mRNA_E_fasciculatus_S2_contig8528.16660.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8528.16660.1
Unique NamemRNA_E_fasciculatus_S2_contig8528.16660.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8528.16660.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW60_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 8.750e-52
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 ESATGAPGASDTTSRIYEEAASLLAHNRAVLGQALARSGNTERGIQELELACPEILEYQQNAQGRRDSKSWLHCYANLAEMYKTQKRFEEASSLL 285
            ESATGAPGASDTTSRIYEEAASLLAHNRAVLGQALARSGNT+RGIQELELACPEILEYQQNAQGRRDSKSWLHCYANLAEMYKTQKRFEEASSLL
Sbjct:  226 ESATGAPGASDTTSRIYEEAASLLAHNRAVLGQALARSGNTDRGIQELELACPEILEYQQNAQGRRDSKSWLHCYANLAEMYKTQKRFEEASSLL 320
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BLAST of mRNA_E_fasciculatus_S2_contig8528.16660.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX8_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.210e-31
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:  100 ALARSGNTERGIQELELACPEILEYQQNAQGRRDSKSWLHCYANLAEMYKTQKRFEEASSLL 285
            ALARSGNT+RGIQELELACPEILEYQQNAQGRRDSKSWLHCYANLAEMYKTQKRFEEASSLL
Sbjct:  133 ALARSGNTDRGIQELELACPEILEYQQNAQGRRDSKSWLHCYANLAEMYKTQKRFEEASSLL 194
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8528.16660.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
HTH8.750e-5298.95La-type RNA-binding domain-containing protein n=1 ... [more]
Uncharacterized1.210e-3198.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8528contigE_fasciculatus_S2_contig8528:3688..5392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size287
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000830.1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842511.7713213-CDS-E_fasciculatus_S2_contig8528:3687..38951696842511.7713213-CDS-E_fasciculatus_S2_contig8528:3687..3895Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8528 3688..3895 +
1696842511.7836728-CDS-E_fasciculatus_S2_contig8528:5313..53901696842511.7836728-CDS-E_fasciculatus_S2_contig8528:5313..5390Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8528 5314..5390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8528.16660.1prot_E_fasciculatus_S2_contig8528.16660.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8528 3688..5390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8528.16660.1

>prot_E_fasciculatus_S2_contig8528.16660.1 ID=prot_E_fasciculatus_S2_contig8528.16660.1|Name=mRNA_E_fasciculatus_S2_contig8528.16660.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp
ESATGAPGASDTTSRIYEEAASLLAHNRAVLGQALARSGNTERGIQELEL
ACPEILEYQQNAQGRRDSKSWLHCYANLAEMYKTQKRFEEASSLL
