mRNA_E_fasciculatus_S2_contig8418.16551.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8418.16551.1
Unique NamemRNA_E_fasciculatus_S2_contig8418.16551.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Cation_ATPase_N (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B4_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 3.580e-131
Identity = 197/206 (95.63%), Postives = 200/206 (97.09%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPATAGLEYLASDPCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQKATEQREIAQKALKDGEHAWRSPPAA 618
            R +DEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPATAGLEYLAS PC IFTVAKAIPQSL+LSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGV PLSWDDWTWVLRFSLPILLVEEILKA+GRKVNAQKATEQREI QKALKDGE AWRSPPAA
Sbjct:  820 RPKDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPATAGLEYLASKPCEIFTVAKAIPQSLSLSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVTPLSWDDWTWVLRFSLPILLVEEILKAIGRKVNAQKATEQREIVQKALKDGEQAWRSPPAA 1025          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Cation_ATPase_N (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB3_9STRA)

HSP 1 Score: 242 bits (618), Expect = 8.490e-71
Identity = 123/193 (63.73%), Postives = 145/193 (75.13%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPATAGLEYLAS---DPCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQKATEQREIAQ 570
            R +DEPI+S WLLTRY +TGLYVGFAT+GV VHWYL HGV+W QLL+W  C G     P   GLE   S   +PC+IFT AK  PQSL+LS LV MEMLKALSAVSVDNS+LRVPPWRN WL+ GVA P+LLHLAV+Y P     FG+APL+ DDW +V RF+LPI+LVEEILK +GR VNA++  + R   Q
Sbjct:  896 RPRDEPILSAWLLTRYCVTGLYVGFATIGVFVHWYLSHGVSWDQLLHWKECTGWTGFTPT--GLEVGPSGKINPCDIFTAAKGKPQSLSLSVLVMMEMLKALSAVSVDNSILRVPPWRNPWLIIGVAVPTLLHLAVIYTPAASNMFGLAPLTKDDWLYVARFALPIVLVEEILKMIGRAVNAKRERQLRAAMQ 1086          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Cation_ATPase_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z421_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.650e-69
Identity = 117/191 (61.26%), Postives = 144/191 (75.39%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPA-TAGLEYLASD---PCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQKATEQRE 561
            R +DEPIMS WLLTRYL+TG+YVG AT+ + V+WYL  GVTW QL++W  C+     +P   +G+   A D   PC+IF   +  PQSLAL+ LV MEMLKALSAVSVDNS+LRVPPWRN WL+ GV  PSLLHLAVLY P   + FG++PLSW+DW +V +F LPI+L+EE LKAVGR+VNA+K  EQRE
Sbjct:  742 RPRDEPIMSNWLLTRYLVTGMYVGTATISIFVNWYLQQGVTWDQLVHWKDCLNWSDFVPGGLSGVVSGAGDGLAPCDIFAAGRGKPQSLALTLLVFMEMLKALSAVSVDNSLLRVPPWRNPWLILGVLVPSLLHLAVLYTPAAADAFGLSPLSWEDWRYVAQFGLPIVLLEESLKAVGRRVNARKEAEQRE 932          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M5_HETAK)

