mRNA_E_fasciculatus_S2_contig8415.16549.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI) HSP 1 Score: 393 bits (1010), Expect = 1.840e-132 Identity = 288/341 (84.46%), Postives = 292/341 (85.63%), Query Frame = 1
Query: 106 LAGRKRGRSQLSPEGFEDTDSSEGDGEXXXXXXXXXXSRLKAAXXXXXXXXXXXXXXXXXKAFKAKLKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSSPSXXXXXXXXXXXXXXXXXXT-----QGNGAPTGQL-RIALY 1110
LAGRKRGRSQLSPEGFE+TDSS+G XXXXXXXXX XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX TVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTA+KLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVC GARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS+PS XXXXXXXXXXXXXXXXX Q GA TGQL RIALY
Sbjct: 58 LAGRKRGRSQLSPEGFEETDSSDG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTGDGGERGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCTGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSAPSGXXXXXXXXXXXXXXXXXXXXXXPQEKGAATGQLLRIALY 394
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: U3-containing (90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.530e-48 Identity = 99/215 (46.05%), Postives = 132/215 (61.40%), Query Frame = 1
Query: 433 TVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRI-----QNRNSNA--------PRG-----------SPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSSP 1005
T ++ A+ +W R C V G + +EL PW+ A +A +E FGAHT KL G+IKA+LP+W+ ++R S PRG SP ++IVC+GARRC+EV+K L+ FRCQV+KLFAKHLK EQ MLR+ FP+ VGTPGR+ LAA G++ L + L++LD ++ KGRSVLDM G D L VRPHL S+P
Sbjct: 122 TAQQAADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEVIKALSPFRCQVLKLFAKHLKPAEQAKMLRR-YFPIAVGTPGRVLKLAAEGAVALGGTQLLLLDAARDAKGRSVLDMAGAREDLCELLRAHVRPHLRSAP 335
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK) HSP 1 Score: 142 bits (359), Expect = 3.710e-37 Identity = 83/185 (44.86%), Postives = 112/185 (60.54%), Query Frame = 1
Query: 460 WARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQ---------NRNSNAP--RGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCV 981
WA++ V G +T LEL + G+ V A LV F+KA +P WK ++Q R + AP RGSP VL+VCAGARRCV ++K L FRC V KLFAKH+KI+EQ+ +L+K C P+ VGTP R+ LA G L L+S+ L+I D+ K+VK ++LD++GV D M F V
Sbjct: 12 WAKYVGVMGGKLTDLELRPENVPEGAFLPV----AAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVALLKGLAVFRCPVAKLFAKHMKIQEQQKLLKK-CAPIAVGTPSRLLKLAQFGDLCLESTELIIFDMGKDVKQMTILDVNGVKEDLMDFFKTTV 191
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQF7_SAPPC) HSP 1 Score: 117 bits (294), Expect = 5.030e-27 Identity = 66/176 (37.50%), Postives = 103/176 (58.52%), Query Frame = 1
Query: 469 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLV 996
+ K GD +TP E+ +T ++ FG HT F++A P+WK + + R SP +LIVC+ A R VE+ K + +F+C V KLFAKHLK+EEQ ML++ P+ +GTPGR++ L +L L+ ++ V+LD+ + K S+L++ S DT+ DC+R L+
Sbjct: 92 YMKHYGDSLTPAEIA-DGLTESHFTVLKQFGKHTLESYTRFLRALCPEWKFLFRGKGIKDKR-SPLLLIVCSSALRAVEIGKAIASFKCHVAKLFAKHLKLEEQVEMLKR-FHPIAIGTPGRIKTLLEMKALSLECTSHVVLDMHLDSKNMSLLELKDTSKDTI----DCIRESLL 260
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Ubiquitin-specific (protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5F1_PYTIN) HSP 1 Score: 117 bits (292), Expect = 1.820e-26 Identity = 65/175 (37.14%), Postives = 99/175 (56.57%), Query Frame = 1
Query: 469 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 993
+ K RG +T LE+ +T +G G HT L +++ +P WK + + + SP LIVC+ A R VEV+KHL++FRC+V KLFA+H+K +EQ+ L P+ VGTP R++ L ++ L ++ VILD+ K+ K ++LD+ S DTM L + P L
Sbjct: 121 YIKHRGGQLTTLEIA-EGLTEHHFVAPKGLGKHTLQSLPLYMRHCVPTWKHDFRGKKIKYDK-SPIFLIVCSSALRAVEVLKHLSSFRCKVAKLFARHMKAKEQEDQLTLHFHPIAVGTPARLKKLLEMDAMSLQHTSHVILDMAKDKKNMTILDLKDTSKDTMELLQFYLLPRL 293
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Aste57867_20262 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LER4_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.180e-26 Identity = 64/176 (36.36%), Postives = 101/176 (57.39%), Query Frame = 1
