mRNA_E_fasciculatus_S2_contig8478.16604.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8478.16604.1
Unique NamemRNA_E_fasciculatus_S2_contig8478.16604.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT96_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 2.710e-93
Identity = 148/158 (93.67%), Postives = 150/158 (94.94%), Query Frame = 1
Query:    1 VTAIGCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXX--AAGAQVSRKLHQRLMGQVLDIPWGSRNRRCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDP 468
            + AIGCPVDGPSDRD NRNNVDDLSNWLVNDHKGHFLVWNISDHRS+  XXXXXXXXX  AAG QVSRKLHQRL GQVLDIPWGSRNRRCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDP
Sbjct:   42 LLAIGCPVDGPSDRDANRNNVDDLSNWLVNDHKGHFLVWNISDHRSNXXXXXXXXXXXXXAAGTQVSRKLHQRLQGQVLDIPWGSRNRRCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDP 199          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: FMN (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 7.450e-90
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 1
Query:    1 VTAIGCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXX--AAGAQVSRKLHQRLMGQVLDIPWGSRNRRCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDP 468
            + AIGCPVDGPSDRD NRNN+DDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXX  AAG QVSRKLHQRL GQVLDIPWGSRNRRCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDP
Sbjct:   42 LLAIGCPVDGPSDRDANRNNIDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXXXAAGTQVSRKLHQRLQGQVLDIPWGSRNRRCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKRDP 199          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPS6_SAPPC)

HSP 1 Score: 87.0 bits (214), Expect = 5.990e-17
Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = 1
Query:    1 VTAIGCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWG-SRNRRCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            V   G PVDGP+D+    NN  +L  +L ++H   +L++N+ D                  A +S         Q L+  W      R Y P   H+ R+CY+I  WL LDPEN+A ++C NGK R+ V++ACY  F       + A  + + KR
Sbjct:   41 VLVGGRPVDGPTDKKACVNNAVELKMYLEDEHANRYLIFNLCDDEV---------------AAISP--------QTLEFSWERDGGLRTYTPPSDHIFRICYAIFAWLALDPENVAVIYCHNGKTRSGVVVACYFLFSRLVDDPMTALAQFYQKR 172          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Uncharacterized (protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR71_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.850e-16
Identity = 46/151 (30.46%), Postives = 72/151 (47.68%), Query Frame = 1
Query:   13 GCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWGSRNR-RCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            G  +DGP+D+ +  NN  ++ ++L   H G ++V+N++D  +D                        +  Q LD  W      R Y P   H+ R+CY+I  WL LD EN+A ++C NGK R+ V+ ACY  F       + A  + + KR
Sbjct:   51 GHAIDGPTDKKSCVNNAGEMKSYLDAAHAGKYVVFNLNDESADTAV---------------------ISPQTLDFSWERDGGIRTYTPPSDHIFRICYAIFAWLALDAENVALLYCHNGKTRSGVICACYFLFVRTVDDPMSALAQFYQKR 180          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS83_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.320e-15
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 1
Query:   13 GCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWGSRNR-RCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            G  VDGP+D+ +  NN  ++  +L   H G ++V+N++D  +D              A V       +  Q LD  W      R Y P   H+ R+CY+I  WL LD EN+A ++C NGK R+ V+ ACY  F       + A  + + KR
Sbjct:   52 GRAVDGPTDKMSCVNNATEMKAYLDAAHNGKYVVFNLTDDNAD--------------APV-------ISPQTLDFTWERDGGIRTYTPPADHIFRICYAIFAWLALDAENVALLYCHNGKTRSGVICACYFLFVRTVDDPMSALAQFYQKR 181          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CSC2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.460e-15
