mRNA_E_fasciculatus_S2_contig8471.16600.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8471.16600.1
Unique NamemRNA_E_fasciculatus_S2_contig8471.16600.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226F027_FOLCA)

HSP 1 Score: 110 bits (276), Expect = 4.140e-26
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 333
            E++NVANF GH G + ++AFSENGYY+A+A ED   +LWDLRKL NF  + + D  +   +AFD +G+YLA  G    +V+  K W E+A Y+ + G+ TGV+FG++ASF+ 
Sbjct:  373 EQSNVANFPGHNGRIISIAFSENGYYLATAAEDACVKLWDLRKLKNFKTIEMADNYSITDLAFDQTGTYLAVSGSD-VRVYGCKLWNEIAVYNDHTGTATGVRFGQNASFIA 483          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4X9I8_ERPCA)

HSP 1 Score: 102 bits (253), Expect = 6.400e-23
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 333
            E+ NVANF GH G + ++AFSENGYY+A++ +D   +LWDLRKL NF  + + D     S+ FD SG+YLA  G    +++  K W E+  +  + G  TGV FG+ A FL 
Sbjct:  368 ERTNVANFPGHSGPITSIAFSENGYYLATSADDSSVKLWDLRKLKNFKTIQLDDNYEVKSLVFDQSGTYLAVAGSDI-RIYVCKQWSEVLNFTEHSGITTGVAFGQHAQFLT 478          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A851Y2P9_EOLRO)

HSP 1 Score: 100 bits (248), Expect = 1.070e-22
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLVRQTGHQR 354
            E+ NVANF GH G + ++AFSENGYY+A+A +D   +LWDLRKL NF  L + +     S+ FD SG+YLA GG    +++  K W E+  +  + G  TGV FG  A F+   TG  R
Sbjct:  233 ERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLENNFEVKSLIFDQSGTYLALGGTD-VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIA-STGMDR 349          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=3 Tax=Euarchontoglires TaxID=314146 RepID=A0A8I6AD08_RAT)

HSP 1 Score: 100 bits (249), Expect = 2.350e-22
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLVRQTGHQR 354
            E+ NVANF GH G + ++AFSENGYY+A+A +D   +LWDLRKL NF  L + +     S+ FD SG+YLA GG    +++  K W E+  +  + G  TGV FG  A F+   TG  R
Sbjct:  374 ERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTD-VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIA-STGMDR 490          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P8B5_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 6.160e-21
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   10 NVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 333
            N+A F GH G V ALAFSENGY +A+A +D   +LWDLR L N   LT+ D    H++ FD+   YLA GG    ++F  K W EL   +   G + GVK+G  A +LV
Sbjct:  405 NIATFPGHTGKVGALAFSENGYMLATASQDNLVKLWDLRNLVNTKTLTLADDYKVHTLDFDYHAQYLAVGGTD-VRIFKAKQWTELVKLEDNSGEIMGVKWGDMAGYLV 512          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HY70_KLENI)

HSP 1 Score: 94.0 bits (232), Expect = 5.500e-20
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDGAA--HSVAFDFSGSYLAAGGKKCTKVFAVKT----WGELATYDGYGGS--VTGVKFGKSASFLV 333
            +ANVA F+GH G VNA++FSENGY++A+A  DG  +LWDLRKL NF      D     ++V FD SGSYLAAGG    +++AV T    W  + T+    G+  +   KFGK AS+L 
Sbjct:  386 QANVAKFEGHSGPVNAISFSENGYFLATAARDG-VKLWDLRKLKNFRTFAPWDADTDCNTVEFDHSGSYLAAGGAD-VRIYAVGTVKQEWNTVKTFPDLSGTSKILNAKFGKDASYLA 501          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LGX9_CHABU)