Query: 469 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLV 996
+ K+ GD +TPLE+ + A V FG H L F+++ P WK + + + SP +LIVC+ A R VEV K + F+C V KLFAKHLK+ EQ L++ P+ +GTPGR++ L +L L+ + V+LD+ ++ K S+L++ + DT+ DC+R H++
Sbjct: 99 YAKLYGDNLTPLEIA-NGLVESHFATVPNFGKHNLDSLSRFLRSLCPKWKLLFKGKGIKDKK-SPILLIVCSSALRAVEVGKAIAVFKCHVAKLFAKHLKLSEQVDNLKR-FHPIAIGTPGRIKTLLEMKALSLECTTHVVLDMYRDSKNMSILELKDTAKDTV----DCIREHML 267
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I4I1_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.470e-26 Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query: 469 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 993
+ K RG +T LEL +T +G G H +L +I LP +KK + + SP LI+C+ A RCV+V+KHLT F+C+V KLFAKHLK++EQ L P+ VGTP R++ L G+L L + VI D+EK+ K +VL++ + + M L P L
Sbjct: 102 YTKHRGGQMTSLELA-DGLTETHFVAPKGLGKHRLDRLPAYIHQLLPSFKKDFVGKGKRRDK-SPYFLILCSSALRCVDVIKHLTPFKCRVAKLFAKHLKVDEQAKQLANMYLPIAVGTPARVKKLLEMGALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFYFTPLL 274
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCP8_9STRA) HSP 1 Score: 114 bits (286), Expect = 9.550e-26 Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 1
Query: 469 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 999
+ K+ GD +TP E+ +T + V FG HT L F+++ P WK + + + SP ++IVCA A R VEV K L +F+C V KLF KH+K+ EQ L++ P+ +GTPGR++ L +L L+ + V+LD+ ++ K S+L++ S DT+ D +R HL++
Sbjct: 107 YTKMYGDNLTPHEIA-NGLTEAHMTVVPNFGKHTLESLSRFLRSICPAWKSLFKGKGIKY-KASPILIIVCASALRAVEVGKALASFKCHVAKLFGKHIKVSEQVQNLKR-FHPIAIGTPGRIKTLLEMKALSLECTTHVVLDMHRDSKEMSILELKDTSKDTI----DIIRDHLLT 276
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Ubiquitin-specific (protease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC79_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.350e-24 Identity = 59/178 (33.15%), Postives = 98/178 (55.06%), Query Frame = 1
Query: 469 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSS 1002
+ K D +TP E+ +T ++ FG H L F++A P+WK + + + SP +LIVC+ A R VE+ K + F+C V KLF KHLK+EEQ L++ P+ +GTPGR++ L L L+ + V++D+ ++ K S+L++ S D + + D + P L ++
Sbjct: 93 YMKHYSDNLTPAEIA-NGLTESHFTEIKQFGKHNLDSLTRFLRALCPEWKFAFKGKGIK-DKSSPILLIVCSSALRAVEIGKAIAGFKCHVAKLFGKHLKLEEQVENLKRW-HPIAIGTPGRIKTLLEMKGLSLECTTHVVVDMHRDSKNMSILELKDTSKDMIDCIRDSMLPRLTTN 267
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ2_PYTOL) HSP 1 Score: 110 bits (274), Expect = 5.060e-24 Identity = 59/175 (33.71%), Postives = 96/175 (54.86%), Query Frame = 1
Query: 469 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 993
+ K RG +T LEL + G G HT L +++ P WK + + + S L++C+ A R VEV+KH +F+C+V KLFAKH+K+E+Q++ L K P+ VGTPGR++ L +L L+ + V +D+EK+ K ++L++ + + M L + P L
Sbjct: 109 YIKQRGGQMTTLELA-EGLAESHFVAPAGLGKHTLPNLSLYMRHLRPAWKVDFKGKGKKYDK-STYFLVICSSALRAVEVLKHFGSFKCKVAKLFAKHMKVEDQEIQLAKTFNPISVGTPGRIKKLLEINALSLEHTTHVFIDMEKDKKAMTLLELKDTAKEMMELLQFHLLPQL 281 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8415.16549.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8415.16549.1 >prot_E_fasciculatus_S2_contig8415.16549.1 ID=prot_E_fasciculatus_S2_contig8415.16549.1|Name=mRNA_E_fasciculatus_S2_contig8415.16549.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp MKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGback to top mRNA from alignment at E_fasciculatus_S2_contig8415:143..4252+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8415.16549.1 ID=mRNA_E_fasciculatus_S2_contig8415.16549.1|Name=mRNA_E_fasciculatus_S2_contig8415.16549.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4110bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8415:143..4252+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8415:143..4252+ >mRNA_E_fasciculatus_S2_contig8415.16549.1 ID=mRNA_E_fasciculatus_S2_contig8415.16549.1|Name=mRNA_E_fasciculatus_S2_contig8415.16549.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8415:143..4252+ (Ectocarpus fasciculatus EfasUO2)back to top |