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   13 GCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWGSRNR-RCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            G  +DGP+D+ +  NN  ++ ++L   H G ++V+N++   +D                        +  Q LD  W      R Y P   H+ R+CY+I  WL LD EN+A ++C NGK R+ V+ ACY  F       + A  + + KR
Sbjct:   51 GHAIDGPTDKKSCVNNAGEMKSYLDAAHAGKYVVFNLNAESADTAV---------------------ISPQTLDFSWERDGGIRTYTPPSDHIFRICYAIFAWLALDAENVALLYCHNGKTRSGVICACYFLFVRTVDDPMSALAQFYQKR 180          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2R3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.530e-15
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   13 GCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWGSRNR-RCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            G  +DGP+D+ +  NN  ++ ++L   H G ++V+N++   +D                        +  Q LD  W      R Y P   H+ R+CY+I  WL LD EN+A ++C NGK R+ V+ ACY  F       + A  + + KR
Sbjct:   51 GHAIDGPTDKKSCVNNAGEMKSYLDAAHAGKYVVFNLNAESADTAV---------------------ISPQTLDFSWERDGGIRTYTPPSDHIFRICYAIFAWLALDAENVALLYCHNGKTRSGVICACYFLFVRTVDDPMSALAQFYQKR 180          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Formin-homology (2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVV8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.570e-15
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 1
Query:   13 GCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWGSRNR-RCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            G PVDG +D+ +  NN  +L  +L  +H G +L++N+ D  ++              A VS+        Q L+  W      R Y P    + R+CY+I  W  LDPEN+A ++C NGK R+ V+ ACY  F       + A  + + KR
Sbjct:   57 GRPVDGTTDKKSCVNNAAELKAYLEEEHHGRYLLFNLCDDVNE-------------AAIVSK--------QTLEFAWEREGGIRTYTPPSDQIFRICYAIFAWHALDPENVAVLYCHNGKTRSGVVCACYFLFSRIADEPITALAQFYQKR 186          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC67_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.150e-14
Identity = 45/155 (29.03%), Postives = 70/155 (45.16%), Query Frame = 1
Query:    1 VTAIGCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWGSRNR-RCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            +   G  ++GP+D+ +  NN  +L  +L   H G +L++N  D  SD                      + +  Q +D  W      R Y P    + R+CY+I  WL LD EN+A ++C NGK R+ V+ ACY  F       + A  + + KR
Sbjct:   44 LLVAGRAIEGPTDKKSCTNNAVELKTYLDAAHAGKYLLFNFCDENSDA---------------------ETISSQTVDFSWEREGGIRTYTPPSDSIFRICYAIFAWLALDSENVAMLYCHNGKTRSGVISACYFLFARTVDEPMAALAQFYQKR 177          
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Match: Aste57867_4360 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBM7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.910e-14
Identity = 46/151 (30.46%), Postives = 72/151 (47.68%), Query Frame = 1
Query:   13 GCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGXXXXXXXXXAAGAQVSRKLHQRLMGQVLDIPWGSRNR-RCYVPSIRHLLRVCYSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRVWAKR 462
            G  +DGP+D+ +  NN  ++  +L   H G +L++N+ D  +D              A +S         Q +D  W      R Y P   H+ R+CY+I  WL LD +N+A ++C NGK R+ V+ ACY  F       + A  + + KR
Sbjct:   48 GRAIDGPTDKKSCTNNALEMKVYLDAAHAGKYLLFNLCDDNADT-------------AAISP--------QTVDFSWERDGGIRTYTPPSDHIFRICYAIFAWLALDSDNVAMLYCHNGKTRSGVICACYFLFIHTVDDPMSALAQFYQKR 177          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8478.16604.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.710e-9393.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
FMN7.450e-9094.94protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.990e-1732.26protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Uncharacterized3.850e-1630.46protein n=12 Tax=Aphanomyces astaci TaxID=112090 R... [more]
Uncharacterized1.320e-1532.45protein n=2 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized4.460e-1529.80protein n=4 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized4.530e-1529.80protein n=1 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Formin-homology4.570e-1531.792 domain-containing protein n=1 Tax=Thraustotheca ... [more]