HSP 1 Score: 219 bits (557), Expect = 2.170e-62
Identity = 105/184 (57.07%), Postives = 134/184 (72.83%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPATAGLEYLASDPCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQKATE 552
            R +DEPIM++W+ TRY LTGLYVG AT+G  + WYL HGV+ SQ+ +W  C   G   P       +  DPC+IFT AKA+PQ++ALS LVTMEMLKAL+A+SV+NS+L+V PW NKWL+ GVA P  LH++VLY P + + FG APLS D+W  V  FSLP+LLVEE+LK VGR++N  K  E
Sbjct:  902 RAKDEPIMTRWMFTRYCLTGLYVGCATVGAFIWWYLAHGVSLSQMTHWGQCTSWGAFHPDYVEGFDVVGDPCSIFTTAKAVPQTMALSVLVTMEMLKALAAISVENSLLKVQPWSNKWLMLGVAVPFALHVSVLYSPVLNKIFGTAPLSADEWKVVFAFSLPVLLVEEVLKFVGRRINKAKMEE 1085          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Q7_9STRA)

HSP 1 Score: 214 bits (544), Expect = 6.610e-61
Identity = 104/182 (57.14%), Postives = 134/182 (73.63%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTC-MGEGMELPATAGLEYLASDPCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQK 543
            R  DEPIM+KW+LTRY++TG YVG AT+G+ ++WYL HGV+  Q+++W  C + +        G  Y   DPC IFT AK IPQSL+LS LVTMEMLKAL+A+SVDNS+L+V PW+N WLLAGVA P  LH  VLY P + + FGVAPL+ DDW  V  F+ PI+LVEEILK VGR+++ ++
Sbjct:  757 RPYDEPIMTKWMLTRYIITGTYVGCATIGIFLYWYLSHGVSLDQVMHWGKCSIWDNFNPSYIPG--YNDGDPCKIFTDAKVIPQSLSLSVLVTMEMLKALAAISVDNSLLKVQPWKNPWLLAGVALPYSLHFLVLYTPVLNKVFGVAPLTADDWKMVFAFAAPIMLVEEILKFVGRRIDRKR 936          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDT0_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.310e-60
Identity = 104/193 (53.89%), Postives = 135/193 (69.95%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMG------EGMELPATAGLEYLASDPCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQKATEQRE 561
            R +D PI++KWLLTRY+LTGLYVG AT+G    WY+ HGV   QL  W +C          +E P  +    +A +PC+IFT A+   QS+AL+TLVTMEMLKA SA+SVDNS+LR+PPWRNKWLL G+A PS LHL V Y+P +G   G+ PL+  DW  VL F+LP++LVEE+LK  GR++ A +A E+ E
Sbjct:  257 RGRDTPILTKWLLTRYVLTGLYVGIATIGAFATWYMRHGVGLFQLARWGSCSTWDNFKLTNLEEPIAS---LIAENPCDIFTPARRHAQSVALATLVTMEMLKAASAISVDNSLLRMPPWRNKWLLLGIAAPSALHLTVTYVPALGGMLGLTPLTAADWISVLIFALPVVLVEELLKMKGRELKALEAAEEEE 446          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZD7_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.110e-56
Identity = 104/190 (54.74%), Postives = 134/190 (70.53%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTC-----MGEGMELPATAGLEYLASDPCNIF-TVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQKATE 552
            R +D PIM+KWLLTRY +TG YVG AT+G  ++WY+ HGV  S+L +W  C        G    A AG   +A+DPC IF   A+   QS AL+TLVTMEMLKA SA+SVDNS+LRVP W+N WL+ G+A PS LHL V YLP +G  FG+ PL+ +DW  VL F+ P+L+VEEILKA+GR+V A+++ E
