mRNA_E_fasciculatus_S2_contig8496.16624.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8496.16624.1
Unique NamemRNA_E_fasciculatus_S2_contig8496.16624.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.900e-12
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  106 SRCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
            S+CLDAF VAL+  CD  ++RWY ST ELQL SL+FC  CR+V T  +R+
Sbjct:   39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRV 88          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.930e-11
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
            R  DAF +ALS  C+ G++RWYTST+ELQL SLD C  CR+  T  +R+
Sbjct:    8 RSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRV 56          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.550e-10
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
            RCLDAF +ALS  C+ G++RWY ST ELQL SLD C  CR  +   + +
Sbjct:   10 RCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHV 58          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.590e-10
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   97 GNSSRCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
            GNS +CLDAF VAL+  CD  ++RWY ST ELQL SL+ C  CR V T  +R+
Sbjct:    5 GNS-KCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRV 56          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.800e-9
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query:  109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRN 231
            RCLDAF VALS   + G++RWYTST +LQLASL+FC  CR+
Sbjct:    8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRS 48          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.640e-8
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:  106 SRCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
            S CL AF VAL+  C+  ++RWY ST ELQL SL+FC  CR V T  +R+
Sbjct:   15 SECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRV 64          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.320e-8
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
            +C DAF VALS  C+ G +R YTST EL LASLD C   R+ +T  +R+
Sbjct:   21 QCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRV 69          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.590e-8
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNV 234
            RCL+AF VAL+  CD     WYTST ELQLASL FC++CR V
Sbjct:    6 RCLEAFAVALNTSCDGNV--WYTSTKELQLASLQFCVKCRKV 45          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.200e-8
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1
Query:  109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNV 234
            RCLDAF VAL+  CD   ++WYTS + LQLASL FC+ CRNV
Sbjct:   35 RCLDAFVVALNQSCDG--KKWYTSIAGLQLASLAFCVACRNV 74          
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.260e-8
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  112 CLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
            CL+A  VAL+  CD   + WYTST ELQLASLDFC+ CRN  T  + +
Sbjct:   51 CLEALIVALNETCDG--KSWYTSTKELQLASLDFCIACRNCQTVHLNV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.900e-1258.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.930e-1155.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.550e-1053.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.590e-1056.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.800e-965.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.640e-854.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.320e-853.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.590e-864.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.200e-864.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.260e-856.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8496contigE_fasciculatus_S2_contig8496:2579..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842508.2845266-CDS-E_fasciculatus_S2_contig8496:2578..28331696842508.2845266-CDS-E_fasciculatus_S2_contig8496:2578..2833Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8496 2579..2833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8496.16624.1prot_E_fasciculatus_S2_contig8496.16624.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8496 2579..2833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8496.16624.1

>prot_E_fasciculatus_S2_contig8496.16624.1 ID=prot_E_fasciculatus_S2_contig8496.16624.1|Name=mRNA_E_fasciculatus_S2_contig8496.16624.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=85bp
TTVSYIPCAETLFLYSSYRNTSTQRMPAAPLSGNSSRCLDAFTVALSHGC
DEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM
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mRNA from alignment at E_fasciculatus_S2_contig8496:2579..2834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8496.16624.1 ID=mRNA_E_fasciculatus_S2_contig8496.16624.1|Name=mRNA_E_fasciculatus_S2_contig8496.16624.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=256bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8496:2579..2834+ (Ectocarpus fasciculatus EfasUO2)
ACAACAGTATCCTACATACCCTGCGCCGAAACCCTTTTCCTGTATTCGTC TTACCGAAACACCTCTACACAACGCATGCCAGCTGCTCCATTGTCAGGGA ACAGCAGCCGGTGTCTGGACGCGTTCACCGTTGCCTTAAGCCACGGGTGT GATGAGGGCCAACGTCGTTGGTACACATCAACGTCAGAACTACAGCTGGC ATCACTAGACTTCTGCCTGGAGTGCCGAAACGTAACGACGTCACGCATTC GGATGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8496:2579..2834+

>mRNA_E_fasciculatus_S2_contig8496.16624.1 ID=mRNA_E_fasciculatus_S2_contig8496.16624.1|Name=mRNA_E_fasciculatus_S2_contig8496.16624.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=255bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8496:2579..2834+ (Ectocarpus fasciculatus EfasUO2)
ACAACAGTATCCTACATACCCTGCGCCGAAACCCTTTTCCTGTATTCGTC
TTACCGAAACACCTCTACACAACGCATGCCAGCTGCTCCATTGTCAGGGA
ACAGCAGCCGGTGTCTGGACGCGTTCACCGTTGCCTTAAGCCACGGGTGT
GATGAGGGCCAACGTCGTTGGTACACATCAACGTCAGAACTACAGCTGGC
ATCACTAGACTTCTGCCTGGAGTGCCGAAACGTAACGACGTCACGCATTC
GGATG
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