mRNA_E_fasciculatus_S2_contig8471.16599.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8471.16599.1
Unique NamemRNA_E_fasciculatus_S2_contig8471.16599.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8471.16599.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8471contigE_fasciculatus_S2_contig8471:1882..3227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons3
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.133287-CDS-E_fasciculatus_S2_contig8471:1881..19211696842506.133287-CDS-E_fasciculatus_S2_contig8471:1881..1921Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8471 1882..1921 +
1696842506.1547585-CDS-E_fasciculatus_S2_contig8471:2299..24171696842506.1547585-CDS-E_fasciculatus_S2_contig8471:2299..2417Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8471 2300..2417 +
1696842506.167811-CDS-E_fasciculatus_S2_contig8471:2942..31081696842506.167811-CDS-E_fasciculatus_S2_contig8471:2942..3108Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8471 2943..3108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.179156-UTR-E_fasciculatus_S2_contig8471:3108..32271696842506.179156-UTR-E_fasciculatus_S2_contig8471:3108..3227Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8471 3109..3227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8471.16599.1prot_E_fasciculatus_S2_contig8471.16599.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8471 1882..3108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8471.16599.1

>prot_E_fasciculatus_S2_contig8471.16599.1 ID=prot_E_fasciculatus_S2_contig8471.16599.1|Name=mRNA_E_fasciculatus_S2_contig8471.16599.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=108bp
GGGAGAGDSAAGGERFSRPKSAAAKKKSSRPKSARRRRSSQEEEGIEFKD
DDETSPTPPNTSPTSKRACEAAARATMLKLLVLLIHGPDRCIVTCWGYMP
GMTRVYS*
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mRNA from alignment at E_fasciculatus_S2_contig8471:1882..3227+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8471.16599.1 ID=mRNA_E_fasciculatus_S2_contig8471.16599.1|Name=mRNA_E_fasciculatus_S2_contig8471.16599.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1346bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8471:1882..3227+ (Ectocarpus fasciculatus EfasUO2)
GGGGGTGGAGCCGGGGCCGGCGATTCTGCAGCTGGGGGAGGTGAGCCGGG
CTTTCTGTTCTAACGGATGTTTTCCCCGTCCAAGAATCCATTTGCTTTCG
GGGACCAAAGAGCAATCTCGAATCCGCGGCAAATGGTTAGTCTGGACAAC
GATCCGAGAGCACCTGAGGCACGCGTGCCGGGCTCTTCGTGATGCGGTAC
ACAACAAACACCTTTTTCTGTCAAAGAGAATGATGTGTTGAACGATGCAC
CCCCGGCGCCGCCCAGTCTTTGTGTGTTGCCCCTGTTCTGTCCCCGTGTC
CTCCCTCTCTCGCCCCGGCGCCCGCCCTCCGTCTCTCATGAACGTCACAA
GCAACAAGCAACGAATTTCCTTCCCTGCTCTTGTTTCTCTCTCTCTCTCT
CTCTCATCTTCCTCACAGAACGGTTTTCGAGGCCGAAAAGTGCCGCGGCG
AAAAAGAAATCGTCTCGGCCTAAGTCGGCCAGACGAAGGCGGTCGTCGCA
GGAAGAAGAGGGCATCGAATTCAAGGACGACGATGAGTGAGTTTTTGTGT
TGTGTTTCGGCAAGAGTACCCCCCGCGCGGTTTCGTGGCGGGTGAAAGTG
CTTTGACTACACATGCATGCCTACTTATAGGCGCCTCGCTTCGCATGTGT
CAACCCCGCACAACCTTGTCAGCTGTTTGCGCGTACGGCGGGGAGGGACA
ATCCTTTCTTTCCAAAGGCGTACGCTAATATCAAATTACGACATTCGGCA
ACGTCGTTGTTCCTACGCCTCGTAGAACCATGTCCAACGCTGGCCTGCTC
TTCACACGGCTGTCGAATCTTCATTTTGTAGATGATCGCACATGCTCGAT
CGTTCTTAGCTGAAAACAGCCGGCATCTACATATCTATAAGTAGGTAGGG
CTGCGGGGGGTGGAAGGTCTCAGGGCAGTCGATAGCAACTGCCTGAAAGT
GGTGATGGGCATATTTCTAGCTCACATTCCGCCAATACGTCCTAGTCTGA
CGATCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCAACCTCCCCCACACCCCCCAACACATCCCCCACCTCAAA
ACGCGCTTGCGAAGCTGCTGCACGTGCTACCATGCTGAAGCTGCTAGTGC
TGCTTATACATGGTCCAGATAGATGCATCGTTACTTGTTGGGGCTATATG
CCGGGTATGACTCGTGTATACAGCTGAGGATGCGATTTTTATGGCCAGCT
AGCCTTGCGCGCGCGCGGGGGGGTGATCGCTATTGGTGTGGTGTCGTACC
TGTCGGTCGCTAGGGTGTGTGTACGTGTCGGTTGTGCAAGAGTGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8471:1882..3227+

>mRNA_E_fasciculatus_S2_contig8471.16599.1 ID=mRNA_E_fasciculatus_S2_contig8471.16599.1|Name=mRNA_E_fasciculatus_S2_contig8471.16599.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=324bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8471:1882..3227+ (Ectocarpus fasciculatus EfasUO2)
GGGGGTGGAGCCGGGGCCGGCGATTCTGCAGCTGGGGGAGAACGGTTTTC
GAGGCCGAAAAGTGCCGCGGCGAAAAAGAAATCGTCTCGGCCTAAGTCGG
CCAGACGAAGGCGGTCGTCGCAGGAAGAAGAGGGCATCGAATTCAAGGAC
GACGATGAAACCTCCCCCACACCCCCCAACACATCCCCCACCTCAAAACG
CGCTTGCGAAGCTGCTGCACGTGCTACCATGCTGAAGCTGCTAGTGCTGC
TTATACATGGTCCAGATAGATGCATCGTTACTTGTTGGGGCTATATGCCG
GGTATGACTCGTGTATACAGCTGA
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