mRNA_E_fasciculatus_S2_contig8501.16637.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8501.16637.1
Unique NamemRNA_E_fasciculatus_S2_contig8501.16637.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8501.16637.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG81_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 9.570e-131
Identity = 181/191 (94.76%), Postives = 185/191 (96.86%), Query Frame = 1 
Query:    1 NLCRDKAVKLLKEGKAELSVEWFSKAIRLRPGDASLYWGRSQSWERAGNPRKAVVDAGIGVCLRPRVAAGFARLSASFEAKGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRLGGTALVLEACAGGQGLSSPPWPRGAMPPVLLEAP 573
            NLCRDKAVKLLKEGKAELSVEWFSKAIRLRP DASLYWGRSQSWERAGNPRKAVVDAG+GVCLRPRVAAGFARLSA+FEA+GRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLR+GG  L L AC GGQGLSSPPWPRGAMPPVLLEAP
Sbjct:   18 NLCRDKAVKLLKEGKAELSVEWFSKAIRLRPADASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSATFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALGACEGGQGLSSPPWPRGAMPPVLLEAP 208
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BLAST of mRNA_E_fasciculatus_S2_contig8501.16637.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 3.600e-96
Identity = 137/145 (94.48%), Postives = 140/145 (96.55%), Query Frame = 1 
Query:  139 AGNPRKAVVDAGIGVCLRPRVAAGFARLSASFEAKGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRLGGTALVLEACAGGQGLSSPPWPRGAMPPVLLEAP 573
            AGNPRKAVVDAG+GVCLRPRVAAGFARLSASFEA+GRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLR+GG  L L ACAGGQG SSPPWPRGAMPPVLLEAP
Sbjct:    2 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALAACAGGQGFSSPPWPRGAMPPVLLEAP 146
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8501.16637.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.570e-13194.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.600e-9694.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8501contigE_fasciculatus_S2_contig8501:1962..4741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size576
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002070.1
Cds size576
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842509.776998-CDS-E_fasciculatus_S2_contig8501:1961..21421696842509.776998-CDS-E_fasciculatus_S2_contig8501:1961..2142Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8501 1962..2142 -
1696842509.7924635-CDS-E_fasciculatus_S2_contig8501:2902..30181696842509.7924635-CDS-E_fasciculatus_S2_contig8501:2902..3018Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8501 2903..3018 -