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mRNA from alignment at E_fasciculatus_S2_contig8528:3688..5392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8528.16660.1 ID=mRNA_E_fasciculatus_S2_contig8528.16660.1|Name=mRNA_E_fasciculatus_S2_contig8528.16660.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1705bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8528:3688..5392+ (Ectocarpus fasciculatus EfasUO2)
GAGAGTGCGACGGGCGCACCGGGGGCCTCAGACACGACGTCTCGCATTTA
CGAGGAGGCGGCTAGCCTGCTGGCGCACAATCGTGCGGTGCTGGGGCAGG
CGCTAGCCCGCTCGGGCAACACGGAGCGAGGGATCCAAGAGCTAGAGCTG
GCGTGCCCGGAGATATTGGAGTACCAGCAGAACGCTCAGGGCAGACGCGA
CAGCAAAAGTGAGAGGGTTGTATATCCTGCTAACTGCTAACTGCTGCCTG
CGTGTCTGCTCTGCGTCGGTGTTGTGGTGGCTGTGCCCAATTGTACTTGT
ATGACGGAGAATTTTTTGTCACAGCGTGGTGTGTTTATTTCTATATTAGA
CTAGTCTAGTTGACAAGAAAACGTTCTGACAGTCACATTTTATCCGTTCG
CTTCCGTTTGACGCCTTACGCATACGTGTTGCGAAAAGATCACGTGCATT
CATGGATGCTCGTGCACTGCTGCTTCTTCACTACTAGCGTGGCATCCCTA
GCACGCTTGGGGCAGGCGACATGACCAGTCACCCTCGGCATGATTATTAG
TCGACCCATCTCGATGTGTACCAAAAAAATCACAGAAGAAATTCGAAATA
TCAAGTATCCGGCTGACAAGGATGGACAAGTCCAGTTCGCGGTTCTATAG
GTGACGGTTTGTTACTCGGACGTTGAAGTTCCCCGCTGACACCCCACGGT
TCTGAAATGCGTCATATGCATATGCGTACGCACGGGCAAGGTCATGTCGC
CTTGCGTAATTGGGTGTCATGATTTTACATTTTTGCTGTCGCCGCGAGGC
AACAAATAAATGTGTGCGGAAGTGTAACGCCTCCGGAAAACTCAAAGTAG
ATTCAAGGAAGCCTGTATCCCGATTGGTGGAACAGATTAAATTTTTGCTG
TGTCTTCGTGAGAAGATATCAAGAACCAAGGTCCCTTATGTTTGTTGTGA
CGTGGTAGATGAGTATGCGAGTGTGAAGTATATACGTCGCGTCTGATATT
GCGAGCGAGCGCATCAGGGTCTTGCTTGCCGCCCGCCCCCCATATCCTCC
GGCAATACGGGGGTGTCTGTCCTCGTTTTTTTGGAATTTTCAAGTCGTTC
TGTATTTCGAAAAAAGCGAGTGGGTGCCGCTCCTGTTATCTAAGCTTGGG
CTGCAGCTGCAGACACGTGGCAACATGTGCGTTTGTGCCCTCCCCGGAGT
TACCCTTTCAGAGGAAGTGATTTCAACTAAAAACATTTTCTTCAAAATAA
AAATAAACGAACGAGATCTGGTGTGCTCGTCGACCCTGTTACCCCGAGGA
TGGTTCGGCGTCCGGAAGTGCAGGCTGTTCGCCGCTTATGAACACGGCAA
TTGGTCTCTCCCTCTGTTGGATCTTTTGACGCTGAGACTGACTGTTTTTC
CATTTTGTTTTACCCCTTTTGGAGTAAGGGCGTTCCCCACCGTAAGGATT
GTTTGCGCAAGTTCGCGGGCGTTGCTGCGTCCACTGCTGCTGTGCACCCA
GCACCAGCGGCATCAGTATGCATACCCCCCTCTTCCAATGCCCCGAGAAC
CCGACACGCCTCCGCCCAGCCCCCCTAAAAAAACGCCTTCCTTCCGTGTG
TCCTCCCTCCCTAACTCCTTCGGTAGGCTGGCTGCACTGCTACGCGAACC
TGGCCGAGATGTACAAGACGCAGAAGCGTTTCGAAGAAGCGTCGAGCCTG
TTGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8528:3688..5392+

>mRNA_E_fasciculatus_S2_contig8528.16660.1 ID=mRNA_E_fasciculatus_S2_contig8528.16660.1|Name=mRNA_E_fasciculatus_S2_contig8528.16660.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8528:3688..5392+ (Ectocarpus fasciculatus EfasUO2)
GAGAGTGCGACGGGCGCACCGGGGGCCTCAGACACGACGTCTCGCATTTA
CGAGGAGGCGGCTAGCCTGCTGGCGCACAATCGTGCGGTGCTGGGGCAGG
CGCTAGCCCGCTCGGGCAACACGGAGCGAGGGATCCAAGAGCTAGAGCTG
GCGTGCCCGGAGATATTGGAGTACCAGCAGAACGCTCAGGGCAGACGCGA
CAGCAAAAGCTGGCTGCACTGCTACGCGAACCTGGCCGAGATGTACAAGA
CGCAGAAGCGTTTCGAAGAAGCGTCGAGCCTGTTG
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