRGDGEKIKAELARKAK
AAAVAATAREMAAVEAARSGGPAVTPASLAAAAARRRDNSPLVFNGDVLP
TPGATAAQRAAAARPETSSTNSGGSSEGAGVGGGGERGRSRQSSSGDVSL
REREKRLDAREAALRRREDAMIATGNSDQVSPANVTNDPAAANGGKAAAR
PRPPSRERERPASVTALRRYMGNRRQQHQQQQQRRCSSSRPASPAGRERC
TMSGHNNDGRPPNANRSRGAPGTSPRQREEADLIARCRALDAARRKAAAT
VAAGRQRGAPEDRQHRPEDGMNRAAPAVPPRHPGTATDFEKLSTRPVSAS
LPLREGVRQAGEISTSTGRGDGNLTTGGFRAEATGKATATKAADGAERIP
TRPHSAASARRQAGSRSPSSARPQSASSSRNAGGGVHRPRQERW
back to top

mRNA from alignment at E_fasciculatus_S2_contig8552:1..6609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8552.16680.1 ID=mRNA_E_fasciculatus_S2_contig8552.16680.1|Name=mRNA_E_fasciculatus_S2_contig8552.16680.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6609bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8552:1..6609+ (Ectocarpus fasciculatus EfasUO2)
GAGAAGATCTACGAGAGGGTTGGTGGCACGAATCTTTTCGAGGTGAGGAC TGGTCACTGTGATTGTACATACTTACGACGTACAGTAGCAGGAAAGAGCG CACGCTTCAGGTCTCAAATAGTTCTGGGAAGGCAGTAGTTTTGGTCGGCT TAGATCTATAGATTCAGAAGTACCTCAGCCTCCTAAATCAGGTCTCGAGA CAGTTTTGCATACTCTTCGCAATATTTATTAACGACGCTGCCCCCACTGT CGTGTTCCTTGGAAGGTTCTGCTTTAGAAGTGCTCTGTATCTTGTCGGAA AGCTATCTTAGACACCTTGAAATATCACCCGTACTCGCTCGCACCAGAAT AAATGGAATCGCATACACATATGAACTCTCGAACCAGCCAACTGTATCCA CCACCCATGTCCTGAGTTAGGAATGTTCTTCCGGGGCCCCGGAGTACTTC TCCTTGTCTATGCCTGGAACGGCGGGGCAGTTTTTTCCCCGTTTCCATGT CGTTTGTCTTGCCCCTTGTATGCCAGTCAGTTCTCAGGAGGTTGCCCCAC GGGCGAAAGTCGACCCCCCCGCTTCAAATATATTCATGAACGCACGTCGA AGTTCGTGCTCGGAGAGATCGATCCATGGTCATCCTCATGGTTGACCCGC CCGAAACTCATTCCTACCGCGCGTGTCCCGTAGGGATGGATGTTTTAAGT CCCTATCAGGTTGGCAAATGACGGTGTGTCCTGTCTCCTCACGGTCGACA AGAAAACAAAACGGGGTTACTCCTCAAAGCGAGATGGACGTAAGACCCCT CTTTCATTCACAGGAACGTTAACGTGGGTCACAATCTGTTCCTGTGAATG AAAGAGAGAACATACGTCCATCTCTCTCCGAGGGAGAATTCCGCTTTGCC TTCTAGTCCCTCGTGAGGGGACAGAGCACGCTGTGCTCTGCCGAGATGTG AGGGACTCATGTACCCATCCTCACGAGACACAAACACGGTAGGAACGAGT TTCGGGCGGCTCAACCATGATGATGATCATGGATCGATGTCTCCGAGCAC GAAGCTCGACGGGCTTGCATGAGCAAATAAATGTGAAAAAAGGGTTGGAT TGAGTGCACCCAGCACCCACTTCGGCAACGTTAAATAGAGCCAATTTTGA CTACAGTCTCCTTGGACTGAGCAATACTGTTCTCGTGTGTGCCACTCGCC