mRNA_E_fasciculatus_S2_contig844.16573.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig844.16573.1
Unique NamemRNA_E_fasciculatus_S2_contig844.16573.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S2_9PHAE)

HSP 1 Score: 379 bits (974), Expect = 2.140e-131
Identity = 199/242 (82.23%), Postives = 207/242 (85.54%), Query Frame = 1
Query:    1 MACEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGE-SSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGSGQPEAVQPTISTTGDAMDVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQSTRREQ 723
            MACEARIIRALRTMEYPGL H+SGSA TGRSLV QPHELAKIVGWIEDRK+RGL ISDREPLRTPGPKWE AFFSYLQEMGCPND KATGGG GE S +AVLRGVSWLVTEAVA DFEDNG +YKAAARELL A    SPQ MGG R  SS+  S    S QPE  Q TIST GDAMD+G G E+R FREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQ+EVNGVI LAQSTRREQ
Sbjct:    1 MACEARIIRALRTMEYPGLDHISGSAATGRSLVAQPHELAKIVGWIEDRKIRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDFKATGGGGGEPSGAAVLRGVSWLVTEAVAYDFEDNGKEYKAAARELLLAKTRFSPQAMGGARGGSSSDPS----SVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQ 238          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3K0_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 4.820e-127
Identity = 191/229 (83.41%), Postives = 201/229 (87.77%), Query Frame = 1
Query:   40 MEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGE-SSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGSGQPEAVQPTISTTGDAMDVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQSTRREQ 723
            MEYPGL HVSGSA +GRSLV QPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWE   FSYLQEMGCPND KATGGG GE SS+AVLRGVSWLVTEAVACDF+DNG +YKAAARELL AN   SPQ +GG R      SS++HGS QPE  QPTIST G AMD+GPGGE+R FREQLRGFTAGVETGDEACDSVATVLRMLYLSDLR+LQDEVNGVIALAQSTRREQ
Sbjct:    1 MEYPGLDHVSGSAASGRSLVAQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEEVLFSYLQEMGCPNDFKATGGGGGEPSSAAVLRGVSWLVTEAVACDFDDNGKEYKAAARELL-ANPRCSPQAVGGAR----GGSSSDHGSVQPEPAQPTISTAGVAMDIGPGGEHRIFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRNLQDEVNGVIALAQSTRREQ 224          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2A7_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 1.220e-20
Identity = 81/272 (29.78%), Postives = 115/272 (42.28%), Query Frame = 1
Query:    7 CEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPND-LKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNH------------------GSGQPEAVQPTISTTGDAMDVGPGG---------ENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS-TRREQNNTA 735
            C   I R+L  + YP                 +P EL K+V W+EDRK+R  +I +R  LR PGP W +AF  YL+++ CP   + A G   G S    LRG+ WL+ +A+A ++ED G+ Y A A                                                G  Q E +  T+     A+ V  G          E+ + R  L  F  G  T D   D  A +L+MLYL+DLR+LQ+ +N ++  AQ  T   + NTA
Sbjct:   20 CLENIERSLTALGYPAKDSFDHE---------EPVELTKLVAWLEDRKIRLYSIEERTALRNPGPAWGSAFKKYLEDLECPQSYIHAEGRLEGSS----LRGLRWLLHKAIAYEYEDKGSTYNARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPLAVVAELCRRCGVRQSEDLLSTLRMLHLAIKVKYGSLEELANDQKEDIQQRLNLDNFPLGFSTEDPLLDKAAKLLKMLYLTDLRNLQNSINDILVTAQEFTANPKTNTA 278          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4J5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.340e-19