Sbjct:  722 RGRDSPIMTKWLLTRYCVTGTYVGLATVGAFLNWYVRHGVFVSELTHWGQCSTWEDFTVGAVPAAVAGA--VAADPCAIFGAAARRHAQSCALATLVTMEMLKAASAISVDNSLLRVPTWKNPWLMLGIAVPSALHLGVSYLPSLGGIFGLTPLTKEDWASVLMFAAPVLIVEEILKAIGRRVKAKESEE 909          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TBX1_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.670e-56
Identity = 108/195 (55.38%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPATAGLEYLASDPCNIFT-----VAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLY-----LPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNA-QKATE 552
            R  +EPIM+KWLL RYLLTGLYVG AT+GV    YL  G++  QL  WS C    M  P T     L +   NI +     V + +PQ+L+L+TLV MEMLKALSAVSV++S+LRV PWRN+WLL GVA P LLHLAVLY      PG G+ FG+ PL+ +DW  VL +S PILLV+EILK VGR+V + QKA +
Sbjct:   54 RPSNEPIMTKWLLIRYLLTGLYVGIATIGVFAQHYLRQGISLRQLSKWSNCGNGWMPPPLT-----LFTSTKNICSSLFRDVGRQLPQTLSLTTLVCMEMLKALSAVSVNDSLLRVAPWRNRWLLLGVAGPFLLHLAVLYSSSLGFPGFGKAFGMIPLTKEDWKTVLLWSSPILLVDEILKFVGRRVQSKQKAAD 243          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Cation_ATPase_N (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D109_9STRA)

HSP 1 Score: 201 bits (510), Expect = 5.960e-56
Identity = 100/179 (55.87%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMG-EGMELPATAGLEYLAS---DPCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGR 525
            R   EPI+S+WLL RYL+TG YVGFAT+G+ V W+L  GVTW +L +W  C+  E    P   GL  L     D C++F  A A PQ+LALS LVTMEM KALSAVS+DNS+LRVPPW+N WLL GVA P  +HLAV+Y P + + FGV+ ++  DW  VL+++ PILL++E+LKAVGR
Sbjct:  947 RSSTEPILSRWLLIRYLITGAYVGFATVGIFVQWFLRRGVTWKELTHWGHCVNWEDSFAPDLGGLTSLLGEHPDRCDVFGPALASPQTLALSVLVTMEMFKALSAVSLDNSILRVPPWKNPWLLGGVALPFSIHLAVVYFPFLNQVFGVSSMADSDWLNVLQWAAPILLLDEVLKAVGR 1125          
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZT06_TRICV)

HSP 1 Score: 183 bits (464), Expect = 7.870e-54
Identity = 101/188 (53.72%), Postives = 135/188 (71.81%), Query Frame = 1
Query:    1 RVQDEPIMSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGMELPATAGLEYLASDPC-NIFTVA-KAIPQSLALSTLVTMEMLKALSAVSVDNSMLRVPPWRNKWLLAGVAFPSLLHLAVLY-----LPGVGETFGVAPLSWDDWTWVLRFSLPILLVEEILKAVGRKVNAQK 543
            R  DEPIM++WLLTRY LTGLYVG AT+GV V  Y+  GV+ S L +WS C GE  + P+ A      +  C ++F  A +A+PQ+L+L+ LV MEM KALSAVSVD+S+ +V P +N WLL GVA P LLH+AV+Y     +PG+GE FG+ PLS++DW  VL++S PIL+V+E+LK VGR VN ++
Sbjct:  118 RPSDEPIMTRWLLTRYCLTGLYVGLATVGVFVGHYMSLGVSLSDLASWSKC-GELWQPPSAAVNAAGGALMCEDLFQGAGRALPQTLSLTALVCMEMFKALSAVSVDSSLFQVGPQKNPWLLLGVALPLLLHVAVVYSPALGVPGLGEAFGMVPLSYEDWCTVLKWSAPILVVDEVLKLVGRVVNRKR 304          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8418.16551.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cation_ATPase_N3.580e-13195.63domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Cation_ATPase_N8.490e-7163.73domain-containing protein n=1 Tax=Tribonema minus ... [more]
