mRNA_E_fasciculatus_S2_contig848.16607.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU79_ECTSI) HSP 1 Score: 501 bits (1290), Expect = 9.870e-174 Identity = 247/254 (97.24%), Postives = 250/254 (98.43%), Query Frame = 2
Query: 110 MAEAEAVSAPSPFKPDKGRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAAADGA 871
MAEAEA+SAPSPFK DKGRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQ+GQSDQIAREEKINTHFVCLTEMDGTL+ELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAP A D A
Sbjct: 1 MAEAEALSAPSPFKSDKGRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQEGQSDQIAREEKINTHFVCLTEMDGTLYELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPTATDDA 254
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLF7_9STRA) HSP 1 Score: 273 bits (697), Expect = 1.570e-84 Identity = 138/230 (60.00%), Postives = 174/230 (75.65%), Query Frame = 2
Query: 167 KRWFPLESNPDVMNKYIAKMGWPA-GAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALA 850
KRWFPLESNP VMN+YI +MG PA A+ F DVYSTEDWAL MVP+PVL V+MLFPIK TE + + E R+ ++ ++++P +Y+MKQTVGNACGTVG+LH NA + +T FL F+ KTR TPA+IA+ L ++DELEE H AAQ+GQSDQ+ ++ INTHFVCL+ +DG L+ELDGRK P+ HG +S ATLL+DAC VV+ FM RD GE+RFTIVALA
Sbjct: 10 KRWFPLESNPAVMNEYIKRMGLPADSAFEFCDVYSTEDWALDMVPRPVLAVIMLFPIKAHTEAYAKAEHERIEKNGQAVSPNVYYMKQTVGNACGTVGILHALGNAG--EHMTFTHGSFLQSFFAKTRDKTPAEIAEILEEDDELEETHASAAQEGQSDQLEHIDDPINTHFVCLSVVDGHLYELDGRKAFPINHGPSSSATLLEDACRVVRDFMQRDEGEVRFTIVALA 237
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNT3_9STRA) HSP 1 Score: 269 bits (687), Expect = 4.530e-83 Identity = 130/234 (55.56%), Postives = 173/234 (73.93%), Query Frame = 2
Query: 167 KRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAAAD 865
KRWFPLESNPDVMN Y+ KMG+P +SF DV STE+WAL MVP PV+ V+MLFPIK TE+ ++EA R+ ++++P +Y+M+QTVGNACGTVG+LH N + + L +L +F+ KT+ TP +IAQ L ++DELEE H AA+ GQS+Q+ ++ INTHFVC + +DG L+ELDGRK+ P+ HG +SP T+L DACA +K+FM RD GE+RFTI+ALA AAD
Sbjct: 9 KRWFPLESNPDVMNNYVEKMGFPTDQFSFCDVLSTEEWALGMVPSPVVAVIMLFPIKPHTEEAAKQEAVRIEREGQTVSPNVYYMRQTVGNACGTVGILHAIGN--MRHLVQLTPGSYLDKFFNKTKTKTPKEIAQYLEEDDELEETHGSAAEAGQSEQLETVDDPINTHFVCFSHVDGHLYELDGRKKHPINHGPSSPTTVLPDACAEIKKFMARDEGEMRFTILALAKTAAD 240
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=15 Tax=Phytophthora TaxID=4783 RepID=H3H379_PHYRM) HSP 1 Score: 268 bits (684), Expect = 1.270e-82 Identity = 133/240 (55.42%), Postives = 177/240 (73.75%), Query Frame = 2
Query: 155 DKGRK--RWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAAAD 865
D+G K RWFPLESNP+VMN Y+ KMG+P A+SF DV STE+WALAMVP PV+ V+MLFPIK TE+ ++EA R+ + + ++P +Y+M+QTVGNACGTVG+LH N + + L +L +F+ T+ TP +IAQ L ++DELEE H AA+ GQS+Q+ ++ INTHFVC + +DGTL+ELDGRK+ P+ HG +SP TLLQDAC +K+FM RD GE+RFTI+ALA A D
Sbjct: 3 DEGNKHKRWFPLESNPEVMNAYVEKMGFPTTAFSFCDVLSTEEWALAMVPSPVVAVIMLFPIKPHTEEADKQEAKRIEKDGQIMSPNVYYMRQTVGNACGTVGILHAIGN--MRHLVRLTPGSYLDKFFNTTKTKTPEEIAQYLEEDDELEETHGSAAEAGQSEQLESVDDPINTHFVCFSCVDGTLYELDGRKKRPINHGPSSPDTLLQDACQAIKKFMARDEGEMRFTILALAKTATD 240