AATACCATACCAATGCCATGCCATTGCTGCTGCCGCCATTACCATTACCC GCAGGTCCAGGCGGCGTATACCCTGTTTCAGGACGGGCGCAACACCGGTC TCACCAAGAAGGGTTTTCAGGCGCAGATGCACGACAAGTTCGCCGTCGTC CTTAGCAATAAGGTAGGTCAAGCACATGCTCAAGTACGGGTATCGTTTGT CACCCTGTGTAAGTATCTTGGATTCCCACATCTGTTTGTGCCGATCCATT TGAGTGGAACATGTCAGATGACTTGTACCACTGCTGTATGTAGTACCACC AACCACGACCACCCTACCGCTACTACTACAGTTACTATTATACGTTACTA CGCAGCCCATTCGTCGTCGGATGAGGATGCTGTCTTGTTTGCTACCGTGA TGGTCGAACGACACTCTAGAGGAGAGGTGATTGCAATGAGCACCATCATC TCGGCCCGGTACTACACCCCCTGCGGGGTCTTACAACACCCCAACATCCG GTGAAAGGAAAGTGTGGGGTTTCGGAGAGAAATACACCATGAAACATCCT GGTACAGCCATCTCTCCTGACCTGTCACATGTAACTGCCGCCGCTGCTCT TGGTGTGTTCCAGGATGTCGACGACGTGTTCCGGAAGTACGACCCCAAGG GCACGGGCAAGTTAGACGTGCACAGCTTCGTGGTGAGGCTCATCAGCCCT ACCGCGGAGCCCGAGCCGTGGTTCAGCAACAAGGATACCTACGAGTTCCA CGTCCTCAACCGCGCTCCCATGAAGAAGGTGATGCGTATGTACAACTCAT TTTGTTTTCGGCAGAGAAAACACCACTAATAGCTAAGCTGTTGTACAAAT GAACTGTGGCAAGCTTCAGATGCGTTCGGCCTTGCAGTCCTCTCTGGTAT ACGCTTCTTTTTGTTGAAGTAAAAGTTGTTTTTCAACCGCAATTCGTCGA GAAGAGTGAACACATGTCGTATAGTATAGTATAGTAGATGGGGACGTCTA CAGGCTTCGCGACCTACCATCAAGCTCCGGTGGAGGATGCGAGCACTCGA GCATTCAGAAGCGGGGGGGGGAGCACGTACTATGAATATCTTTTCACTCG GATCCGGTCGTGAAACAGACGGGGGTACTCATAGCCGCCCATGCCGTAGC CGATAGACTATTGATCTCGCATTCCTACAAAGCCGGGACGGAGCATGCCG GGTGTTCACCGGAGCAGGCTAGCACATCACCATGGGGGGAGGGACGAAAG AACTCGAGCGCCACCAGCGAAGACAAAAGCCATACTTCCATATCTGCGGG CTGTTTTGCTCCTTGCCGGCGCTGTCTCCTCGTCCTTCGACCCCACGACA CGTCAATCAGGAACGCCTTTGTCAGCCTTCACTGTATCTCGCTAGGCCAG AAGAGGTTTTGTTTCTTGCGACGCCTGCAAACACCCAGTATTGGCTCGAT TGGATATTGTCGGTGGGCATACGCACGTCCCTCTAGTATGCCACCCCTTC ACTTGTTTATACTGCAACACGAACAGTCTGGCGGAGGATCTGGCCTGAGC AATGAGCCTTCTTCGTGCTTACCGGTATGAAAGCCCTAATGACGGAAGTA TGGAGGCCCCGGTAGCCCGGCGGGTTTCGCCGACCATTGGGTGGAATTGC CCGATATGGTCATAGATTTTGAAAGCGGTCTCCTAATTTGATGTCCACAG GACCCTATGAAGGCCGAGAGCTGGCAAAGGACCAAGTGGACGTTCCGGCA ATTCGAGACCACCCTGAGAGACAAGCTCTTGGCGAAGAGCAACCAGGTAT GCGACCAATCGAGATCCAAAAGCCAACAAGCTAGATTTCCTTTTCATTTG GTGCGCGGAAACGACAAACACCAACTCGACGTTCCCTTTTTCTTGGCAGG CAAGGGGGACGAAGCCCGGTGTGCAACTTGAGACGAATGTCCCACAAGCT