Cation_ATPase_C1.650e-6961.26domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical2.170e-6257.07protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical6.610e-6157.14protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.310e-6053.89protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical1.110e-5654.74protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical1.670e-5655.38protein n=1 Tax=Pseudo-nitzschia delicatissima Tax... [more]
Cation_ATPase_N5.960e-5655.87domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
Hypothetical7.870e-5453.72protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8418contigE_fasciculatus_S2_contig8418:2651..6127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score391.3
Seed ortholog evalue2.6e-106
Seed eggNOG ortholog2880.D7G2B4
Model size621
KEGG koko:K01537
KEGG TC3.A.3.2
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0202@2759
EC3.6.3.8
Cds size600
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8418.16551.1prot_E_fasciculatus_S2_contig8418.16551.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8418 2651..6106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842500.8453705-CDS-E_fasciculatus_S2_contig8418:2650..27581696842500.8453705-CDS-E_fasciculatus_S2_contig8418:2650..2758Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8418 2651..2758 -
1696842500.8596601-CDS-E_fasciculatus_S2_contig8418:3569..36641696842500.8596601-CDS-E_fasciculatus_S2_contig8418:3569..3664Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8418 3570..3664 -
1696842500.8780112-CDS-E_fasciculatus_S2_contig8418:4296..44151696842500.8780112-CDS-E_fasciculatus_S2_contig8418:4296..4415Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8418 4297..4415 -
1696842500.893081-CDS-E_fasciculatus_S2_contig8418:5118..52611696842500.893081-CDS-E_fasciculatus_S2_contig8418:5118..5261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8418 5119..5261 -
1696842500.9025214-CDS-E_fasciculatus_S2_contig8418:5971..61061696842500.9025214-CDS-E_fasciculatus_S2_contig8418:5971..6106Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8418 5972..6106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842500.9118688-UTR-E_fasciculatus_S2_contig8418:6106..61271696842500.9118688-UTR-E_fasciculatus_S2_contig8418:6106..6127Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8418 6107..6127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8418.16551.1