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7C4_9STRA) HSP 1 Score: 267 bits (682), Expect = 1.340e-81 Identity = 133/252 (52.78%), Postives = 176/252 (69.84%), Query Frame = 2
Query: 119 AEAVSAPSPFKPDKGRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKG---ITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAAAD 865
++ AP+ K +KRWFPLESNP VMNKY+ K+G+P Y +V ST+DWAL MVP+PV+GVVMLFP+K+++EKHR EEAAR+ + L ++Y+ KQTVGNACGT+GLLH A NA+ G + L ++ +L+RF +T+ +TP + A AL D+DELEE H AA +GQ+ +E +N HFV + + G L ELDGRK+ P+ HG T+P TLL DAC VV+ FM RDP E+RFTIVALA D
Sbjct: 38 SKEAEAPAEGGKKKRKKRWFPLESNPHVMNKYLEKLGFPTMMYHTVEVMSTDDWALDMVPKPVIGVVMLFPVKDASEKHRHEEAARIAAEGQDLPAEVYYTKQTVGNACGTIGLLHVAANATSFAGSDLVPLGEDSWLYRFLARTKDMTPDERAAALEDDDELEESHGAAASEGQTTVPDIDESVNAHFVAFSNVKGKLVELDGRKKSPIVHGDTTPETLLADACKVVRDFMARDPDEVRFTIVALAANTGD 289
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE8_9STRA) HSP 1 Score: 262 bits (669), Expect = 2.160e-80 Identity = 131/231 (56.71%), Postives = 164/231 (71.00%), Query Frame = 2
Query: 167 KRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAA 859
K+WFPLESNPDVM +YI ++G+ ++F DV ST+DWAL MVPQP L V+MLFP+K ++E HR EEAAR+ + ++P +Y+MKQTVGNACGTVGLLH NA+ T + FL RF +TR TP IA L ++ ELEE H AA +GQS A +E + THFVC E+ G L+ELDGRK P+ HG+T+PA LL+DA VV+ FM RDP ELRFTIVALAP A
Sbjct: 13 KKWFPLESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVSPDVYYMKQTVGNACGTVGLLHAVGNAA-----TKANDSFLSRFLARTRGQTPDAIATVLAEDTELEETHGAAAAEGQSAAPALDEDVTTHFVCFVEVGGRLYELDGRKRSPIDHGATTPAALLRDAARVVRAFMARDPEELRFTIVALAPLA 238
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8F1_VITBC) HSP 1 Score: 261 bits (666), Expect = 5.470e-80 Identity = 131/233 (56.22%), Postives = 168/233 (72.10%), Query Frame = 2
Query: 158 KGRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPA 856
K K+W PLE+NPDVM +YI K+G P DV +TEDWAL MVP+PV G+++LFPIK++TEKHREEEAARV+ + ++++PK+YF KQTVGNACGTVG+LH LN I L E F ++F KT L+P Q A+AL ++DE+EE H E QQGQS R+ ++ THF L EMDG L+ELDGRKE P+ HG +SP T L+DA V QFM RDPGELRF+++A+ A
Sbjct: 7 KSHKKWLPLEANPDVMTEYIMKLGGPP--VQCVDVLTTEDWALDMVPKPVYGLILLFPIKDTTEKHREEEAARVKANGQTVSPKVYFTKQTVGNACGTVGILHTVLN--IRDKQPLGAEGFFNKFLTKTMPLSPDQRAEALEEDDEIEEAHTEVEQQGQSRVPTRDAQVETHFAALIEMDGCLYELDGRKEFPINHGPSSPGTFLKDAVRVAGQFMARDPGELRFSMIAVCKA 235
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQY3_PYTOL) HSP 1 Score: 261 bits (666), Expect = 6.460e-80 Identity = 128/236 (54.24%), Postives = 175/236 (74.15%), Query Frame = 2
Query: 161 GRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAAAD 865
G KRWFPLESNP VMN Y+ K+G+P +SF DV STEDWAL MVP+PV+GV+MLFPIK+ TE +EEAAR+ + + ++P +Y+MKQTVGNACGT+GLLH N + + +T+ +L + + +T TP +IA L ++DELE+ HE AAQ+GQS+Q+ ++ ++THF+C + +DG L+ELDGRK+ P+ HG +S TLL DAC V++QFM RD GE+RFTI+ALA A D
