mRNA_E_fasciculatus_S2_contig8493.16622.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8493.16622.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU3_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.690e-39 Identity = 111/206 (53.88%), Postives = 130/206 (63.11%), Query Frame = 1
Query: 34 QGVELLEEGSGGRGGADLKTAMTTVAEFEFDSGNGGMFAAPLAGGNAVDSAKTSEENEAFLMGG-ADTXXXXXXXXX--PGWMKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTIKDVEEVFAHVTDTTATLAVGFFSLRFGGKTPALVATLVM-LAATRSVVSAASTSGLSGAGMTSADM---GSSGTCE-PGNTTDWATLIVF 627
+GVE L+EGSGG G D++T MT+ AEF + N G F APL GG+ VDSAKTSEE+EAF G ADT GW K+F N F K SGRKLLLMAK D+E+++A+V DTTA V + SLRFGGKTPAL+A+LV AA SVVSA STS LS G TSADM GSSGT PG+ TD AT +F
Sbjct: 109 KGVEALQEGSGGGAGTDVETTMTSKAEF---NRNAGTFVAPLGGGS-VDSAKTSEEDEAFFATGHADTRQQQQHLHQHPSGWTKSFKNVFTKSSGRKLLLMAK--------------DLEKMYAYVEDTTAAALVFYASLRFGGKTPALLASLVTGAAAASSVVSANSTSSLS-PGTTSADMSDIGSSGTTSVPGDRTDEATWTLF 295
BLAST of mRNA_E_fasciculatus_S2_contig8493.16622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU55_ECTSI) HSP 1 Score: 135 bits (339), Expect = 5.910e-34 Identity = 103/219 (47.03%), Postives = 131/219 (59.82%), Query Frame = 1
Query: 133 NGGMFAAPLAGGNAVDSAKTSEENEAFLM-GGADTXXXXXXXXXP-GWMKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTIKDVEEVFAHVTDTTATLAVGFFSLRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSG-------TCEPGNTTDWAT--LIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIRGGGAS 756
NGG F APL G+ VDSAKTSEE+EAF G ADT P GW K+F N F K SGRKLLLMAK D+E+++A+V TTA+ + + SLRFGGKTPAL+A+LV AA S VSAASTSGLS AG TSADM G T PG+ TD AT L+V+++ + V ++++ + + WVL ++ W M R R G+S
Sbjct: 10 NGGTFVAPLGRGS-VDSAKTSEEDEAFFATGDADTRQQQHLHQYPPGWTKSFKNVFTKSSGRKLLLMAK--------------DLEKMYAYVEGTTASALIFYGSLRFGGKTPALLASLVTGAAASSFVSAASTSGLS-AGTTSADMSDIGSGKKGGTTSVPGDRTDDATWTLLVWIISIGVAMVVAWIVWLSPL--WVLLNLLVWAESMSRSRRRGSS 210
BLAST of mRNA_E_fasciculatus_S2_contig8493.16622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G964_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.070e-22 Identity = 78/156 (50.00%), Postives = 97/156 (62.18%), Query Frame = 1
Query: 34 QGVELLEEGSGGRGGADLKTAMTTVAEFEFDSGNGGMFAAPLAGGNAVDSAKTSEENEAFLM-GGADTXXXXXXXXXP-GWMKAFMNFFNKLSGRKLLLMAKTSAR--GLIDRGPTIKDVEEVFAHVTDT-TATLAVGFFSLRFGGKTPALVATLV 486
+GVE+L+EGSGG AD++T + T EF +GNGG F APL GG +VDSAK E EAF GGAD P WM+AF F + SGRKLL MAK SA G++ R T K +E++ AHV DT TA++ +G SLRFG K L+ TLV
Sbjct: 157 EGVEVLQEGSGGS--ADVETYVQTTHEF---NGNGGGFVAPLGGGTSVDSAKGLEGGEAFFATGGADARMEHQQHQHPPDWMRAFERFRPRTSGRKLLGMAKASAGSGGVVRRFMT-KGLEKLHAHVADTATASVLIGCASLRFGSKA-VLLLTLV 305
BLAST of mRNA_E_fasciculatus_S2_contig8493.16622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI1_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.690e-21 Identity = 77/167 (46.11%), Postives = 98/167 (58.68%), Query Frame = 1