Identity = 79/263 (30.04%), Postives = 113/263 (42.97%), Query Frame = 1
Query:    1 MACEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYL--QEMGCPN-DLKATGGGAGESSSAVLRG-VSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGSGQPEAVQPTISTTGDAMD------------------VGP-----GGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
            MA EA   R LR + YP               +   +E+  +V ++EDRKVR L +  R PLRT GP W  AF SY+    + CP     A     GE   A L   V WL+  A+  ++ED      AAA  + S + S+      G  +  +++++         A+ P  +  G  +D                  V P     GG  R     + G + G+ TGD A D    V R+LY+SDLR LQD VN ++   Q+
Sbjct:    1 MAEEASTRRRLRALAYPRWREFR---------LDDDNEVVLLVAFLEDRKVRALPMEARAPLRTAGPGWHDAFLSYVGGDPLNCPLLSAAAIEAAGGEVDRATLGACVMWLIGHAIGVEYEDVAEAANAAAVRVASDSGSAPASGASGGGEEGADAAAVR------AALTPIAALLGVRVDGRAPAELTEAVRRAVQRKVVPAVEAAGGAGRTLPLTMDGISGGLLTGDAALDRAIAVARLLYVSDLRQLQDSVNELLVSVQA 248          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K580_TETUR)

HSP 1 Score: 80.1 bits (196), Expect = 2.480e-14
Identity = 69/229 (30.13%), Postives = 102/229 (44.54%), Query Frame = 1
Query:   97 VTQPHELAKIVGWIEDRKVRGLAISDREPLRT-PGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSS-NSSSTNHGSGQ----------PE------AVQPTIST--TGDAM-----DVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
            V   +    +V W+ED+K+R   I +R  LR    P WE AF  YL+ + CP D+K            VL    WL++ AV  D+ DN   YK    +L+   AS+         D+   N+    HG G+          P+      A+   I T  T DA+     ++   GE + F   L     G +  D+     A VLR+LY++DLR LQ+++N VI   Q+
Sbjct:   19 VEDENSFRNLVAWLEDQKIRHYPIEERSGLRKISSPDWENAFKKYLESLKCPFDVK--------DRKLVL---DWLISTAVRLDYNDNFDKYKDVTGKLVKNQASNPQMVQANPLDNLDFNAKEFKHGIGELAKLLKVPQHPDHLITLKAINHLIKTRLTADALQSEKEELETSGE-KSFT--LENSILGFDVKDQNLSRAAKVLRILYINDLRDLQNKINQVIVSIQA 233          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XVR1_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 9.530e-13
Identity = 68/260 (26.15%), Postives = 113/260 (43.46%), Query Frame = 1
Query:   31 LRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLR-TPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAA----RELLSANASSSPQTMGGTRDHSSNSSSTNH---------GSGQPEAVQPTISTTGDAM-----DVGPGGENRKFREQLRG-----FTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQSTRREQNNTAA 738
            L+ ++YP            ++LV      A ++ W+E+ KVR  +I DR+ L  T  P W+  F  Y++++ CP  L+A+      S +AVL    WL++ A++ +++D    +  AA    R   + ++S   Q +    D    S +  H          +   E++Q   +   D +     D       R+   QL       F  G  TGD+  D  AT+LRMLY+ DLR LQ  ++  +   Q+        AA
Sbjct:    8 LKALKYPK---------PSKNLVEDDVNFASLIVWLENTKVRQYSIEDRKALSDTRNPSWDGVFRKYVKDVQCPIALEAS------SKAAVL---DWLLSYAISLEYQDQADKFNTAALSQSRHKPALSSSQQEQHVYTDIDDPQTSEAIQHLLKQLQLVDTNAPMESLQAARNMVSDQLLPALEDSQLSSAAREAATQLSHLDVDKFPLGFTTGDKKTDVAATILRMLYIKDLRGLQTIIDETLVNVQNYTANPKTDAA 249          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.730e-11
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  115 LAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFED 354