GATACTTTCGGGTTGACAAACAACAGTCAGCAAGGTGCCAACAACATTCT TCGCTGAAGACGGGAAGTTTCATTCAGTCTCGTGTGGACGTCAGCAGTAT CTAAAAAGAAACTGAAATGGCATGCATTGAAGTGCTTTCCCCTCCCTTAT TCCCTTGCCCAGGACGGGGGGAGATTCGCTTTCAAGTCCGCCGTGAATCT GCTGCGATCGGCTAACCCGGACCATCTGGACTCGTCCTACATGGACAGGG ATGCCTTTAAGTTCGTCATCTTTCGAAGGCAAGAGCGCGAATCTTTCATC CAAGAAAATCGCGTTTCCCTCGTTTGTACCCCCCCTCCACTCCCCCAACC CCAAAGGAGCCTACAGGTAGATGTATCACGGAAAATTGCATCATCATCAT CATCCTGAAGAACCCCGTGAAACACCACACAACGAATGCCTAAGGAATTC GTACCTCTCAAGATGTTGCTGGGGTGGATCTGGTTGGTTGCACAAAGAAT GTAACTTATTCGATTTAGTCTTGGTATCAGTTTCACACAACACTGTGGAG GAATGTTGTGGTCGCATACACCCGCACATTATGGACCAGGCTTCCTGTTC GTCTGTCGGCGTCTCGAAGTCGGCGGTTTTCTCGCCCATAAGGGTGGTGC TGGGAGTCTTTGGTCTTTGGTAGACTTGTCGCCTGTAGAGGAGTAAAAGT GTTACCGTACATGAATGCACTCAGGCGAAAGCTAAGTCTACCTCCGATTC TCCGTCGAGGGCCAGCTTGTTTGTTCATGGCCAATCACCGTCTACCTTAG GCTATCATGTTAGACCAGATTCGGCCCAGAACTGTCGTGATTGACTCCTT TTTTCTTTTTCCGCCTCCTTCTCAGCCGCATTCGTTCAAAGAACCAGTTT TCTGTTTGAACCCTGGGGTACGTGTACTATGGTCGTGTCATGAAAGTAGG TGGGAGAGCAGCTCAACAAAACGGCACAAAAATCCTCACAGTGACAGCGT GCATCGTCGACCGAATGTCTGTTATTTGCCTTCTCTGTGACAAGGTTCGA CATCGTGATGGACGATCACCTGCTAGATGAGATCTTCGCGCGGTTCGACC CAGAGCGAAGCGGCAAGGTCAGACGTCGTTTTTTGCGAACAACATCAACA CTAACTGCCGGTAGCTTCCAGGACATAGGGTCAATTGATAGGATATCTCA ATGGTACCCCCTAGTCTTGACTTCATGGTGTTACCTACGATACCCTCACC TTACTCCCCTTCCCTGATCAACCGACTACTCGTGGCCTGCGGACAACATC AACGACGGCGACGGCGATAGATGGCGGTCCACCGACTGGTTCAATACCTG CTGCCGTCGAGGGACACCTGCTCGCACCATCTCGTGCCCAAGACGGACGA GCAGGGGCAGGCCACCAAGACTCTCCTCGGCAAGGTCTTCGGGATGACGG GAAAGCGAAGGGAGATGATTAGCCTGAACGGGTCGGGAGTGGATGATCCG CAGGGCGAATCGTTGCTCGAGAGGATGGCCGCAGGCGACAGGGGCGACGG AGAGGTGGGCTCTTAGTCCTTTCTCGTAGGTCGTCACCGTTTCGTCTGTG AAGAAGCGAATATTCCGGCTTTACATGCGCCCAGATCGGCGCTGCTGTCG ATATCTTCAAGGTGTCTATAGGTTCATCTCGCGATTTCGCAGTATCGGTT TTAATTGTGCATCTAGGCCGCTCCCACCCGAAGTGTTGGTCGATGCTGTA TATGCCCTGTTCCTCCGTGGTCTATTGGGTTCATCAACCGCGTACAACTT GCCGGTAGAGGTGAGCAAGTTGTGAGCCTTTAGTCGAATTGCCTTGCTAA AACGCGACCGACGAAGTATCACACATGTGGTCGGGTGTACGACTCTTACT TGAAAAGACTTTGTTAACCGTTTTGTAGAAAACGGGCTGCCACAATATAT