Sbjct: 7 GGKRWFPLESNPAVMNTYVEKLGFPTSDFSFCDVLSTEDWALDMVPKPVVGVLMLFPIKKHTEAFAKEEAARIEKDGQVVSPHVYYMKQTVGNACGTIGLLHAIGN--MRQHVTIPATSYLGKLFNQTVGQTPDKIADYLEEDDELEDTHESAAQEGQSEQVEDVDDPVDTHFICFSCVDGHLYELDGRKKFPINHGPSSQETLLSDACKVIQQFMVRDEGEVRFTILALAKTADD 240
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQF5_HYAAE) HSP 1 Score: 260 bits (665), Expect = 8.240e-80 Identity = 129/239 (53.97%), Postives = 176/239 (73.64%), Query Frame = 2
Query: 155 DKG-RKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAAAD 865
D+G RKRWFPLESNPDVMN Y+ KMG+P +SF DV STE+WAL MV P++ V+MLFPIK TE+ ++EAAR+ + ++++P +Y+M+QTVGNACGTVG+LH N + + L +L +F+ T+ TP +IAQ L ++DELE+ H AA+ GQS+Q+ ++ INTHFVC + +DG L+ELDGRK+ P+ HG +S T+LQDAC V+K+FM RD E+RFTI+ALA AAD
Sbjct: 3 DEGKRKRWFPLESNPDVMNAYVKKMGFPTSQFSFCDVLSTEEWALGMVSTPIVAVLMLFPIKPHTEEADKQEAARIEKEGQTVSPDVYYMRQTVGNACGTVGILHAVGN--MRHLVQLAPGSYLDKFFNTTKTKTPQEIAQYLEEDDELEKTHGGAAEAGQSEQLQSVDDPINTHFVCFSCVDGNLYELDGRKKSPINHGPSSQETILQDACKVIKKFMARDENEMRFTILALAKTAAD 239
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT19_9STRA) HSP 1 Score: 258 bits (660), Expect = 4.720e-79 Identity = 135/236 (57.20%), Postives = 173/236 (73.31%), Query Frame = 2
Query: 167 KRWFPLESNPDVMNKYIAKMGWPAGA-YSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKE-CFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEMDGTLFELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELRFTIVALAPAAAD 865
KRWFPLESNP VMN+YI +MG P A ++F D+YST++WAL MV +PVLGVVMLFPIK +E H +E+ R+ + + ++P +YFMKQTVGNACGTVG+LH NA K ++ FL F+ KT TP +IA L D+DE+EE H AAQ+GQS+Q+ R ++ INTHFVC + +DG L+ELDGRK+ PV HG +S TLL+DAC V++QFM RD GE+RFTIVALA A D
Sbjct: 8 KRWFPLESNPQVMNEYIRRMGIPEDADFAFCDLYSTDEWALEMVLRPVLGVVMLFPIKPVSELHAKEQLERIEKEGQIVSPNVYFMKQTVGNACGTVGILHALGNA---KDYLPPRDGSFLSSFFSKTVGKTPDEIAAILQDDDEIEETHASAAQEGQSEQLERVDDPINTHFVCFSVVDGHLYELDGRKKFPVNHGPSSQETLLEDACRVIRQFMARDEGEVRFTIVALAKALTD 240 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig848.16607.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig848.16607.1 >prot_E_fasciculatus_S2_contig848.16607.1 ID=prot_E_fasciculatus_S2_contig848.16607.1|Name=mRNA_E_fasciculatus_S2_contig848.16607.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=255bp MAEAEAVSAPSPFKPDKGRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDback to top mRNA from alignment at E_fasciculatus_S2_contig848:7357..15996- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig848.16607.1 ID=mRNA_E_fasciculatus_S2_contig848.16607.1|Name=mRNA_E_fasciculatus_S2_contig848.16607.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=8640bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig848:7357..15996- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig848:7357..15996- >mRNA_E_fasciculatus_S2_contig848.16607.1 ID=mRNA_E_fasciculatus_S2_contig848.16607.1|Name=mRNA_E_fasciculatus_S2_contig848.16607.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=765bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig848:7357..15996- (Ectocarpus fasciculatus EfasUO2)back to top |