HSP 1 Score: 94.0 bits (232), Expect = 5.980e-20
Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    4 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG--AAHSVAFDFSGSYLAAGGK--KCTKVFAVK-TWGELATYDGYGGS--VTGVKFGKSASFLVRQTGHQRVR 360
            + NVA F+GH G V++++FSENGY++A+A +DG  +LWDLRKL NF +L+  DG  A ++V FDFSGSYLA  G   +  +V +VK  W  + T++ + G+  +T V+FG  A ++   T  + +R
Sbjct:  457 QTNVATFQGHTGAVSSVSFSENGYFLATAAQDG-VKLWDLRKLKNFRSLSPYDGTIATNTVEFDFSGSYLAMAGSDIRIHQVQSVKHEWPIIKTFNDFSGTGTITSVRFGPDAKYMAITTMDKNLR 581          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZP2_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.000e-19
Identity = 59/119 (49.58%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   13 VANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLR--KLTNFDNLTIGDGAA--HSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLVRQTGHQRV 357
            VA+F GH   V  LAFSENGYYMAS   D   RLWDLR  K+ NF      DG    HSV FD SG+YLA GG+  T+V+ VK W EL   + + G+VT V FG  A  +V  +  +RV
Sbjct:  389 VADFTGHTDAVTDLAFSENGYYMASTCNDNTVRLWDLRMKKILNFKVFEY-DGKINPHSVQFDRSGTYLAVGGQD-TRVYVVKHWDELCRLEDHTGAVTKVAFGPDAGSIVSASMDRRV 505          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HIV3_9PLAT)

HSP 1 Score: 91.7 bits (226), Expect = 1.520e-19
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDGA-----------AHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 333
            E+  + NF+ H   + ALAFSENGYY+A+A ED   RLWDLRKL NF  L +G              A ++AFD SG+YLAAGG    +++  K + EL   D +  +VTG++FG +A  +V
Sbjct:    8 EQKFLTNFEQHTAPLTALAFSENGYYLATAAEDSTVRLWDLRKLKNFKVLQLGGSESGQPSGPASSHARALAFDHSGTYLAAGGGDI-RLYHTKQFNELCMLDNHTAAVTGLRFGTNARSIV 128          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Match: Pre-mRNA-processing (factor 19 n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9SC45_PHYPA)

HSP 1 Score: 90.1 bits (222), Expect = 1.270e-18
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    4 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG--AAHSVAFDFSGSYLAAGGK--KCTKVFAVKT-WGELATYDGYGGS--VTGVKFGKSASFLVRQTGHQRVR 360
            +ANVA F+GH G V  ++FSENGY++A+AG+DG  +LWDLRKL NF +    D     ++V FD+SGSYLA GG   +  +V +VK  W  +  +    G+  VT ++FG  AS+L   +  + +R
Sbjct:  387 QANVAKFEGHTGPVTDISFSENGYFLATAGQDG-VKLWDLRKLKNFRSFAPYDNNTPTNTVEFDYSGSYLAVGGSDIRVYQVASVKQEWNTIKIFPDLSGTGKVTSIRFGPDASYLAVGSSDRNLR 511          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Pre-mRNA-processing4.140e-2648.21factor 19 n=1 Tax=Folsomia candida TaxID=158441 Re... [more]
Pre-mRNA-processing6.400e-2344.64factor 19 n=4 Tax=Polypteridae TaxID=8289 RepID=A0... [more]
Pre-mRNA-processing1.070e-2245.38factor 19 (Fragment) n=3 Tax=Neognathae TaxID=8825... [more]
Pre-mRNA-processing2.350e-2245.38factor 19 n=3 Tax=Euarchontoglires TaxID=314146 Re... [more]
Pre-mRNA-processing6.160e-2145.87factor 19 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2... [more]
Pre-mRNA-processing5.500e-2047.46factor 19 n=1 Tax=Klebsormidium nitens TaxID=10523... [more]
Pre-mRNA-processing5.980e-2043.65factor 19 n=1 Tax=Chara braunii TaxID=69332 RepID=... [more]
Pre-mRNA-processing1.000e-1949.58factor 19 n=1 Tax=Sphaeroforma arctica JP610 TaxID... [more]
Pre-mRNA-processing1.520e-1943.44factor 19 n=1 Tax=Macrostomum lignano TaxID=282301... [more]
Pre-mRNA-processing1.270e-1842.86factor 19 n=3 Tax=Physcomitrium patens TaxID=3218 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8471contigE_fasciculatus_S2_contig8471:5712..6551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeNematoda
Stop1
Start0
Seed ortholog score110.2
Seed ortholog evalue7.1e-22
Seed eggNOG ortholog6334.EFV58577
Model size363
KEGG koko:K10599
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.Prp19/Pso4-like
EggNOG OGs38CRU@33154,3BF9F@33208,3CV5N@33213,40B21@6231,KOG0289@1,KOG0289@2759,KOG3544@1,KOG3544@2759
EC2.3.2.27
Cds size363
COG Functional cat.S
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.2098625-CDS-E_fasciculatus_S2_contig8471:5711..58401696842506.2098625-CDS-E_fasciculatus_S2_contig8471:5711..5840Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8471 5712..5840 -
1696842506.2211814-CDS-E_fasciculatus_S2_contig8471:6317..65511696842506.2211814-CDS-E_fasciculatus_S2_contig8471:6317..6551Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8471 6318..6551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8471.16600.1prot_E_fasciculatus_S2_contig8471.16600.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8471 5712..6551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8471.16600.1