Query: 262 PGWMKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTIKDVEEVFAHVTDTTATLAVGFFSLRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSGTCEP--GNTTDWATLIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIRGGGAS 756
P M+A NF K+S ++ +RGL+ +G E+++AHVT TTA LA+G+ SLR GGK PAL+ATLVM A SVVSAA+TS LS AG T+AD GSSGT G+ TD AT +F + N+ + M WVL T+ W RR R R GAS
Sbjct: 115 PDSMEAAKNFSTKISDGRVF------SRGLLTKG-----FEKLYAHVTVTTAFLALGYASLRIGGKAPALLATLVMKAGALSVVSAATTSCLS-AGATTADTGSSGTTSVLHGDVTDNATWTLFSWMANIGAATALARSMWVFALWVLVTLAFWARRRSRSRNNGAS 269
BLAST of mRNA_E_fasciculatus_S2_contig8493.16622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC7_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 3.800e-15 Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 1
Query: 262 PGWMKAFMNFFNKLSGRKLLLMAKTSARGLIDRGPTIKDVEEVFAHVTDTTATLAVGFFS-LRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSGTCE-PGNTTDWATLIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIRGGGAS 756
P +A NFF K TSA + RG K E+++ H DTTA+ A+G+FS LRFGG TPAL+ATLV A T SV SAA+TS LS AG T AD+GS T + PG+ D AT +F L++ M+ VLAT+ W R G S
Sbjct: 89 PDSTEAVKNFFTK-----------TSAGRVFSRGLLTKGFEKLYTHAADTTASFALGYFSSLRFGGNTPALLATLVTAAGTLSVASAATTSCLS-AGTTVADIGSRATTDVPGDLADDATWALFSLLMKFGGATVLARIMQISALSVLATLAFWATSRSRKNGASVS 243
BLAST of mRNA_E_fasciculatus_S2_contig8493.16622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5K9_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.310e-14 Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 361 GPTIKDVEEVFAHVTDTTATLAVGFFSLRFGGKTPALVATLVMLAATRSVVSAASTSGLSGAGMTSADMGSSGTCE-PGNTTDWATLIVFLLILNVIVMISATLGMRTCLQWVLATVVEWTRRMGRIR 741
G I+ VE+V DTTA+LA+ + SLR GGKTPAL++TLV A SVV+AA+TS S AGMTSA++GSS T PG+ D AT +F I N+ + MR WVLAT+ W RR R R
Sbjct: 167 GADIRGVEKV----CDTTASLALRYASLRLGGKTPALLSTLVTGAGALSVVAAATTSCFS-AGMTSAEIGSSKTTSVPGDLADDATWALFSWITNIGAATALAWSMRVFALWVLATLACWARRRNRSR 289 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8493.16622.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8493.16622.1 >prot_E_fasciculatus_S2_contig8493.16622.1 ID=prot_E_fasciculatus_S2_contig8493.16622.1|Name=mRNA_E_fasciculatus_S2_contig8493.16622.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=253bp MPPPPPPTPNRQGVELLEEGSGGRGGADLKTAMTTVAEFEFDSGNGGMFAback to top mRNA from alignment at E_fasciculatus_S2_contig8493:2484..6623- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8493.16622.1 ID=mRNA_E_fasciculatus_S2_contig8493.16622.1|Name=mRNA_E_fasciculatus_S2_contig8493.16622.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4140bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8493:2484..6623- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8493:2484..6623- >mRNA_E_fasciculatus_S2_contig8493.16622.1 ID=mRNA_E_fasciculatus_S2_contig8493.16622.1|Name=mRNA_E_fasciculatus_S2_contig8493.16622.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8493:2484..6623- (Ectocarpus fasciculatus EfasUO2)back to top |