1696842509.8016264-CDS-E_fasciculatus_S2_contig8501:3397..36111696842509.8016264-CDS-E_fasciculatus_S2_contig8501:3397..3611Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8501 3398..3611 -
1696842509.8114069-CDS-E_fasciculatus_S2_contig8501:4676..47411696842509.8114069-CDS-E_fasciculatus_S2_contig8501:4676..4741Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8501 4677..4741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8501.16637.1prot_E_fasciculatus_S2_contig8501.16637.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8501 1962..4741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8501.16637.1

>prot_E_fasciculatus_S2_contig8501.16637.1 ID=prot_E_fasciculatus_S2_contig8501.16637.1|Name=mRNA_E_fasciculatus_S2_contig8501.16637.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=192bp
NLCRDKAVKLLKEGKAELSVEWFSKAIRLRPGDASLYWGRSQSWERAGNP
RKAVVDAGIGVCLRPRVAAGFARLSASFEAKGRHADVVRACFLGMRCGDS
SKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAG
IAGRLRLGGTALVLEACAGGQGLSSPPWPRGAMPPVLLEAP*
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mRNA from alignment at E_fasciculatus_S2_contig8501:1962..4741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8501.16637.1 ID=mRNA_E_fasciculatus_S2_contig8501.16637.1|Name=mRNA_E_fasciculatus_S2_contig8501.16637.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8501:1962..4741- (Ectocarpus fasciculatus EfasUO2)
AACCTCTGCCGGGACAAAGCCGTGAAGTTGCTGAAAGAAGGAAAGGCTGA
GCTTTCCGTGGAGTGGTGAGCGTGCATATATTTTGTGCCCCCCGATTCAA
AATGTTGAAATGTTGAAACATCAATCAAGGTCCAGCTATAGGAAGAAGCG
TGGTACTTACAGTACAGAGAGAACCTTACTGTGATCGTCACTGCGCTAAG
CCAACGCAAGACACAGCATTGCAAAATCTGCACCGCCATTAGGTGCATTT
TGTGCTCGCACACCTGCCGTCCCCACCGACGTTCTCTCAGTAGTAGGACC
GCTGTTCCGTAGGCGTTTGGTTTCCCAGACGGCAACCACGACCGAATACA
TTCAGCAGGTACATGTAGTCGTGCAATCACCAGAACAAGGGGTCGACCGA
CCTGTTGGAAACGGATGATTTCACATCAAACCAAATGCGCGCAATATACA
TATCAAATGTGTTCCTTGAGTCTAGTACGTTGTCCCGTAGGGCGTGCGCT
GTGGTGCTGCCTCTCTGCTGTGCGGGAGATACAGCAACCCCGCCCGTCTG
CATGGGTACCACGCATACAATACATATCTTGCTGTCCTTGTGTGTGGTGG
TGTTTTTTTCTTCACGACGACGGGAGAACAAGACAGGCGCTCCGTGTCAA
CCAAGGAATCTTCCGTACCCAAGAAACACTGCTATCGCAACAGAAATCAA
ACCACTAGCCTAGAGCGGTCAGCGTTGCCTGGTGTGCTTGGCTTGAGTTT
GGCTGCTATGTCTAGACAAGAAACGTCATGGTTCTTGAAGGAACGAGGGG
GAGGGGGGAGCGAGATGTGAGACAACGGCAGAGTTAGGCGAAGGGGGTAA
CTGCTGTTGATGGGAATGGAGAGGGCGAGGGACCAAGATGGGGGTGGGGT
TTGGGACGGGAAGCAATGACCGCCCCCAAACAAATCAGCTACAAATTATA
TTGGAACATGTAGTATGTGCGGGATCGAGCAAGGTAGGGAGGGCTCTGAA
CCTGAACATGATCGCCTGCTGCATGCTATCAGCGTCCTACACAGCCGATT
TCACAGTAGCACGACCAACACTCGCCCGTTCTGTAGTCAATGGATCATGA
CGTTCATGCAACTGCCCTCTCCTCGTCCAGGTTCAGCAAGGCCATTCGAT
TAAGGCCGGGGGATGCGTCGCTGTACTGGGGGAGGTCTCAGTCGTGGGAG