>prot_E_fasciculatus_S2_contig8418.16551.1 ID=prot_E_fasciculatus_S2_contig8418.16551.1|Name=mRNA_E_fasciculatus_S2_contig8418.16551.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=200bp
MSKWLLTRYLLTGLYVGFATLGVSVHWYLDHGVTWSQLLNWSTCMGEGME
LPATAGLEYLASDPCNIFTVAKAIPQSLALSTLVTMEMLKALSAVSVDNS
MLRVPPWRNKWLLAGVAFPSLLHLAVLYLPGVGETFGVAPLSWDDWTWVL
RFSLPILLVEEILKAVGRKVNAQKATEQREIAQKALKDGEHAWRSPPAA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8418:2651..6127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8418.16551.1 ID=mRNA_E_fasciculatus_S2_contig8418.16551.1|Name=mRNA_E_fasciculatus_S2_contig8418.16551.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3477bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8418:2651..6127- (Ectocarpus fasciculatus EfasUO2)
CGTGTCCAGGACGAACCCATCATGTCCAAGTGGCTCCTCACCCGGTACCT GCTGACGGGTCTTTACGTGGGTTTCGCCACCCTGGGCGTTTCGGTTCATT GGTACCTCGACCACGGAGTGACGTGGTCTCAGCTGCTCAACTGGAGCACG TGCATGGTGAGTAGGCCACGGCATCTATCCATTAGTATAGGAAGCAGAGC GCGTCTGAGATGACAGGAGTGGAGTTTTTCTTTACGACGCTTCGCGCCTG GGATGGAGATGGCAGGCGTGTGTTGGGTGTGGAGTGGTATGTGTTTCGAC ACTGGTCTAGACTAATGTGTACTATGGAGGGAGGAAATCTGCTCGCAAGT TCATGTCTTTCGCGGTACGTAAGTTTTTGGCCAGGGTAAGGGTTGCACAC GTAATTATCTTGTTGTTGATGCTGTGAGAAACCATACAACCGCTTCTTTG TTTTATGAATCATGTGTTCATTCGTTGACGCACGACCTTCTTGTCTCTGA CAGCTCGCGGCGCATGTCTTGATGTCTTGGTCTGTCTGGTTCGTCTTTTG TGCGGTACTCGCTGGTAGAATGGGTTCCTGGCTGACGCTTCTACTCCTCC CACTGTTTTCTCTTGTACAACAGCCTGCCTTGCCTACCTCCTCCTCCCCC TCCTCCCTCCCGGCATGCATGGCCTACGTTCTGGCAAAAACCCTGACAGC AGCCGGCTTTTACTTGTTGTCCAGGGAGACTGGATGTTTTGTGCAGCAGC CCATCTTGCCTACCCCCCCCCTCCCCTCCTCCCCCGCGGCATGCCCAACC TGAACTACGTTTTGGCAAAATCCCTGACGGCTGCGGCTTTCCCTTACTAT TGTTGTCGTCGTGCAGGGCGAAGGGATGGAGCTGCCCGCGACGGCCGGCC TGGAGTACCTCGCGAGCGACCCTTGCAACATCTTCACCGTCGCGAAGGCC ATCCCGCAGTCCCTCGCTCTCTCCACCCTTGTCACCATGGAGATGCTCAA GGCGCTCAGGTAGATGCCTGCGGCCTGCCGGCCTGACGCTAATTAGAGTC CGCGTTTGTTGTCGCATATGGTCGGGGAGTGTTTTTGTTGTTCCTCCAGT GTGCGCTGTGGCGCTCCAAGCTCCTTTTCGGATGTGTGGTGTGGAGGTGT GGAGGACACACCGGGTTCAACTTGCAAGAGAAGAAGAACAGACGCACGGT GCAACGGGTTGTGTGTGAGACAGACAGAGAGGGGGCAGCTAGCCCTCTCG TGTTGGTACGCGGGTTCCCCGTGTGCACTGGCTTTATCTGTGGCGCTCTA TATATCTGTGGCAACACCGAAAAGGTAGATCTACCTATCTCCGACAACAG TTTGAGGTGTCGTTCATTTCACCAGAACGAGAGATTTTGGAGAGAGATAG CGTGACGTAATGTGTGCCTTTGGAGCGGCGAAGGACGTGCTGCGTCGAAC AATGGGCTCATTTTCATTCACCCACCCCCGAACACTACACTGGCCGGCTG TGCTCACGTGGGAATTCGCCTGCCGTCGTCTACGTGCTGACAACCTATCC CCTCTTTCGTGCGTAAGACTTGCCACTGGTTCAGCGTCAGCGCGGCTAAC GCTCCTTCTAAAGGCCTTGGTCTCTATTCTACTGTGTGTGCTTTTATTGA TTTTCCCGTTCTCGCTGCTGTCGCGCTCGGCTGCGTCCTGGTCGCTGGGG GGGGTGATGCAGCGCCGTGTCCGTGGACAATTCTATGCTGCGGGTGCCCC CGTGGCGCAACAAGTGGCTGCTGGCGGGGGTGGCCTTCCCGTCCTTGCTG CACCTGGCGGTGCTCTACCTCCCGGGTGTCGGTGAGAAGAGACAAGTCCA