TGCCGTTCCAAGCATCCCTCCGAGAATCCTTACGGCAGCATGGTTAGTGC TCCTAACGGCGGGACGACGGGGGCAACCCATGTCGTGTGCAAGTCACAGG CAGTACAGACTCAACAATGACACCCGGCAATGCGAGCATCATCTCTGCTT TTCCATTCGCAAGAATCTCTCAGATGGCCGAAAAAGGGAGGTAGATTTAC CCTCCGAGTTTTACAGTGCCGAAGTCGCGCCAGCGTCAGGCGTATCGCCC CTGCCCCCTCACGTTTTCTTTTGTTTTTGGGCAACGGAACACAGAAAATC AAGGCCGAGCTGGCGCGAAAAGCCAAGGCGGCTGCAGTCGCGGCCACTGC TAGGGAGATGGCCGCCGTCGAGGCCGCCCGCAGCGGCGGTCCGGCAGTCA CACCCGCGTCGCTTGCGGCGGCCGCCGCGAGGCGGCGCGACAACTCCCCG CTAGTGTTTAACGGTGACGTTCTACCTACTCCCGGTGCGACGGCGGCGCA GCGTGCGGCAGCCGCTCGGCCCGAAACGTCCTCTACGAATAGCGGCGGAA GTAGTGAAGGCGCTGGGGTTGGCGGCGGCGGGGAGCGGGGAAGATCACGG CAGAGCTCCTCGGGCGACGTATCTCTTCGCGAAAGAGAAAAACGCTTGGA CGCACGCGAGGCCGCCCTCCGAAGACGGGAGGACGCAATGATCGCGACTG GCAACAGTGACCAGGTTTCGCCGGCAAACGTTACCAACGACCCGGCAGCA GCAAATGGCGGGAAAGCGGCAGCGAGGCCGCGGCCACCTAGTCGAGAGAG AGAACGACCCGCATCGGTGACAGCCCTGCGGCGGTACATGGGGAATCGCC GGCAGCAACATCAGCAGCAGCAGCAGCGACGTTGCTCAAGTAGCAGGCCG GCTTCCCCGGCTGGCAGGGAGAGATGCACCATGAGCGGCCACAATAATGA TGGTCGGCCTCCTAACGCGAACCGTAGTCGGGGTGCGCCGGGAACAAGTC CACGACAGAGGGAGGAGGCCGACTTGATAGCGAGGTGCCGGGCCTTAGAC GCGGCCCGGCGTAAAGCGGCGGCAACGGTGGCGGCAGGCCGACAGCGAGG TGCGCCCGAGGACAGGCAACACCGACCGGAAGATGGAATGAACCGAGCGG CGCCAGCGGTCCCTCCTCGCCACCCAGGGACGGCCACAGACTTTGAAAAA CTTTCCACCCGTCCTGTCTCTGCTTCGTTGCCCTTGAGGGAGGGCGTTCG GCAAGCAGGGGAAATCAGTACAAGCACCGGTCGGGGTGATGGCAACCTTA CCACGGGCGGCTTTCGAGCGGAAGCTACCGGCAAGGCGACCGCGACGAAA GCGGCCGACGGGGCCGAAAGAATCCCCACTCGCCCTCACTCAGCGGCGTC TGCGCGCCGGCAAGCGGGCTCGCGGTCTCCTAGCAGCGCTAGGCCTCAAT CAGCATCTTCTTCGCGGAACGCGGGAGGGGGAGTCCACAGACCGCGACAA GAGCGGTGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8552:1..6609+

>mRNA_E_fasciculatus_S2_contig8552.16680.1 ID=mRNA_E_fasciculatus_S2_contig8552.16680.1|Name=mRNA_E_fasciculatus_S2_contig8552.16680.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2082bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8552:1..6609+ (Ectocarpus fasciculatus EfasUO2)
GAGAAGATCTACGAGAGGGTTGGTGGCACGAATCTTTTCGAGGTCCAGGC
GGCGTATACCCTGTTTCAGGACGGGCGCAACACCGGTCTCACCAAGAAGG
