mRNA_E_fasciculatus_S2_contig8462.16591.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8462.16591.1
Unique NamemRNA_E_fasciculatus_S2_contig8462.16591.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G810_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 6.480e-85
Identity = 127/150 (84.67%), Postives = 132/150 (88.00%), Query Frame = 1
Query:    1 MFCDPFPIVYTTLAAKYLPKLDAKSSGG---SKGCCSDASCND-EGDVKTVQSLQHWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDAFDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVEQ 438
            M C PF +VYT   AKYLP LDAK+SGG   SKGCCSDASCND  GDVKTVQSLQHWKDLKRTEPLL+VDFTASWCKPCRAMAP+FEGLAKENKGAAAVF KVDID LP+ FDGTSIPAFYV KNGVKVDSVTGSGE KLRKLVADHV Q
Sbjct:    1 MLCHPFLLVYTARTAKYLPYLDAKASGGGSYSKGCCSDASCNDGTGDVKTVQSLQHWKDLKRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVKVDSVTGSGESKLRKLVADHVGQ 150          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: thioredoxin (H2-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA23A)

HSP 1 Score: 87.8 bits (216), Expect = 2.940e-19
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   91 GCCSDASCNDEGD-VKTVQSLQHWK----DLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
            G  S++    E D V    S   W+    ++K +  LL++DFTASWC PC+ MAPVF+GLA+  K     FVK+D+D +PD    F   ++P F ++K G +VD V G+ +D+L + ++ H
Sbjct:   11 GAASESETGSESDRVSKFSSSARWQLYFNEIKESSKLLVIDFTASWCGPCKMMAPVFQGLAE--KFTDVEFVKIDVDEVPDVAREFGVQAMPTFVLVKRGREVDRVVGAKKDELERKISHH 129          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH67_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.350e-19
Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  130 VKTVQSLQHWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDY---LPDAFDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
            +  V+S + W++L+     L+V FTA+WC PC+ +APVF GLA+ + G  A FVKVDID    + D  D  ++P F+V ++G ++  + G+   +L +LV +H
Sbjct:   57 IVVVKSEEQWEELRSAPGTLVVQFTATWCGPCKRVAPVFAGLARAHSGPGAAFVKVDIDAAAAVADECDVAAVPQFHVFRDGKRIAKMVGAKPQQLEQLVKEH 159          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QF43_9MAGN)

HSP 1 Score: 86.3 bits (212), Expect = 8.270e-19
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  130 VKTVQSLQHWKDL----KRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
            V+   S   WK+L    K +  L+++DFTA+WC PCR MAP+F  LA+  K    VFVK+D+D L D    F+  ++P F  +K GV VD + G+G+++L K +  H
Sbjct:    5 VQAFHSSDEWKNLFTSLKDSSQLIVIDFTATWCPPCRMMAPIFADLAE--KFTEVVFVKIDVDELKDVCEEFEVEAMPTFIFIKQGVVVDKIVGAGKNELEKKIELH 109          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1L605_SOYBN)

HSP 1 Score: 85.9 bits (211), Expect = 1.650e-18
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  154 HWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVE 435
            H+ ++K T  L+++DFTASWC PCR +APVF  +AK  K + A FVK+D+D LPD    F   ++P F + K G +VD V G+ +D+L+  +  H +
Sbjct:   37 HFNEVKETSKLVVIDFTASWCGPCRFIAPVFNEMAK--KFSNAEFVKIDVDELPDVAKDFKVEAMPTFVLCKKGKEVDRVVGARKDELQNKIQKHYQ 131          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QF28_9MAGN)

HSP 1 Score: 85.1 bits (209), Expect = 3.030e-18
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  100 SDASCNDEGDVKTVQSLQ-------HWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
            S +S  D  +   VQ++        H+  LK +  L+++DFTA+WC PC+ MAP+F  LA+  K    VFVK+D+D L D    F   ++P F +LK G +VD V G+ +D+L K +  H
Sbjct:    6 SSSSTGDSSESSRVQAIHSSGEWRNHFNSLKNSSQLIVIDFTATWCGPCKMMAPIFADLAE--KFTDVVFVKIDVDELMDVSREFGVQAMPTFVLLKQGKEVDKVVGAKKDELEKKIEMH 123          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JG41_PAPSO)

HSP 1 Score: 85.1 bits (209), Expect = 3.120e-18
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  109 SCNDEGDVKTVQSLQHWKD----LKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVE 435
            S ++   V+   S   WK+    +K +  L+++DFTA+WC PC+ MAPVF  L++    A  +FVK+D+D LPD    F   ++P F +LK G +VD + G+ +D+L + VA H +
Sbjct:   15 STSESSRVQAFHSSSEWKNHFNSVKGSNQLMVIDFTATWCGPCKFMAPVFSELSERFPDA--IFVKIDVDELPDVSREFGVQAMPTFILLKQGKEVDKIVGAKKDELERKVALHCQ 128          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CUS7_OPUST)