CCGCTTGTGTTGAGCCGTCGTGCGGCCAGGCGTGGTGGTTATTTAGTCTC TGTGGTCTAGTGTGGTCTGTTTCATCTGTTTCTTCTGCTTAAGTTGGCTG TTTAGTCTGTGTGGTCTAGTGTGGTCTGTTTCGTCTGTTCAGTCTGCTGT GTGCCTACTCTGTTTAGTCTGTTCAGGCTGCTTAGTTTGCTTCGACTCTG TTTAGTTTGTTTGGCCTGTGTAGTCCGTCCGTCCCATGCTGTTGGGTGTT CTTGGGTGCATTAACGAGTCTAGTCCGCTCCGTCGGGATTTGTATTCTCG CTCGCTCGCTCGTCGTTGTGTGTTGTGTGCCATGTTGCTCTGCTGTGGCC GAGCACCTCGAAGGGCGGCTGTCTGGCTGCTTTTCTGCGCGAGAACAGGC GCTGATTTCGTTCCTCTTGTATATGTTTTTTTTCATATATATCATGAATC CATCTCTATCCATGGATAAAGGGGTCCAGGATAATTAGCATTGAATTTAT AACGTTTATTTGAACGGCTCTTTGCGGGACCTATTCATGTAGATGGAGTG AAGTTGCCTGTGATGCACTCACTCTCCGGACCCACGTTGCTGTGTTGTTT TTTCCCTTTTCAGGCGAAACGTTCGGCGTTGCGCCGCTGTCGTGGGACGA CTGGACTTGGGTGTTGCGCTTCTCCCTGCCCATCCTCCTCGTGGAAGAGA TTCTCAAGGTATGTATGCAAAATTGATGGCTTCTGGTCGCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCTTTCCACTCCCAAACACACAACCTC ACTTCTACATTCAAAATTATTAATTTTTGGTTAAACACAGGGGGGGGGGG GNNNNNNNNNNCTCCTCCGGGAAGAGATTTTCAAGGTATTTTGGCAAAAT TTATGGCTTCTGGGCCCCCCCCCCCCCCCCCTCCATCGTCCTCCGCTTTC CCATAGGCACACAAACCACATGTCTCTGATTCACACTTGAAATTGAATTG TTTGCGGACAAGGCCGGAGCGGAGGTGTTAAAATGACTGAAACTCCAGTT GTGTGAGGTGTTGTGCATCTACACGCTTCCATCTTGTGTGGAGGATAACA AACATCTCCGAATGAACGAGCACGACACACGCCAGTTTGGTGCCCGCGGA GACGTGGAACGGATGTAGTATGAGTATGTGCCTGTTCTGTGCCCCCCCCC CTCCCAGTTTTGAACGAAGGTTTTCCTTTACTGTATGTTTCGTGGCGTCT GACTGCTCTTGTTGGTGCTGGGCAAAACCATCATCATCACCAACACCGTG TGTTGCTGGCGGAAAACCGTATGACCATGTGTTGCTTGCCGAAACCCGTA CCGAAGCCTCCCCCCACCCCCCCCCACACACTTATATCTCTTTGATCTCT CTCTGCTCCCTTTCGTGTGGTTGCCTCTGTTTTTTCTGCTCCTGAATTTG TGTGTGCTTCGCGCCGTCTTGTGGTTGTTTTCCGTTCTGAATGGGTTATG GATGGGTTCTGAATGGCAGGCCGTGGGAAGGAAGGTGAACGCCCAGAAAG CCACCGAGCAGCGGGAGATCGCGCAGAAGGCGCTCAAAGACGGGGAACAC GCCTGGCGATCCCCCCCAGCTGCATGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8418:2651..6127-

>mRNA_E_fasciculatus_S2_contig8418.16551.1 ID=mRNA_E_fasciculatus_S2_contig8418.16551.1|Name=mRNA_E_fasciculatus_S2_contig8418.16551.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=600bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8418:2651..6127- (Ectocarpus fasciculatus EfasUO2)
ATGTCCAAGTGGCTCCTCACCCGGTACCTGCTGACGGGTCTTTACGTGGG
TTTCGCCACCCTGGGCGTTTCGGTTCATTGGTACCTCGACCACGGAGTGA
CGTGGTCTCAGCTGCTCAACTGGAGCACGTGCATGGGCGAAGGGATGGAG
CTGCCCGCGACGGCCGGCCTGGAGTACCTCGCGAGCGACCCTTGCAACAT
CTTCACCGTCGCGAAGGCCATCCCGCAGTCCCTCGCTCTCTCCACCCTTG
TCACCATGGAGATGCTCAAGGCGCTCAGCGCCGTGTCCGTGGACAATTCT
ATGCTGCGGGTGCCCCCGTGGCGCAACAAGTGGCTGCTGGCGGGGGTGGC
CTTCCCGTCCTTGCTGCACCTGGCGGTGCTCTACCTCCCGGGTGTCGGCG
AAACGTTCGGCGTTGCGCCGCTGTCGTGGGACGACTGGACTTGGGTGTTG
CGCTTCTCCCTGCCCATCCTCCTCGTGGAAGAGATTCTCAAGGCCGTGGG
AAGGAAGGTGAACGCCCAGAAAGCCACCGAGCAGCGGGAGATCGCGCAGA
AGGCGCTCAAAGACGGGGAACACGCCTGGCGATCCCCCCCAGCTGCATGA
back to top