Uncharacterized1.150e-1429.03protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Aste57867_43602.910e-1430.46protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8478contigE_fasciculatus_S2_contig8478:5319..6361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score290.0
Seed ortholog evalue6.4e-76
Seed eggNOG ortholog2880.D8LT96
Model size468
KEGG koko:K18080
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
Cds size468
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.4564734-CDS-E_fasciculatus_S2_contig8478:5318..56301696842506.4564734-CDS-E_fasciculatus_S2_contig8478:5318..5630Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8478 5319..5630 +
1696842506.4678462-CDS-E_fasciculatus_S2_contig8478:6205..63611696842506.4678462-CDS-E_fasciculatus_S2_contig8478:6205..6361Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8478 6206..6361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8478.16604.1prot_E_fasciculatus_S2_contig8478.16604.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8478 5319..6361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8478.16604.1

>prot_E_fasciculatus_S2_contig8478.16604.1 ID=prot_E_fasciculatus_S2_contig8478.16604.1|Name=mRNA_E_fasciculatus_S2_contig8478.16604.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
VTAIGCPVDGPSDRDTNRNNVDDLSNWLVNDHKGHFLVWNISDHRSDNGG
GGGGGRQQAAGAQVSRKLHQRLMGQVLDIPWGSRNRRCYVPSIRHLLRVC
YSIKGWLDLDPENMAAVFCANGKARTSVLLACYLRFEGEESTALEAYRRV
WAKRDP
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mRNA from alignment at E_fasciculatus_S2_contig8478:5319..6361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8478.16604.1 ID=mRNA_E_fasciculatus_S2_contig8478.16604.1|Name=mRNA_E_fasciculatus_S2_contig8478.16604.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1043bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8478:5319..6361+ (Ectocarpus fasciculatus EfasUO2)
GTAACAGCGATCGGCTGCCCGGTGGACGGCCCAAGCGACCGAGATACGAA CCGCAACAACGTCGACGACCTCTCCAACTGGCTGGTCAACGACCACAAGG GGCACTTCCTGGTCTGGAACATCTCCGACCACCGCTCGGACAACGGCGGA GGGGGCGGCGGCGGGAGGCAGCAGGCGGCCGGCGCGCAGGTGTCTCGGAA GCTTCACCAGCGGCTGATGGGGCAGGTCCTGGACATCCCGTGGGGCAGCC GGAACCGGCGTTGCTACGTGCCGTCCATCAGACATCTCCTGCGCGTCTGC TACTCGATCAAGGTGAGCGTGGGCAGCTGCCGTAGATGCCGTCCGGATTG TGTGAGAGCTGCAACCTACATACCCGGTGTCAGGGAGGGGCCTTGCTTGA CGCTTGATGAGCTAGCGTGTTTTTTTTTTTTGCTGGTTCGGTTGGCAGCA CAGCGTAGTGGCACGGCTGCCTTCAGATCGTGAGCGGCGGCATTGCTCGC GAGCGACTTCAGCCAAGTGCCTCTATTTTTTCCCCGTCTCACCCGCCCAG AAACCTTTGCTCCTACGGTACTTACTGCCTCTGCCTTTCCGGCGTGTTTT GGCGCTTTCCTCCTGTCAGGCTGGCGTGGTAACCCCGAGGTTGCTCGGCG TGAACTCGCTTCGCGCAGCACTGGTTGGTTGACAATCAACCCGGCCGCTG AATAAAAAAAGACACAAATCTCTTCTGCTGTGTCCACCCACTCCCTCCAC ACTCACCCCTGTTGTAGGGTGCGAGGCCAATGGTCTGTAACGACTACAGC ATGCGTTGACATGAGAGTGAGTACCCCCCGTCCCCGTCCCCCCGCTCGAA AACTCAATCTCCGGGGCCGCCACCGTTATTGCGACAGGGCTGGCTCGACC TGGATCCGGAGAACATGGCTGCCGTGTTCTGCGCGAACGGAAAGGCAAGG ACGTCGGTGCTCCTGGCGTGCTACCTGCGGTTCGAGGGGGAGGAGTCCAC CGCCCTGGAGGCGTATCGTCGGGTGTGGGCGAAACGAGACCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8478:5319..6361+

>mRNA_E_fasciculatus_S2_contig8478.16604.1 ID=mRNA_E_fasciculatus_S2_contig8478.16604.1|Name=mRNA_E_fasciculatus_S2_contig8478.16604.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8478:5319..6361+ (Ectocarpus fasciculatus EfasUO2)
GTAACAGCGATCGGCTGCCCGGTGGACGGCCCAAGCGACCGAGATACGAA
CCGCAACAACGTCGACGACCTCTCCAACTGGCTGGTCAACGACCACAAGG
GGCACTTCCTGGTCTGGAACATCTCCGACCACCGCTCGGACAACGGCGGA
GGGGGCGGCGGCGGGAGGCAGCAGGCGGCCGGCGCGCAGGTGTCTCGGAA
GCTTCACCAGCGGCTGATGGGGCAGGTCCTGGACATCCCGTGGGGCAGCC
GGAACCGGCGTTGCTACGTGCCGTCCATCAGACATCTCCTGCGCGTCTGC
TACTCGATCAAGGGCTGGCTCGACCTGGATCCGGAGAACATGGCTGCCGT
GTTCTGCGCGAACGGAAAGGCAAGGACGTCGGTGCTCCTGGCGTGCTACC
TGCGGTTCGAGGGGGAGGAGTCCACCGCCCTGGAGGCGTATCGTCGGGTG
TGGGCGAAACGAGACCCG
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