mRNA_E_fasciculatus_S2_contig8462.16592.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8462.16592.1
Unique NamemRNA_E_fasciculatus_S2_contig8462.16592.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8462.16592.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G809_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 4.960e-82
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 1 
Query:    1 MPPKKNYSYTNLADTPQHGEIIESSYLLAEKGPKSIWTKVLEMVVLVATIGGCAYLVLFLFHHGNHHDSTTAKDSASHPHPPVGASSSTSQDPASCNSNSKCSELGLDGFCCPTAKGGDYLACCFDN 381
            MPPKKNYSYTNLADTPQHGEIIESSYLLAEKGPKSIWTKVLEMVVLVATIGGCAYLV+FLFHH NHHDS TAKDSASHPHPPVGASSSTSQDPASCNSNSKC+EL L+GFCCPTAKG DYLACCF+N
Sbjct:    1 MPPKKNYSYTNLADTPQHGEIIESSYLLAEKGPKSIWTKVLEMVVLVATIGGCAYLVVFLFHHANHHDSATAKDSASHPHPPVGASSSTSQDPASCNSNSKCAELELNGFCCPTAKG-DYLACCFEN 126
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8462.16592.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.960e-8293.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8462contigE_fasciculatus_S2_contig8462:3562..4683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size384
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009730.1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842505.3725011-CDS-E_fasciculatus_S2_contig8462:3561..36291696842505.3725011-CDS-E_fasciculatus_S2_contig8462:3561..3629Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 3562..3629 -
1696842505.3839376-CDS-E_fasciculatus_S2_contig8462:4009..42741696842505.3839376-CDS-E_fasciculatus_S2_contig8462:4009..4274Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 4010..4274 -
1696842505.3937225-CDS-E_fasciculatus_S2_contig8462:4632..46831696842505.3937225-CDS-E_fasciculatus_S2_contig8462:4632..4683Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 4633..4683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8462.16592.1prot_E_fasciculatus_S2_contig8462.16592.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8462 3562..4683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8462.16592.1

>prot_E_fasciculatus_S2_contig8462.16592.1 ID=prot_E_fasciculatus_S2_contig8462.16592.1|Name=mRNA_E_fasciculatus_S2_contig8462.16592.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=128bp
MPPKKNYSYTNLADTPQHGEIIESSYLLAEKGPKSIWTKVLEMVVLVATI
GGCAYLVLFLFHHGNHHDSTTAKDSASHPHPPVGASSSTSQDPASCNSNS
KCSELGLDGFCCPTAKGGDYLACCFDN*
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mRNA from alignment at E_fasciculatus_S2_contig8462:3562..4683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8462.16592.1 ID=mRNA_E_fasciculatus_S2_contig8462.16592.1|Name=mRNA_E_fasciculatus_S2_contig8462.16592.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1122bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:3562..4683- (Ectocarpus fasciculatus EfasUO2)
ATGCCGCCGAAGAAAAACTACAGCTACACCAACTTGGCAGATACACCGCA
GGTGAGCCCCCTCTCCTTTCGTTGCACGTTTTGGTGTTATCCTTTCGAAT
CTCCTGCTGCCTGTAAAAGCTTTCATCCAATTCCGCAATCGCGATTTGTC
GTGTTCTTGCTCACGGCGTTCCCACAGCAGCGATACAGCATTGCGTGCAA
TAAAAGGCCCTAGTGTTCCATGCGTGCTTGCCTGTGGACTGCTTACCCTG
TAAGAATTTTGACTCCTCAACCCTATTCATGTTTACCAACGTGATATTGT
ATTTACAGTATGTGCAAAGTCAAGTTCCACCGCGATGGATCCCAGGATGG
ATAGATACGTCTCAACATGTCCTCGGTCCCATCCTTCTGTCCTCTCTTTC
AAATCTCAGCATGGGGAGATCATCGAGTCCTCTTACCTGCTGGCAGAAAA
GGGCCCGAAGTCAATTTGGACCAAAGTGCTGGAAATGGTGGTGCTCGTGG
CCACCATCGGTGGATGCGCGTACCTGGTGCTGTTCCTGTTCCACCACGGC
AACCATCACGACTCCACGACAGCGAAGGACTCGGCTTCGCACCCGCACCC
TCCCGTGGGGGCTAGCTCTTCCACATCGCAAGACCCTGCGTCTTGCAACA
GCAACTCCAAGTGCTCAGAGCTAGGTAAGCGAGGCGATTTGCTGTTTTCC
CAACATGTTGCCACAGCAACTCCCAAGTGCTCGGAGCTTGTAGGTAGGCG
AGACGATTTGCTGCTCTCCCAACTGTTTGATGAAGAGTTGTTACTCCTCT
TTACGGGTTCACATGCTAAGTTGGGTCGGGTCGTTCGGCAAGCAAAGGTC
GCCTGCTCTCGCTCACGCACGTCGAGCGTGTGTGCGCTCGTCTCCTCTCG
AGCATAGAGTGGCCAAGTATGTGTCTGTCGGCAGGTTGCATCTTTCAAAA
TCGAGCCTTTTCTGCCGGCAATTTGTATCTTCACCCATCTGCCTGCCTCT
CTCGCTGTTGCGCCTTCCCTCGCTGCTTCGCTTCGTATTCCTGCGACCGA
GAAGGGTTGGATGGCTTTTGTTGCCCTACTGCGAAGGGTGGTGACTATCT
GGCGTGCTGCTTCGATAACTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8462:3562..4683-

>mRNA_E_fasciculatus_S2_contig8462.16592.1 ID=mRNA_E_fasciculatus_S2_contig8462.16592.1|Name=mRNA_E_fasciculatus_S2_contig8462.16592.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=384bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:3562..4683- (Ectocarpus fasciculatus EfasUO2)
ATGCCGCCGAAGAAAAACTACAGCTACACCAACTTGGCAGATACACCGCA
GCATGGGGAGATCATCGAGTCCTCTTACCTGCTGGCAGAAAAGGGCCCGA
AGTCAATTTGGACCAAAGTGCTGGAAATGGTGGTGCTCGTGGCCACCATC
GGTGGATGCGCGTACCTGGTGCTGTTCCTGTTCCACCACGGCAACCATCA
CGACTCCACGACAGCGAAGGACTCGGCTTCGCACCCGCACCCTCCCGTGG
GGGCTAGCTCTTCCACATCGCAAGACCCTGCGTCTTGCAACAGCAACTCC
AAGTGCTCAGAGCTAGGGTTGGATGGCTTTTGTTGCCCTACTGCGAAGGG
TGGTGACTATCTGGCGTGCTGCTTCGATAACTAA
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