            +AK+V W+EDRK+R   I  R+PLRT G +++AAF SYLQE+ CP           + S A++    WL+ EAV C+ ED
Sbjct:   26 VAKLVSWVEDRKIRLWEIEQRKPLRTAGVEFDAAFQSYLQELECP---------VLQPSQALV----WLLHEAVKCELED 92          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Homeobox (prox 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H731_ACACA)

HSP 1 Score: 68.2 bits (165), Expect = 3.360e-10
Identity = 62/208 (29.81%), Postives = 93/208 (44.71%), Query Frame = 1
Query:  148 KVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELL-SANASSSPQTMGGTRDHSSNSS-----STNHGSGQPE-----AVQPTISTTGDAMDVGPG--------GENRKFREQ--LRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
            KVR L + DR+PLR    +W + F  YL E+G    + A G  A          + WLV  A++  ++D+   Y  AA+E   S   + + Q +    D++S        S  +  G P      AV   I+         P         GE+ +  E+  L  F  G  TGD   D  ATVLR+LY++DLR LQ ++N ++   Q+
Sbjct:    2 KVRHLKVEDRKPLRLFDAQWPSRFAHYLGELGWTGSVDADGNEAA---------IDWLVRYALSLAYDDHAGLYNEAAQEYKRSRELTHAIQQLNKNTDYTSEEFREAVLSLANVLGLPPHEDTLAVLKAIAHLVQRRFSAPALEEAHRQVGEDARTHEKGVLEKFPLGFSTGDSELDKAATVLRLLYVADLRELQSKINHLLVSVQN 200          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: UPF0568 (protein C14orf166-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SUE4_AUXPR)

HSP 1 Score: 68.6 bits (166), Expect = 4.530e-10
Identity = 71/258 (27.52%), Postives = 106/258 (41.09%), Query Frame = 1
Query:   31 LRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPL-RTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKA---AARELLSANASSSPQTMGGTRDHSSNSSS--------TNHGSGQPEAVQPTISTTGDAMDV-------------GPGGENRKFREQ------LRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQST 711
            LR ++YPG    S  + T  S+  +      +V W+E++K+R   I  R+ L  T    W AA+  YL  + CP            SS  +   + WL + AV+ ++ D      A   AA E+  A +  S  ++    D +S + +        T H   Q E    T+      +D               P G  R+          L GF  G  TG    D+ AT+LRMLYL DLR LQD V+  +   Q++
Sbjct:    8 LRALKYPGAS--SFPSDTRASIEVEAAR--PLVTWLENQKIRHYTIPQRQGLLATSADDWRAAYGQYLTALECPC-----------SSEGLPATLQWLCSRAVSLEYADRNEQLNASTSAAVEVGGAVSDWSEHSLPPFADTASPAVAAAVMRMLRTLH-MDQEEVTPSTVERLSSVLDTQVLPALPGDEDTAAPSGTGRQGVSAAGPIALLAGFPLGFSTGSPLSDAAATILRMLYLRDLRGLQDVVDRELERVQAS 249          
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VLV1_CAPTE)

HSP 1 Score: 60.8 bits (146), Expect = 1.920e-7
Identity = 56/218 (25.69%), Postives = 94/218 (43.12%), Query Frame = 1
Query:  100 TQPHELAKIVGWIEDRKVRGLAISDREPLRTP-GPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGS-----------GQPEAVQPTI--STTGDAM-DVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
            T   +  K++ W+ED+K+R   I DR  LR      W  A   YL+++ CP  L+A       + + +   V WL+  AV  ++ DN   Y+ A+  + S   S +P  +    D  S +   +  +            Q +A+   +    + DA+  V   G  +     +   + G ET D      A VLR+LY+ +LR LQ+  N  +   Q+
Sbjct:   20 TDEEQFRKLMVWLEDQKIRHYKIEDRTALRNVCAGNWNDALKKYLEDISCP--LRA------HNRNEL---VDWLLGYAVRLEYGDNTDKYRTASNNVKSHTKSGNPLDLIDFNDADSKAGILSLAAILELPPHPDHIVQLKAISILVREKLSKDAIASVQKNGIPKPNTIPIEKLSLGFETSDYISQEAAKVLRLLYIRELRDLQNSANEAVVAVQT 226          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized2.140e-13182.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.820e-12783.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.220e-2029.78protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical6.340e-1930.04protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486... [more]