>prot_E_fasciculatus_S2_contig8471.16600.1 ID=prot_E_fasciculatus_S2_contig8471.16600.1|Name=mRNA_E_fasciculatus_S2_contig8471.16600.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNL
TIGDGAAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTG
VKFGKSASFLVRQTGHQRVR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8471:5712..6551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8471.16600.1 ID=mRNA_E_fasciculatus_S2_contig8471.16600.1|Name=mRNA_E_fasciculatus_S2_contig8471.16600.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=840bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8471:5712..6551- (Ectocarpus fasciculatus EfasUO2)
GAAAAGGCCAACGTGGCCAACTTCAAGGGCCACGAGGGAGGGGTGAACGC TCTGGCCTTCAGCGAGAACGGTTACTACATGGCCTCGGCGGGCGAAGACG GCTACGCGCGCCTGTGGGACCTCCGCAAGCTCACCAACTTCGACAACCTC ACCATTGGCGACGGGGCGGCGCACTCGGTGGCGTTCGACTTCTCGGGGTC CTACCTCGCGGCGGGGGGGAAGAAGTGCACTAAGGTGGGCCGGGGGGGGG GGGGGGGGGGTTGTCGACGCGCGATCTGTGTGAAAGTGGTCGGCCGCATG TTGATTGAGCAGGATGTTGGGGTGGCGTGCGTGGTTAGAAAAATGCACAT ATTTTTCGCTGGGCGGGATGGGTATTTTTTGAGTTTGTTTTCTTGTCTGA TGGTTGTGGATGGATGCCGACGTGATAAACAAGAGTATTTCTCTCTTTTT TTTCTTTTTTTTTTGCAGATGCCGCAGCAGCTGTTTCTGTGCAAAGCATA GGCACACGACGCATGTTCACGTCTGATCATTCGTTGATTTTTTCCCTCGT CGTACGTTGTGGCGACCGACTCTCTGCTGGTCTTCTTACAATAGCGCTCC GAAAGCCTCACACACACCCACTTCCAGCTATTTAAGACAATCACATTAAA GTGTTCCAGTGTACCTCACACCTTGTCTTAATATTCGTCGTCGTGCCATT GAATGTTCCAGGTGTTCGCGGTTAAGACTTGGGGAGAGCTTGCGACCTAC GACGGCTACGGTGGGTCGGTGACGGGCGTCAAGTTCGGCAAGAGCGCGAG CTTCCTGGTGAGACAGACTGGACACCAACGTGTTCGATAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8471:5712..6551-

>mRNA_E_fasciculatus_S2_contig8471.16600.1 ID=mRNA_E_fasciculatus_S2_contig8471.16600.1|Name=mRNA_E_fasciculatus_S2_contig8471.16600.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8471:5712..6551- (Ectocarpus fasciculatus EfasUO2)
GAAAAGGCCAACGTGGCCAACTTCAAGGGCCACGAGGGAGGGGTGAACGC
TCTGGCCTTCAGCGAGAACGGTTACTACATGGCCTCGGCGGGCGAAGACG
GCTACGCGCGCCTGTGGGACCTCCGCAAGCTCACCAACTTCGACAACCTC
ACCATTGGCGACGGGGCGGCGCACTCGGTGGCGTTCGACTTCTCGGGGTC
CTACCTCGCGGCGGGGGGGAAGAAGTGCACTAAGGTGTTCGCGGTTAAGA
CTTGGGGAGAGCTTGCGACCTACGACGGCTACGGTGGGTCGGTGACGGGC
GTCAAGTTCGGCAAGAGCGCGAGCTTCCTGGTGAGACAGACTGGACACCA
ACGTGTTCGATAA
back to top