mRNA_E_fasciculatus_S2_contig8536.16663.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8536.16663.1
Unique NamemRNA_E_fasciculatus_S2_contig8536.16663.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV7_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.480e-53
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 DPVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR 264
            DPVIEQFVPTRAVLWRKW+GTMLEDTWEATVLNMGVALVVCLAYQRLQ+SCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR
Sbjct:   25 DPVIEQFVPTRAVLWRKWKGTMLEDTWEATVLNMGVALVVCLAYQRLQLSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR 112          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU07_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 6.110e-51
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 DPVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR 264
            DPVIEQFVPTRAVLWRKW+GTMLEDTWEAT+LNM VALVVCLAYQRLQVS PRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR
Sbjct:   26 DPVIEQFVPTRAVLWRKWKGTMLEDTWEATMLNMVVALVVCLAYQRLQVSYPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR 113          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TF44_THAOC)

HSP 1 Score: 79.0 bits (193), Expect = 3.620e-15
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 DPVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR 267
             PV+ QF P R  +WR+WRGT+  +TW++ + NM ++ +V   Y     + P+L + L    I+W   +++TTF LTFF++QSY +WR+
Sbjct:  209 QPVMMQFNPKRGWIWRQWRGTVFSETWKSGLRNMALSTLVVFLYG----AQPKLKDLLQGFSILWGQLLSVTTFTLTFFLNQSYGLWRK 293          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Hypothetical (protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XP54_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.650e-15
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    4 PVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR 267
            P++ QF P+   +WR+W GT+  +TW   + NM  A ++ L Y+    + P+  E L   +I+W   +++TTF LTFF++QSYA+WR+
Sbjct:  167 PIMMQFDPSSGYIWRRWSGTVFSETWRTCLGNMLYATIIALFYK----ANPQFRESLTGFNILWGQLLSVTTFTLTFFLNQSYALWRK 250          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD25_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 6.810e-15
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 DPVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR 267
            +PV+ QF P R  +WR+WRGT+  +TW++ ++NM +A  V   Y       P L ++L    I+W   +++TTF LTFF++QSY +WR+
Sbjct:  372 NPVMMQFNPKRGWIWRQWRGTVFSETWKSGLMNMVLATCVVGLYG----VYPNLKDKLQGFSILWGQLLSVTTFTLTFFLNQSYGLWRK 456          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WCN8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.670e-14
Identity = 35/88 (39.77%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    4 PVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR 267
            P++ QF P+   +WR+W+GT+  +TW + V N+  A V+ + Y+    + P   E L   +I+W   +++TTF LTFFV+QSYA+WR+
Sbjct:  235 PIMMQFDPSSGWIWRRWKGTVFCETWTSCVRNILYATVIAIFYK----ARPSFWESLTGFNILWGQLLSITTFTLTFFVNQSYALWRK 318          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5LRR5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-13
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 PVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR 267
            P++ QF P+   +WR+W+GT+  +TW + V NM ++++       L    P   +Q+   +++W   + +TTF LTFF++QSYA+WR+
Sbjct:  164 PIMMQFDPSSGYIWRRWQGTVFSETWSSCVRNMVISVITISIVNAL----PGFRKQIDGFNVLWSQLLGVTTFTLTFFLNQSYALWRK 247          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E8_FISSO)

HSP 1 Score: 73.2 bits (178), Expect = 3.860e-13
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    4 PVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR 267
            P++ QF P+   +W++W+GT+  +TW++ V  M  A   CL +   +     + E L    I+W   +++TTF LTFFV+QSYA+WR+
Sbjct:   34 PIMMQFDPSSGWIWKRWKGTIFSETWDSCVAKMVYA---CLVFVLCRTYPSTVKETLSGFHILWGQLLSVTTFTLTFFVNQSYALWRK 118          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDY6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.180e-13
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 DPVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVV--CLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR 264
            +PV+ QF P+   +WR+W+GT+  +TW   V N+ +A V+   L+Y R+        + L   +I+W   +++TTF LTFF++QSY +WR
Sbjct:  166 NPVMMQFDPSSGWIWRRWKGTIFSETWRRAVTNICIATVIWTMLSYNRVT-----FLQNLSGFNILWGQLLSVTTFTLTFFLNQSYTLWR 250          
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAA7_FISSO)