Uncharacterized2.480e-1430.13protein n=1 Tax=Tetranychus urticae TaxID=32264 Re... [more]
Uncharacterized9.530e-1326.15protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 R... [more]
Hypothetical6.730e-1145.00protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Homeobox3.360e-1029.81prox 1, putative n=1 Tax=Acanthamoeba castellanii ... [more]
UPF05684.530e-1027.52protein C14orf166-like protein n=2 Tax=Auxenochlor... [more]
Uncharacterized1.920e-725.69protein n=1 Tax=Capitella teleta TaxID=283909 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig844contigE_fasciculatus_S2_contig844:21654..23620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score369.8
Seed ortholog evalue1e-99
Seed eggNOG ortholog2880.D7G3K0
Preferred nameC14orf166
Model size741
KEGG rclassRC00002
KEGG koko:K15433,ko:K18532
KEGG ReactionR00127,R01547
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.RNA polymerase II complex binding
EggNOG OGsKOG4380@1,KOG4380@2759
Ec32 ortholog descriptionProtein of unknown function UPF0568
Ec32 orthologEc-19_004940.1
EC2.7.4.3
Cds size741
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842503.4058287-CDS-E_fasciculatus_S2_contig844:21653..220071696842503.4058287-CDS-E_fasciculatus_S2_contig844:21653..22007Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig844 21654..22007 -
1696842503.4205656-CDS-E_fasciculatus_S2_contig844:22736..229731696842503.4205656-CDS-E_fasciculatus_S2_contig844:22736..22973Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig844 22737..22973 -
1696842503.4331317-CDS-E_fasciculatus_S2_contig844:23470..236201696842503.4331317-CDS-E_fasciculatus_S2_contig844:23470..23620Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig844 23471..23620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig844.16573.1prot_E_fasciculatus_S2_contig844.16573.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig844 21654..23620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig844.16573.1

>prot_E_fasciculatus_S2_contig844.16573.1 ID=prot_E_fasciculatus_S2_contig844.16573.1|Name=mRNA_E_fasciculatus_S2_contig844.16573.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=247bp
MACEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRK
VRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAV
LRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSS
NSSSTNHGSGQPEAVQPTISTTGDAMDVGPGGENRKFREQLRGFTAGVET
GDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQSTRREQNNTAA*
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mRNA from alignment at E_fasciculatus_S2_contig844:21654..23620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig844.16573.1 ID=mRNA_E_fasciculatus_S2_contig844.16573.1|Name=mRNA_E_fasciculatus_S2_contig844.16573.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1967bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig844:21654..23620- (Ectocarpus fasciculatus EfasUO2)
