mRNA_E_fasciculatus_S2_contig8434.16567.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8434.16567.1
Unique NamemRNA_E_fasciculatus_S2_contig8434.16567.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8434.16567.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8434contigE_fasciculatus_S2_contig8434:3830..4590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionputative ATP-dependent proteinase, possible LON protease
Ec32 orthologEc-25_003740.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842502.7239208-CDS-E_fasciculatus_S2_contig8434:3831..41231696842502.7239208-CDS-E_fasciculatus_S2_contig8434:3831..4123Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8434 3832..4123 -
1696842502.7373292-CDS-E_fasciculatus_S2_contig8434:4528..45901696842502.7373292-CDS-E_fasciculatus_S2_contig8434:4528..4590Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8434 4529..4590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8434.16567.1prot_E_fasciculatus_S2_contig8434.16567.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8434 3832..4590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8434.16567.1

>prot_E_fasciculatus_S2_contig8434.16567.1 ID=prot_E_fasciculatus_S2_contig8434.16567.1|Name=mRNA_E_fasciculatus_S2_contig8434.16567.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
VTRPGNSKHGSQGLTFPFPESLGCPGKAITASGNTMHRRVAPSALTVAVC
CSLLAATAVGFSTHSPSLLVPAIRPRTTSSRSTIATQQGALAWKRQQQRR
ACGGFRDRGGVVVRMSSG
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mRNA from alignment at E_fasciculatus_S2_contig8434:3830..4590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8434.16567.1 ID=mRNA_E_fasciculatus_S2_contig8434.16567.1|Name=mRNA_E_fasciculatus_S2_contig8434.16567.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=761bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8434:3830..4590- (Ectocarpus fasciculatus EfasUO2)
GTGACCAGGCCAGGCAACAGCAAGCACGGGAGTCAGGGGCTTACCTTCCC
CTTCCCTGAGAGGTGAAACGGAGTCCTGGGTGCGTTGCTATCACAGCTCG
TTGTCGGGGCGTGCTCCTTTGTCACAGCAGGCAAAAAAGTGAGGAAACAT
GATGTTGATCTTGAGCCGTGCTGCCGACGCAGAGCACAAGCGGGGCACAC
GACTCTGCTCTTTGCAGCAGCAGCAGCAGCAGCAAGCCTCTTCCAACCCG
CGGCATAGAAGGCGTGGCAATCGACGGTGGTAGCTCTGATGTTGACGCTT
CCACTCAATCAGGCGGAGAGGTTGTTTTGCAACGTTCGCAAAACTCTCGC
TTTGCATACATCTGACATAGACTACCCTCGTTTGATCCGTCTCCCGCCTC
GGCTGAAACAACCCCCGCTACTGCTCTGTATCCCTGTCCTTCCATCAATC
ACTTTGCTGTGGACCAGCCTCGGGTGCCCCGGCAAAGCAATCACAGCCTC
GGGCAACACCATGCACCGACGAGTGGCGCCATCGGCTCTTACGGTGGCGG
TCTGCTGCTCTCTGCTAGCAGCAACCGCTGTAGGCTTTTCGACCCACTCG
CCCTCACTGCTTGTACCCGCCATCCGACCAAGGACTACAAGCAGCAGATC
AACAATAGCAACACAGCAGGGGGCCCTGGCGTGGAAAAGACAGCAGCAGC
GACGAGCTTGCGGGGGCTTCAGGGACCGGGGCGGTGTGGTGGTGAGGATG
AGCAGTGGCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8434:3830..4590-

>mRNA_E_fasciculatus_S2_contig8434.16567.1 ID=mRNA_E_fasciculatus_S2_contig8434.16567.1|Name=mRNA_E_fasciculatus_S2_contig8434.16567.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8434:3830..4590- (Ectocarpus fasciculatus EfasUO2)
GTGACCAGGCCAGGCAACAGCAAGCACGGGAGTCAGGGGCTTACCTTCCC
CTTCCCTGAGAGCCTCGGGTGCCCCGGCAAAGCAATCACAGCCTCGGGCA
ACACCATGCACCGACGAGTGGCGCCATCGGCTCTTACGGTGGCGGTCTGC
TGCTCTCTGCTAGCAGCAACCGCTGTAGGCTTTTCGACCCACTCGCCCTC
ACTGCTTGTACCCGCCATCCGACCAAGGACTACAAGCAGCAGATCAACAA
TAGCAACACAGCAGGGGGCCCTGGCGTGGAAAAGACAGCAGCAGCGACGA
GCTTGCGGGGGCTTCAGGGACCGGGGCGGTGTGGTGGTGAGGATGAGCAG
TGGC
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