HSP 1 Score: 84.7 bits (208), Expect = 3.860e-18
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  118 DEGDVKTVQSLQHWKDL----KRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDY---LPDAFDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVEQ 438
            +EG V T QS  HWK+L    K  + L++VDFTASWC PCR MAP+    AK  K    VFVKVD+D    + + +   ++P+F  LK+G +++ + G+ +D L   +  H  +
Sbjct:    9 EEGQVITCQSTDHWKELLDKAKEAKKLVVVDFTASWCGPCRFMAPILADFAK--KFPHVVFVKVDVDEQKAIAEEWKVEAMPSFVFLKDGQEIERIVGANKDGLLAALTKHASE 120          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AJL9_BRABE)

HSP 1 Score: 84.0 bits (206), Expect = 4.630e-18
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  178 EPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDAFDGTSI---PAFYVLKNGVKVDSVTGSGEDKLRKLVA 423
            + L++VDFTASWC PCR +APVFE LA+EN     +FVKVD+D   +      I   P F   KNG KV+ + G+ EDKLR++VA
Sbjct:   20 DKLIVVDFTASWCGPCRMIAPVFEKLAEENPDV--IFVKVDVDANDETAGACGISAMPTFQCYKNGAKVEEMCGASEDKLREMVA 102          
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP36_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 4.630e-18
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  130 VKTVQSLQHWKD-LKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDAFDGTSI---PAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
            VK VQSL+ +   L+ T+ L++VDF A WC PCR +APV E L +E K    VF+KVD+D LPD      +   P F   K G KVD +TG+ E  LR  V  H
Sbjct:    2 VKEVQSLEEFDQILEGTDKLIVVDFFAVWCGPCRYIAPVMERLQEEYKDTV-VFIKVDVDKLPDLAQRCGVAAMPTFIFYKGGKKVDDLTGANEQVLRDKVRKH 104          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Thioredoxin6.480e-8584.67domain-containing protein n=1 Tax=Ectocarpus silic... [more]
thioredoxin2.940e-1938.84H2-like isoform X1 n=2 Tax=Tarenaya hassleriana Ta... [more]
Thioredoxin-like4.350e-1938.83protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Thioredoxin8.270e-1941.12n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q... [more]
Thioredoxin1.650e-1843.30domain-containing protein n=2 Tax=Glycine subgen. ... [more]
Thioredoxin3.030e-1838.33n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q... [more]
Thioredoxin3.120e-1837.93domain-containing protein n=2 Tax=Papaver somnifer... [more]
Thioredoxin3.860e-1839.47domain-containing protein n=3 Tax=Opuntia streptac... [more]
Thioredoxin4.630e-1850.59n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AJL9_... [more]
Thioredoxin4.630e-1846.15n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=269... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8462contigE_fasciculatus_S2_contig8462:811..2088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score257.7
Seed ortholog evalue3.7e-66
Seed eggNOG ortholog2880.D7G810
Model size492
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003756,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007267,GO:0008150,GO:0008152,GO:0008283,GO:0009314,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016853,GO:0016860,GO:0016864,GO:0019220,GO:0019222,GO:0019725,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032386,GO:0032879,GO:0032880,GO:0033135,GO:0033138,GO:0033157,GO:0033158,GO:0033554,GO:0033674,GO:0034599,GO:0042221,GO:0042306,GO:0042325,GO:0042327,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043388,GO:0043549,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045859,GO:0045860,GO:0045937,GO:0046822,GO:0047134,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051223,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051896,GO:0051897,GO:0055114,GO:0060255,GO:0060341,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0097237,GO:0098754,GO:0098869,GO:0140096,GO:1900180,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1902531,GO:1902533,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903827,GO:1904589,GO:1990748,GO:2001023,GO:2001024,GO:2001038,GO:2001039
Exons3
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-06_009740.1
Cds size492
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842505.3100228-CDS-E_fasciculatus_S2_contig8462:810..9831696842505.3100228-CDS-E_fasciculatus_S2_contig8462:810..983Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 811..983 +
1696842505.332117-CDS-E_fasciculatus_S2_contig8462:1376..15541696842505.332117-CDS-E_fasciculatus_S2_contig8462:1376..1554Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 1377..1554 +
1696842505.3425648-CDS-E_fasciculatus_S2_contig8462:1947..20881696842505.3425648-CDS-E_fasciculatus_S2_contig8462:1947..2088Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 1948..2088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8462.16591.1prot_E_fasciculatus_S2_contig8462.16591.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8462 811..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8462.16591.1