ATGGCATGCGAAGCACGTATCATTCGAGCGTTGCGCACGATGGAGTACCC GGGACTGGGCCACGTCTCAGGATCGGCAGGAACAGGTCGCAGTTTGGTCA CGCAACCTCATGAGCTCGCCAAGATCGTCGGTTGGATAGAGGACAGAAAG GTGTGTGCGGTGGACTTGGTACAGAGACGAACTCTTGAGGATCTAGCTGT GGCGATACAAGTATGTAGCAGGAGCAACCAACACACCCTTCGCGTAGGTA GCCATTCACGTTCAAGGGTGGGGGATGTATTACCAGAGACATTTTATCAT TTCCCCTTCCGACCCACCGCAGCAGTACTACTTGTGACTGCTGTTGTACC GCCCAGAGGGGGTCCACTACAACCATGTCTTGGGTAACGCTGCTGGTTGT TTGCTATCAAATCACCGTTCGCCATGAGGTTGGCGTAGATAGAGCGCGAC ACCCAATGTATGGCAAATTCACGAGCGAAGAGAGAAGGAGTGTTATCAAC CGGCTGTGCGAGCGACCCATGATCGCTTCTGTCACCCCGATGGCCCTGTA TCCGAGATAAACCCTCCGCACTAACATTGGAGACGGCCGCGTATCCCCCC CCCCGCTTGGGGCCGTTACATCTATCGATGTGCGTGGTATTGTTTAGGTC CGAGGCCTCGCCATCTCCGACCGTGAGCCTCTACGCACGCCCGGGCCGAA ATGGGAAGCGGCGTTTTTCAGCTACTTGCAGGAGATGGGCTGCCCCAACG ATCTCAAGGCAACCGGGGGAGGCGCAGGGGAATCAAGCAGTGCGGTGCTG CGGGGAGTGTCGTGGTTGGTTACCGAGGCCGTGGCCTGTGATTTCGAGGA CAACGGGACGGACTACAAGGCTGCTGCTAGAGAGGTACGCTGCGGTCGGC CCCACGGCGAGACGCTTTCGCTTCGATTGTAGCAGGCCTCGGGTTGGTAT CAAGTGCTATATACCAAAGCGTACTGCTGTTGGGTGGTATGGCTTACGCT GTGCAGCGAGGGACGCTGTCCTCTCCAGCTGCTGGTATTGTTAGTGACGA GTTTTGGGTAGGGTAAAAAACACATCGTGATTTATTATTCACGCGCAGAC GCCCAAAATCTCTTCACCTGACGGTTACAGACTTGGAAACACGCCTCACA AAACTGCCCAAATCCTATGCGGTAGAACCAGTCGTGCGTACAACAGATAC TACACTCCCAATACGTACACCTTTGTTTGCAACATGTGAGCGCTGAGTTG AAGTGAAGGCAAACAACAACAAAAACGTGTTGCCTTTCGTGCCGACGCGT ACGTTCGTGTTGTGGAATGGCAAGTCACGACAGACATGGGGTCGGCTTAG AAGAGGGGAGGCGTATCACGGTATATTTACCGCGCATGTACTGGTCAGAA CACTCCTAAGTTGTTGTTGCTGGCTAAGTACTGTACCAGAACACTGCCTA CCGGGCCTCCTGTGTGCCTTTCTTTTGGACGACACCAACGTACTCTCCCT TCGAAGCCTGCTGTCACCCTCTTTACTGATCACCAGTCCACCTCAATTTC CCCCCCTCCCGCCAACACGACGGTTACATGTTCCTGTTCGGGGAATCTCC TCTACGAACACAGTTGCTGTCGGCGAACGCCTCATCTTCTCCACAAACCA TGGGCGGAACAAGAGACCACAGCAGCAACAGCAGCAGCACCAACCATGGC TCGGGGCAGCCAGAAGCGGTGCAGCCAACCATCAGTACTACCGGCGATGC CATGGACGTCGGTCCTGGAGGAGAAAACCGAAAATTCCGCGAGCAGCTCA GGGGGTTCACGGCTGGGGTAGAGACTGGGGACGAGGCGTGCGACAGCGTG GCGACGGTGCTTCGGATGCTCTACTTGTCGGACTTGAGGAGCTTGCAGGA CGAGGTCAACGGTGTCATAGCCTTGGCGCAATCCACCAGACGAGAACAGA ACAACACAGCAGCATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig844:21654..23620-

>mRNA_E_fasciculatus_S2_contig844.16573.1 ID=mRNA_E_fasciculatus_S2_contig844.16573.1|Name=mRNA_E_fasciculatus_S2_contig844.16573.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig844:21654..23620- (Ectocarpus fasciculatus EfasUO2)
ATGGCATGCGAAGCACGTATCATTCGAGCGTTGCGCACGATGGAGTACCC
GGGACTGGGCCACGTCTCAGGATCGGCAGGAACAGGTCGCAGTTTGGTCA
CGCAACCTCATGAGCTCGCCAAGATCGTCGGTTGGATAGAGGACAGAAAG
GTCCGAGGCCTCGCCATCTCCGACCGTGAGCCTCTACGCACGCCCGGGCC
GAAATGGGAAGCGGCGTTTTTCAGCTACTTGCAGGAGATGGGCTGCCCCA
ACGATCTCAAGGCAACCGGGGGAGGCGCAGGGGAATCAAGCAGTGCGGTG
CTGCGGGGAGTGTCGTGGTTGGTTACCGAGGCCGTGGCCTGTGATTTCGA
GGACAACGGGACGGACTACAAGGCTGCTGCTAGAGAGTTGCTGTCGGCGA
ACGCCTCATCTTCTCCACAAACCATGGGCGGAACAAGAGACCACAGCAGC
AACAGCAGCAGCACCAACCATGGCTCGGGGCAGCCAGAAGCGGTGCAGCC
AACCATCAGTACTACCGGCGATGCCATGGACGTCGGTCCTGGAGGAGAAA
ACCGAAAATTCCGCGAGCAGCTCAGGGGGTTCACGGCTGGGGTAGAGACT
GGGGACGAGGCGTGCGACAGCGTGGCGACGGTGCTTCGGATGCTCTACTT
GTCGGACTTGAGGAGCTTGCAGGACGAGGTCAACGGTGTCATAGCCTTGG
CGCAATCCACCAGACGAGAACAGAACAACACAGCAGCATGA
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