mRNA_E_fasciculatus_S2_contig849.16618.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Presumed (helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI) HSP 1 Score: 150 bits (378), Expect = 2.700e-40 Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREAS 247
QYRMHPEIRAFPSARFY GRLTDAPCVRDQAAIPA SPSSETT ALP LGPCFPPFLLVDVSSGSERRAG+SYQNPREAS
Sbjct: 481 QYRMHPEIRAFPSARFYNGRLTDAPCVRDQAAIPAQSPSSETT---ALPPLGPCFPPFLLVDVSSGSERRAGSSYQNPREAS 559
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: AAA_12 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE) HSP 1 Score: 131 bits (330), Expect = 7.230e-34 Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 2
Query: 23 IRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREAS 247
+ A SARFY GRLTDAPCVRDQAAIPAPSPSSE TG ALP LGPCFPPFLLVDVSSGSERRAG+SYQNPREAS
Sbjct: 9 VPAGSSARFYNGRLTDAPCVRDQAAIPAPSPSSEATGPLALPPLGPCFPPFLLVDVSSGSERRAGSSYQNPREAS 83
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLJ6_HETAK) HSP 1 Score: 67.0 bits (162), Expect = 7.000e-12 Identity = 37/83 (44.58%), Postives = 43/83 (51.81%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPS--PSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 244
QYRMHP +RAFPS RFY G+L DAP + + PS PS CF PFL D++ E R G S QN EA
Sbjct: 48 QYRMHPAVRAFPSKRFYNGQLADAPALASLGPLGIPSDWPSFHRHR---------CFAPFLFYDLTGSQEERIGTSVQNSAEA 121
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Helicase (SEN1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M3W6_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 7.790e-11 Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPC--FPPFLLVDVSSGSERRAGNSYQNPREA 244
QYRMHPEIR FPS FYQGRLTDAP V A PAP S+ PC P++ DV+ G+ER G S QN EA
Sbjct: 303 QYRMHPEIREFPSDFFYQGRLTDAPSVL--AREPAPFYSA------------PCGVLKPYVAFDVARGAERFVGKSAQNEAEA 371
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Helicase (sen1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VM64_9CHLO) HSP 1 Score: 61.2 bits (147), Expect = 4.590e-9 Identity = 37/84 (44.05%), Postives = 42/84 (50.00%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLG-PCFPPFLLVDVSSGSERR--AGNSYQNPREA 244
QYRMHP IR FPSA FYQGRL DA ++D P P G P P++ DVS G E+R G S N EA
Sbjct: 781 QYRMHPAIRQFPSAHFYQGRLRDADSIQDM---------------PPAPFYGHPLMKPYVFFDVSKGQEQRREGGGSLSNRAEA 849
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Helicase (n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NTY7_9CHLO) HSP 1 Score: 60.8 bits (146), Expect = 6.190e-9 Identity = 39/81 (48.15%), Postives = 44/81 (54.32%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 244
QYRMHP+IRAFPS FY GRL DAP V A PAP G P+ P+ + D S G+ER G S QN EA
Sbjct: 868 QYRMHPQIRAFPSNYFYGGRLVDAPAVL--ARPPAPF-----YGDPSG-----LLQPYRVFDASRGAERFVGRSAQNEAEA 936
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WJ40_9CHLO) HSP 1 Score: 60.5 bits (145), Expect = 8.470e-9 Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQN 232
QYRMHPEIRAFPSA FY+GRL D V AA P P +++ P+++ DV+ G E+ AG S N
Sbjct: 858 QYRMHPEIRAFPSAFFYKGRLQDGESVLAAAARPPPFYAADL------------LKPYVVYDVAGGREQLAGRSRAN 922
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBP1_CHLIN) HSP 1 Score: 60.1 bits (144), Expect = 1.160e-8 Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 244
QYRMHPEIRAFPSA FY+GRL D V AA P +++ P+++ DV+ G E+ AG S N EA
Sbjct: 833 QYRMHPEIRAFPSAYFYKGRLQDGESVLAAAARPPAFYAADL------------LKPYVVYDVAGGREQLAGRSRANEAEA 901
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KWM0_MICPS) HSP 1 Score: 59.7 bits (143), Expect = 1.210e-8 Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQ--AAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAG 217
QYRMHP+I AFPSARFY G + DA V+++ A + +P +E SP FL VDV+SG E RAG
Sbjct: 37 QYRMHPDISAFPSARFYAGAVRDADAVKNRRLARLFPMAPPNEWIRSP-----------FLFVDVASGREERAG 99
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Uncharacterized (protein n=5 Tax=Lactuca TaxID=4235 RepID=A0A2J6JUT4_LACSA) HSP 1 Score: 58.5 bits (140), Expect = 4.020e-8 Identity = 36/83 (43.37%), Postives = 42/83 (50.60%), Query Frame = 2
Query: 2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNS--YQNPREA 244
QYRMHP+IR FPS FYQGRLTD+ V+ Q P P L P++ DV+ G E G S YQN EA
Sbjct: 976 QYRMHPQIRDFPSRYFYQGRLTDSESVKSQ-------PDENYYNDPLLR-------PYVFYDVTHGRESHRGGSVSYQNVHEA 1044 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig849.16618.1 >prot_E_fasciculatus_S2_contig849.16618.1 ID=prot_E_fasciculatus_S2_contig849.16618.1|Name=mRNA_E_fasciculatus_S2_contig849.16618.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=79bp MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPback to top mRNA from alignment at E_fasciculatus_S2_contig849:19873..21091- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig849.16618.1 ID=mRNA_E_fasciculatus_S2_contig849.16618.1|Name=mRNA_E_fasciculatus_S2_contig849.16618.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:19873..21091- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig849:19873..21091- >mRNA_E_fasciculatus_S2_contig849.16618.1 ID=mRNA_E_fasciculatus_S2_contig849.16618.1|Name=mRNA_E_fasciculatus_S2_contig849.16618.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=237bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:19873..21091- (Ectocarpus fasciculatus EfasUO2)back to top |