CGGGCCGGAAACCCTCGGAAGGCGGTCGTAGATGCAGGGATCGGGGTGTG
CTTGCGGCCGAGGGTGGCGGCCGGCTTCGCCAGGTTGTCGGCGTCGTTCG
AGGCAAAGGGGCGGCACGCCGATGTCGTCCGAGCGTGCTTCTTGGTGAGT
TGAACTGTTTAGACAGGGCGTGGTGCGAAGAACAGACGTAGTCGTCGGTG
CACACGGGCGATGGAAAAGGCGATGGTGGTGTGCTGCCGTTCGGTTTGTT
GCTGGTCGGTTGTCGTGGTTGCTGTCGCGGCATCGTACATGCGTGAATTT
CTTTTTTTTTATTGTTCCGGTTTTCTTGACACACTACAGAACAACAGTTG
GTCGCCGAAGTCAGCACACATTTTCTCCGATTCAACGGTGCATGCGGGAA
CTAATTCATATTTTGGCCGGTGGCCTTGCACCAAGCCGCCGACCTGTTGT
CATGCACTTTCGGGGTCATACATGTTTTTCGTTGTTCGTTTGTGATGGAT
GCTGTTGCTCTCGTCGATTACAGGGTATGAGATGCGGCGACAGCAGCAAG
AACGGTGAGCTTGGCCGGCGCATGTCTAGCGCGAGAGAGGCCGGCCAGCT
ACCTCCGTTGGATTGGACCCCGCCGGATAGACGGGAGAGGTATGGACGTA
GCTGCTAGTGATTCAACACGAGGCACTCGAGCACAGGCTTTGCTGCACCT
CGTTTGGTCTGGGGTTGAAAGCTCAGCGTGGAGACAGCGCCGCCCGTGGG
CTTAACGAGGCAGACGAGGTTAACGGAGAGGTAAACGGACTCATACTCAT
CTCGAGTGAAACCACCGCAAACGACACGAGTATGGAGTATTTTCTTTGAC
CCAACCCAGCCGAACTCGCAGGCGATATACGCACTAAGGACACGGCACGC
GGACACCGCAGGTTGCGTAAGATATCACGCCCCCTGGACAGATTTGCAAA
ACTCGATTACTCCGCGACGAAGAGGATGCCGAAATCAAAGAAAATGTTTT
CGGAAAGCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGACGAGACAG
ACGGTTCCAACGCCATTGCCATTTTCGGCACCGTCAATCCTTTTTCTGCC
GAGAAATCAAGCTTCGAAAATCGGTCCTGGGGGTGTGATATCTTCAGCAA
TCTATGGTACACCCTTTCCGGAAAATGTGTTCGTAGCGTGTACTGATTGA
TCCAATATCGGTGCGGATTGCCGGTGTGACTAGAGGGAGTGTTCCCTCGC
TCATCGCATGCAGTCATAGCGTGATTGTTCTTGAGAGATAACAACACTTG
AGGCAACTAACACGAACCACCACCACGACATCCGTCCAAACTTTCACCAA
GAGCAACAACTAGCAACAATGCCACCACAACAACAATATTGAACGGCAGG
TGGACCTGGGCGTTCCTGTCCTTCCGCGGCTTCCTCTTGCGCCTGGCGGC
GGGGATCGCCGGACGGCTCCGGCTGGGCGGAACAGCCCTAGTGCTCGAGG
CTTGCGCAGGGGGGCAAGGGTTGTCGAGCCCACCGTGGCCACGAGGGGCT
ATGCCTCCGGTGCTTCTGGAGGCGCCGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8501:1962..4741-

>mRNA_E_fasciculatus_S2_contig8501.16637.1 ID=mRNA_E_fasciculatus_S2_contig8501.16637.1|Name=mRNA_E_fasciculatus_S2_contig8501.16637.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8501:1962..4741- (Ectocarpus fasciculatus EfasUO2)
AACCTCTGCCGGGACAAAGCCGTGAAGTTGCTGAAAGAAGGAAAGGCTGA
GCTTTCCGTGGAGTGGTTCAGCAAGGCCATTCGATTAAGGCCGGGGGATG
CGTCGCTGTACTGGGGGAGGTCTCAGTCGTGGGAGCGGGCCGGAAACCCT
CGGAAGGCGGTCGTAGATGCAGGGATCGGGGTGTGCTTGCGGCCGAGGGT
GGCGGCCGGCTTCGCCAGGTTGTCGGCGTCGTTCGAGGCAAAGGGGCGGC
ACGCCGATGTCGTCCGAGCGTGCTTCTTGGGTATGAGATGCGGCGACAGC
AGCAAGAACGGTGAGCTTGGCCGGCGCATGTCTAGCGCGAGAGAGGCCGG
CCAGCTACCTCCGTTGGATTGGACCCCGCCGGATAGACGGGAGAGGTGGA
CCTGGGCGTTCCTGTCCTTCCGCGGCTTCCTCTTGCGCCTGGCGGCGGGG
ATCGCCGGACGGCTCCGGCTGGGCGGAACAGCCCTAGTGCTCGAGGCTTG
CGCAGGGGGGCAAGGGTTGTCGAGCCCACCGTGGCCACGAGGGGCTATGC
CTCCGGTGCTTCTGGAGGCGCCGTAG
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