GTTTTCAGGCGCAGATGCACGACAAGTTCGCCGTCGTCCTTAGCAATAAG
GATGTCGACGACGTGTTCCGGAAGTACGACCCCAAGGGCACGGGCAAGTT
AGACGTGCACAGCTTCGTGGTGAGGCTCATCAGCCCTACCGCGGAGCCCG
AGCCGTGGTTCAGCAACAAGGATACCTACGAGTTCCACGTCCTCAACCGC
GCTCCCATGAAGAAGGACCCTATGAAGGCCGAGAGCTGGCAAAGGACCAA
GTGGACGTTCCGGCAATTCGAGACCACCCTGAGAGACAAGCTCTTGGCGA
AGAGCAACCAGGACGGGGGGAGATTCGCTTTCAAGTCCGCCGTGAATCTG
CTGCGATCGGCTAACCCGGACCATCTGGACTCGTCCTACATGGACAGGGA
TGCCTTTAAGTTCCGTGCATCGTCGACCGAATGTCTGTTATTTGCCTTCT
CTGTGACAAGGTTCGACATCGTGATGGACGATCACCTGCTAGATGAGATC
TTCGCGCGGTTCGACCCAGAGCGAAGCGGCAAGATGGCGGTCCACCGACT
GGTTCAATACCTGCTGCCGTCGAGGGACACCTGCTCGCACCATCTCGTGC
CCAAGACGGACGAGCAGGGGCAGGCCACCAAGACTCTCCTCGGCAAGGTC
TTCGGGATGACGGGAAAGCGAAGGGAGATGATTAGCCTGAACGGGTCGGG
AGTGGATGATCCGCAGGGCGAATCGTTGCTCGAGAGGATGGCCGCAGGCG
ACAGGGGCGACGGAGAGAAAATCAAGGCCGAGCTGGCGCGAAAAGCCAAG
GCGGCTGCAGTCGCGGCCACTGCTAGGGAGATGGCCGCCGTCGAGGCCGC
CCGCAGCGGCGGTCCGGCAGTCACACCCGCGTCGCTTGCGGCGGCCGCCG
CGAGGCGGCGCGACAACTCCCCGCTAGTGTTTAACGGTGACGTTCTACCT
ACTCCCGGTGCGACGGCGGCGCAGCGTGCGGCAGCCGCTCGGCCCGAAAC
GTCCTCTACGAATAGCGGCGGAAGTAGTGAAGGCGCTGGGGTTGGCGGCG
GCGGGGAGCGGGGAAGATCACGGCAGAGCTCCTCGGGCGACGTATCTCTT
CGCGAAAGAGAAAAACGCTTGGACGCACGCGAGGCCGCCCTCCGAAGACG
GGAGGACGCAATGATCGCGACTGGCAACAGTGACCAGGTTTCGCCGGCAA
ACGTTACCAACGACCCGGCAGCAGCAAATGGCGGGAAAGCGGCAGCGAGG
CCGCGGCCACCTAGTCGAGAGAGAGAACGACCCGCATCGGTGACAGCCCT
GCGGCGGTACATGGGGAATCGCCGGCAGCAACATCAGCAGCAGCAGCAGC
GACGTTGCTCAAGTAGCAGGCCGGCTTCCCCGGCTGGCAGGGAGAGATGC
ACCATGAGCGGCCACAATAATGATGGTCGGCCTCCTAACGCGAACCGTAG
TCGGGGTGCGCCGGGAACAAGTCCACGACAGAGGGAGGAGGCCGACTTGA
TAGCGAGGTGCCGGGCCTTAGACGCGGCCCGGCGTAAAGCGGCGGCAACG
GTGGCGGCAGGCCGACAGCGAGGTGCGCCCGAGGACAGGCAACACCGACC
GGAAGATGGAATGAACCGAGCGGCGCCAGCGGTCCCTCCTCGCCACCCAG
GGACGGCCACAGACTTTGAAAAACTTTCCACCCGTCCTGTCTCTGCTTCG
TTGCCCTTGAGGGAGGGCGTTCGGCAAGCAGGGGAAATCAGTACAAGCAC
CGGTCGGGGTGATGGCAACCTTACCACGGGCGGCTTTCGAGCGGAAGCTA
CCGGCAAGGCGACCGCGACGAAAGCGGCCGACGGGGCCGAAAGAATCCCC
ACTCGCCCTCACTCAGCGGCGTCTGCGCGCCGGCAAGCGGGCTCGCGGTC
TCCTAGCAGCGCTAGGCCTCAATCAGCATCTTCTTCGCGGAACGCGGGAG
GGGGAGTCCACAGACCGCGACAAGAGCGGTGG
back to top