HSP 1 Score: 72.8 bits (177), Expect = 5.270e-13
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    4 PVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR 267
            P++ QF P+   +W++W+GT+  +TW++ V  M  A   CL +   +     + E L    I+W   +++TTF LTFFV+QSYA+WR+
Sbjct:   34 PIMMQFDPSSGWIWKRWKGTIFSETWDSCVAKMVYA---CLIFVLCRTYPSTVKETLSGFHILWGQLLSVTTFTLTFFVNQSYALWRK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8536.16663.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.480e-5397.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.110e-5195.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.620e-1539.33protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Hypothetical6.650e-1538.64protein n=2 Tax=Attheya septentrionalis TaxID=4202... [more]
Uncharacterized6.810e-1540.45protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
Hypothetical1.670e-1439.77protein n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
Hypothetical1.100e-1335.23protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
Uncharacterized3.860e-1337.50protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Hypothetical5.180e-1337.78protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Uncharacterized5.270e-1337.50protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8536contigE_fasciculatus_S2_contig8536:5024..6063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score180.3
Seed ortholog evalue4.1e-43
Seed eggNOG ortholog2880.D8LQV7
Model size270
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Bestrophin, RFP-TM, chloride channel
EggNOG OGs2BKDA@1,2S1IE@2759
Cds size270
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842512.046909-CDS-E_fasciculatus_S2_contig8536:5023..52111696842512.046909-CDS-E_fasciculatus_S2_contig8536:5023..5211Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8536 5024..5211 +
1696842512.0588272-CDS-E_fasciculatus_S2_contig8536:5981..60631696842512.0588272-CDS-E_fasciculatus_S2_contig8536:5981..6063Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8536 5982..6063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8536.16663.1prot_E_fasciculatus_S2_contig8536.16663.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8536 5024..6063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8536.16663.1

>prot_E_fasciculatus_S2_contig8536.16663.1 ID=prot_E_fasciculatus_S2_contig8536.16663.1|Name=mRNA_E_fasciculatus_S2_contig8536.16663.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=90bp
DPVIEQFVPTRAVLWRKWRGTMLEDTWEATVLNMGVALVVCLAYQRLQVS
CPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWRR*
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mRNA from alignment at E_fasciculatus_S2_contig8536:5024..6063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8536.16663.1 ID=mRNA_E_fasciculatus_S2_contig8536.16663.1|Name=mRNA_E_fasciculatus_S2_contig8536.16663.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1040bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8536:5024..6063+ (Ectocarpus fasciculatus EfasUO2)
GATCCTGTCATCGAACAATTTGTGCCTACCCGCGCGGTTCTTTGGAGAAA GTGGAGAGGGACCATGCTGGAAGACACCTGGGAAGCGACCGTGCTTAACA TGGGCGTTGCGTTGGTCGTGTGCTTGGCGTATCAAAGGCTGCAAGTTTCC TGCCCTCGCCTCTCCGAGCAGCTGTTCAAGATTGACATGTAAGATTGACG TGGGAATGTCCGCTTAACGTAGTGACATCATTTTTGCAGCTTCTTCTTCA CGCGTGATGACACAGCATTCGTACCTAGATCCCGCCACCGTGCTTCCTGA GCAATAAAGTGTTCCAGGTTGATTACTTGATGCACTCTGACCCACAGCCC CCCCCCCGCCTTGGTATAACGTTCCCAGCGACGTTGTGACGATGTGCGTA AGCAGAAACAGTTCTGTCAAGGTGCTATAGCCCAAACGTCGTCATGGGCG GGCGCAGATACTGCTTATGACCTTGATGTTCTATATAGTTTCCATTAGTC TTTCCTAGAGCCCGAAGAAGGAACGTTTCTGGGTTTCCTTGCCTGGCATA CCCAAAGTACAACAAACACTGCAAAACTACCGCCCCAATAACATGGAACG GGAAAACCCAAAATAGTGTTTTGGGCGTGCCCTACGAAAATAACTGTACG TGCCTTGGGGTGAGAGCGATACTTTCAACGACGAGCAACGTTCGAACCAG TGTAGCACAAATGAGTAAACAATGGCCGACGGGACAAAACGGAGGTTCCC TCCTGTTTTCCAACTGTCTGGAGAGGAACAGTTCTTATCGACTGTGGCAA CGTTTAATTCAGTCAAGGGAGTCGTATTTTTCGTTCTCCAGCATTTGCAA CTTCTTGCCTACGTTTATACTCCACGCTCGCCCCGTCCTCCTTTGTTCTT CTCTCTTGCGTTGGGTAATGACACCCGATGGGTCATGCACACACACTCAC TCTCACAGAATTTGGAAGATCCACATGACCCTGACAACCTTCATCCTCAC CTTCTTCGTTAGCCAGTCGTACGCGATGTGGCGCAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8536:5024..6063+

>mRNA_E_fasciculatus_S2_contig8536.16663.1 ID=mRNA_E_fasciculatus_S2_contig8536.16663.1|Name=mRNA_E_fasciculatus_S2_contig8536.16663.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8536:5024..6063+ (Ectocarpus fasciculatus EfasUO2)
GATCCTGTCATCGAACAATTTGTGCCTACCCGCGCGGTTCTTTGGAGAAA
GTGGAGAGGGACCATGCTGGAAGACACCTGGGAAGCGACCGTGCTTAACA
TGGGCGTTGCGTTGGTCGTGTGCTTGGCGTATCAAAGGCTGCAAGTTTCC
TGCCCTCGCCTCTCCGAGCAGCTGTTCAAGATTGACATAATTTGGAAGAT
CCACATGACCCTGACAACCTTCATCCTCACCTTCTTCGTTAGCCAGTCGT
ACGCGATGTGGCGCAGGTGA
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