>prot_E_fasciculatus_S2_contig8462.16591.1 ID=prot_E_fasciculatus_S2_contig8462.16591.1|Name=mRNA_E_fasciculatus_S2_contig8462.16591.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=164bp
MFCDPFPIVYTTLAAKYLPKLDAKSSGGSKGCCSDASCNDEGDVKTVQSL
QHWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVD
IDYLPDAFDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVEQQQDN
GGGASPPDDKKSQ*
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mRNA from alignment at E_fasciculatus_S2_contig8462:811..2088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8462.16591.1 ID=mRNA_E_fasciculatus_S2_contig8462.16591.1|Name=mRNA_E_fasciculatus_S2_contig8462.16591.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1278bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:811..2088+ (Ectocarpus fasciculatus EfasUO2)
ATGTTCTGTGATCCGTTTCCTATCGTCTACACCACCCTGGCAGCCAAGTA TTTACCCAAGCTGGATGCCAAATCTAGCGGAGGCTCCAAGGGATGTTGCT CGGACGCCAGCTGCAACGACGAAGGCGACGTGAAGACGGTCCAGTCCCTG CAACATTGGAAGGACTTGAAACGGTGAGAGGGACGCTACAGGGTAGGAAC GGCCGTTTCCTGCAGACTCTTTTGCATCTCACTTTTTAAAGAAAGAGAAA GGGGATCGGTGAGATGGGTGGGGTCGTACGGAGGCAGCGAAAGCGTATGC CTATCGCCGGCCGTGCTCACATTATGACATGTCCGGCAGGAAAAAATGTG ACCCTAACATATGAATGAATGTAGCTGCCCTTCGTAGTCTTCGCAGGAGC TCTAGCTCCAGCTCTGTCCCTTGAAGATTGGTGAACGACCGTCAAGCACG CACGTCATAACGGGTACCAGCTGGCTGCCTTTCGCCGTCGAGTCGCCCTC AATCAATTGTCGGAGTATGCAACATTGTGCCCCAAAAACCAAAGGCCTGT TTTTGCTGCTCCACAGCACGGAGCCTCTCTTGCTGGTCGACTTCACGGCT TCGTGGTGTAAGCCGTGCCGAGCGATGGCGCCCGTTTTCGAGGGCTTGGC GAAGGAGAACAAAGGCGCCGCCGCGGTGTTCGTAAAGGTGGACATCGACT ACCTCCCGGACGCCTTCGACGGGACGAGCATCCCTGCCTTTTACGTGAGT CTGCCGGTCGCGTCGCATGCGGTGCCACAGCAGGATGTATGTGCGCACAG CAGCAGGCGGTTGCTGGATGCCCCCGGCGCCCTGCTGTGATTGGCGGTCT GCAGACCTTTTTTATGTGTAAAGATAGACACGCCCTAGGATGAATGCGTG GTCGCTCTGGTGGAGCAAGAGACTACTCCTGTCAGTGACGTTGAAACCGT TGCTGATGCTGGCCTGCGTTGTCTATGAGAGACCAAAACAGCTGCCGCGC CGCAAAGTCGAACGACACCACTTTTTTGCAGTATCATTGTTTGCGGTTAT AGTTGAAACAAACCAGCAACTTTTTTTGCTGTGAGGTTCTAGTAAATATC TCCTTATCGCGCATCGTCTTTCTTCCGTCTCTACCAGGTGCTAAAAAATG GTGTGAAGGTGGACAGCGTCACAGGGTCTGGGGAGGACAAGCTTCGAAAA CTGGTGGCGGACCACGTGGAACAGCAACAAGACAACGGCGGCGGAGCGTC TCCTCCAGACGACAAGAAGTCCCAATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8462:811..2088+

>mRNA_E_fasciculatus_S2_contig8462.16591.1 ID=mRNA_E_fasciculatus_S2_contig8462.16591.1|Name=mRNA_E_fasciculatus_S2_contig8462.16591.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:811..2088+ (Ectocarpus fasciculatus EfasUO2)
ATGTTCTGTGATCCGTTTCCTATCGTCTACACCACCCTGGCAGCCAAGTA
TTTACCCAAGCTGGATGCCAAATCTAGCGGAGGCTCCAAGGGATGTTGCT
CGGACGCCAGCTGCAACGACGAAGGCGACGTGAAGACGGTCCAGTCCCTG
CAACATTGGAAGGACTTGAAACGCACGGAGCCTCTCTTGCTGGTCGACTT
CACGGCTTCGTGGTGTAAGCCGTGCCGAGCGATGGCGCCCGTTTTCGAGG
GCTTGGCGAAGGAGAACAAAGGCGCCGCCGCGGTGTTCGTAAAGGTGGAC
ATCGACTACCTCCCGGACGCCTTCGACGGGACGAGCATCCCTGCCTTTTA
CGTGCTAAAAAATGGTGTGAAGGTGGACAGCGTCACAGGGTCTGGGGAGG
ACAAGCTTCGAAAACTGGTGGCGGACCACGTGGAACAGCAACAAGACAAC
GGCGGCGGAGCGTCTCCTCCAGACGACAAGAAGTCCCAATAG
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