mRNA_E_fasciculatus_S2_contig8539.16664.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8539.16664.1
Unique NamemRNA_E_fasciculatus_S2_contig8539.16664.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8539.16664.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.730e-45
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   73 LRFSSYSLLEGGDTAAGSLGLPTGALFAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 300
            LRFSSYSLLEGGDTAAGSLGLPTGALFAPF+ELQP P RIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN
Sbjct:   10 LRFSSYSLLEGGDTAAGSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 85
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BLAST of mRNA_E_fasciculatus_S2_contig8539.16664.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 8.430e-9
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 3 
Query:    3 RVWVGLGNCEAT-RRDDVATSSASTEILVLLPPG 101
            RV+VGLGNCEAT RRDDVATSSAS E+LVLLPPG
Sbjct:   26 RVYVGLGNCEATTRRDDVATSSASAEVLVLLPPG 59
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8539.16664.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Protein1.730e-4596.05transport protein SEC23 n=1 Tax=Ectocarpus sp. CCA... [more]
Protein8.430e-988.24transport protein SEC23 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8539contigE_fasciculatus_S2_contig8539:186..1761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842512.0842583-CDS-E_fasciculatus_S2_contig8539:185..3831696842512.0842583-CDS-E_fasciculatus_S2_contig8539:185..383Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8539 186..383 -
1696842512.0982022-CDS-E_fasciculatus_S2_contig8539:1659..17611696842512.0982022-CDS-E_fasciculatus_S2_contig8539:1659..1761Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8539 1660..1761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8539.16664.1prot_E_fasciculatus_S2_contig8539.16664.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8539 186..1761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8539.16664.1

>prot_E_fasciculatus_S2_contig8539.16664.1 ID=prot_E_fasciculatus_S2_contig8539.16664.1|Name=mRNA_E_fasciculatus_S2_contig8539.16664.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
RGCGWVWVTARRREEMTSPPPPPPLRFSSYSLLEGGDTAAGSLGLPTGAL
FAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN
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mRNA from alignment at E_fasciculatus_S2_contig8539:186..1761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8539.16664.1 ID=mRNA_E_fasciculatus_S2_contig8539.16664.1|Name=mRNA_E_fasciculatus_S2_contig8539.16664.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8539:186..1761- (Ectocarpus fasciculatus EfasUO2)
AGAGGGTGTGGGTGGGTTTGGGTAACTGCGAGGCGACGAGAAGAGATGAC
GTCGCCACCTCCTCCGCCTCCACTGAGATTCTCGTCCTACTCCCTCCTGG
AGGTGAGCTATGTATCACAGCATTTCGTTGTCGTGATGTTTGGTGGTCAT
GTCCTCCCGTCCGTTCCGCGATCGTCGCGCTCTCTTCTGCTGAAGAAGTG
TTGTTCTGTCTCCTTGTGTGGGTGGGGACAGAGCTCTCACCAGCAGGCGT
GCCTGCTGGAGAGGTACCGGACGAACTTTTGTCCTCGAACTGTGTTGCCT
TCTGTAGCGAGTCCCCGCCGCCTTCTGGTTGCCAGTTTGCCGTTTTGCTC
GCTACTGCTCTGGACAATCAGTCCCAAGACTTTGCGGAGATTTGCAAGGT
TCACACACACACAACGACACACACGGGACGCCCTCAGGAAACAGGCCAGA
GTGCTTGCTACCCGCTTTTACCTTTGGTTTCGGAACTTGTCCAGCATTGA
CTGACTACAAAGGCTGGCTGCTGCTGGTTTAGACGGTGGTGTATCGCATT
TTCAGTGATAGATGTGGCCGTCTAAATAGACGCAACACCGAACACAAGCC
GCAAGGTCGGCGCCCTGGGCACCTGATTCCGCCGCACGACAGCAGCGTAC
ATGTTGTACAAGCGGGGCTCGAATACAGCAGTGTTTCCGCGGATATTCTA
TGCGTGCAGCAGGTAGCCTGGTAGATGTGTTTCCATCTGCGTTCTGTGCG
TGTTTCCTGTCCAGCCATGAGCATACTCGCGCGCTGGGATCGACGTTTTG
GTGTTTATGGAGCGAGATAACTACCCCGCCCTCACCTACAATGTACAGCA
GTCCAGAGCCAAGTCCATCAAGCCTTCTCCACACAACCCCAATCTATGGC
ATGCCCTCTCTCTCCCCTCCCCCAAAACCTCCACCAACATTCGCCCCACC
TTGCTTGCCAAGGGCCCTCGCTGCCGACGTGCAAGCAAGTGCGTTCTTTA
CACCAACCAAGGGAGGACGCTTTGTACGTCCCAGGAGCCACCATGCCACA
AGTAAAATGAACGGAATAGCAGGCATCACTACCCGTCTCATCCATCGCTC
CCCCTCCCAGAAGCTACTTGTAACTGGAGTGTGAGGTGTAAGAAGTGAGC
TGAAACGGCGGGAAGTGATATTCGATAGAATGGATAAGATATGGGCATAG
CGTTTGGGCCACCTTTGGCGAAGAAGGAATGAACGATTGGCCATCATCGG
TGATGGGTCTTGCGGGGGGAAGCACTCCGTCCTCTCGTGGACAATGGTCT
AACCGCTCAGGCATGCGCTACGCCCCCCCCCCCCCCACCTGCCCCTCCCT
CGAAAAATCACGCATACACTCGCGAAAGGGAGGAGACACGGCCGCGGGGA
GCCTGGGCCTGCCCACGGGCGCGCTGTTCGCCCCCTTCTCCGAGCTGCAG
CCGCCGCCCCCCCGCATCCCGAGGCAGCCGGTGCTTTGCACCTTCTGCTC
GGCCTACCCTAGCCCCTTCTGTCGGGTGGACCCCGGGACCGGTCGGTGGC
GATGCTGCTTCTGCGAGAAGGAGAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8539:186..1761-

>mRNA_E_fasciculatus_S2_contig8539.16664.1 ID=mRNA_E_fasciculatus_S2_contig8539.16664.1|Name=mRNA_E_fasciculatus_S2_contig8539.16664.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8539:186..1761- (Ectocarpus fasciculatus EfasUO2)
AGAGGGTGTGGGTGGGTTTGGGTAACTGCGAGGCGACGAGAAGAGATGAC
GTCGCCACCTCCTCCGCCTCCACTGAGATTCTCGTCCTACTCCCTCCTGG
AGGGAGGAGACACGGCCGCGGGGAGCCTGGGCCTGCCCACGGGCGCGCTG
TTCGCCCCCTTCTCCGAGCTGCAGCCGCCGCCCCCCCGCATCCCGAGGCA
GCCGGTGCTTTGCACCTTCTGCTCGGCCTACCCTAGCCCCTTCTGTCGGG
TGGACCCCGGGACCGGTCGGTGGCGATGCTGCTTCTGCGAGAAGGAGAAC
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