mRNA_E_fasciculatus_S2_contig8414.16547.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8414.16547.1
Unique NamemRNA_E_fasciculatus_S2_contig8414.16547.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8414.16547.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8414contigE_fasciculatus_S2_contig8414:1375..2502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1083
Hectar predicted targeting categoryother localisation
Exons3
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842500.3609982-UTR-E_fasciculatus_S2_contig8414:1374..15581696842500.3609982-UTR-E_fasciculatus_S2_contig8414:1374..1558Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8414 1375..1558 -
1696842500.3937116-UTR-E_fasciculatus_S2_contig8414:2184..22051696842500.3937116-UTR-E_fasciculatus_S2_contig8414:2184..2205Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8414 2185..2205 -
1696842500.4127915-UTR-E_fasciculatus_S2_contig8414:2239..25021696842500.4127915-UTR-E_fasciculatus_S2_contig8414:2239..2502Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8414 2240..2502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842500.3714864-CDS-E_fasciculatus_S2_contig8414:1558..19221696842500.3714864-CDS-E_fasciculatus_S2_contig8414:1558..1922Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8414 1559..1922 -
1696842500.3803172-CDS-E_fasciculatus_S2_contig8414:1933..21841696842500.3803172-CDS-E_fasciculatus_S2_contig8414:1933..2184Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8414 1934..2184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8414.16547.1prot_E_fasciculatus_S2_contig8414.16547.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8414 1559..2184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8414.16547.1

>prot_E_fasciculatus_S2_contig8414.16547.1 ID=prot_E_fasciculatus_S2_contig8414.16547.1|Name=mRNA_E_fasciculatus_S2_contig8414.16547.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=205bp
MKHYTYTISYTKQQRTARHAAKRKRHTKKARQQELPVKSCPEPTHATKNK
TPAMGITNTLSLLCRGYRPSQHLRNHRVDTTGGRAVWGGGAPSWDPCAEK
SGYRGSGWHRVIKSPTTPPREATLRMMRKVGRGTASGAGAALRCCCRQRR
QLLLASMVMLSLLLEVLVLLMRRLLLGVAARRRERHLVVRERQRQLRLGR
GLVS*
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mRNA from alignment at E_fasciculatus_S2_contig8414:1375..2502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8414.16547.1 ID=mRNA_E_fasciculatus_S2_contig8414.16547.1|Name=mRNA_E_fasciculatus_S2_contig8414.16547.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1128bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8414:1375..2502- (Ectocarpus fasciculatus EfasUO2)
CCCCCCAGTAACAGCAAGAGTATCTCCGTGCCCCCCCCCCCTAGCGCTAA
GCGACCACTCCGGTAGAGCAGGGATTTTCCGCGCGTGTGCGTGGAAGTCC
CAGATCATGGGAGTCACAACAACCGCAAGAGGACATGGACAAAACCGGTT
GAGGAGGCTGGAAACACGTAAACCTTTCTAATTGTGACGAGGTGTGCCAC
ACACACACCTGTTTACCACCACACCCTTACAACCGCACCGGTACGATGGG
GAGACTTTATCTCGCCATCCCTTCCCGCTCCCGTGGGCCCCCAACAGGGG
ATGTGAAAAAAAAAAAACATGAAACACTATACATATACCATATCATATAC
AAAGCAGCAGCGTACCGCCAGACACGCGGCAAAAAGAAAAAGACACACAA
AGAAAGCGCGACAACAAGAGTTGCCGGTAAAATCTTGTCCAGAACCCACA
CATGCAACCAAAAACAAGACCCCGGCCATGGGTATCACCAACACGCTCTC
TCTCCTCTGCCGCGGGTACCGACCGTCGCAGCATCTGCGAAACCATCGAG
TCGATACGACGGGCGGAAGGTCCCGCGGAGGGCCGTCTGGGGGGGGGGGG
CGCCTTCCTGGGATCCATGCGCTGAAAAATCTGGCTACAGGGGGTCGGGG
TGGCACCGAGTAATCAAATCACCTACTACCCCCCCCAGGGAGGCTACGCT
ACGAATGATGAGAAAAGTGGGTCGAGGTACTGCCTCCGGCGCCGGCGCCG
CCTTGCGCTGCTGCTGCAGACAGAGGCGGCAACTGCTGCTGGCTTCGATG
GTGATGCTCAGCCTGCTGCTGGAAGTGCTGGTGCTGTTGATGCGGAGACT
CCTGCTGGGAGTGGCCGCGCGGCGGCGGGAACGCCACCTGGTGGTGAGGG
AGAGGCAGCGGCAGCTGCGACTGGGGCGGGGGCTGGTGTCGTGAGTGATG
CTGCTGCTGCGGCAGCGGCAGCGGCGATGATTGACCCAGCCGTCCCGGCG
TCCCCGCCCCGCCGCCGCCGCCGGCTTCCTCGACCGCACGACTACTACCG
TTAACGGTCGCCGCCACCGCCTGCGCTGCCGCCGCCGCCGCCGCCGCCAC
CACTGCCGCCGAGGCAGGTCTTCGCTGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8414:1375..2502-

>mRNA_E_fasciculatus_S2_contig8414.16547.1 ID=mRNA_E_fasciculatus_S2_contig8414.16547.1|Name=mRNA_E_fasciculatus_S2_contig8414.16547.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=615bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8414:1375..2502- (Ectocarpus fasciculatus EfasUO2)
ATGAAACACTATACATATACCATATCATATACAAAGCAGCAGCGTACCGC
CAGACACGCGGCAAAAAGAAAAAGACACACAAAGAAAGCGCGACAACAAG
AGTTGCCGGTAAAATCTTGTCCAGAACCCACACATGCAACCAAAAACAAG
ACCCCGGCCATGGGTATCACCAACACGCTCTCTCTCCTCTGCCGCGGGTA
CCGACCGTCGCAGCATCTGCGAAACCATCGAGTCGATACGACGGGCGGAA
GGGCCGTCTGGGGGGGGGGGGCGCCTTCCTGGGATCCATGCGCTGAAAAA
TCTGGCTACAGGGGGTCGGGGTGGCACCGAGTAATCAAATCACCTACTAC
CCCCCCCAGGGAGGCTACGCTACGAATGATGAGAAAAGTGGGTCGAGGTA
CTGCCTCCGGCGCCGGCGCCGCCTTGCGCTGCTGCTGCAGACAGAGGCGG
CAACTGCTGCTGGCTTCGATGGTGATGCTCAGCCTGCTGCTGGAAGTGCT
GGTGCTGTTGATGCGGAGACTCCTGCTGGGAGTGGCCGCGCGGCGGCGGG
AACGCCACCTGGTGGTGAGGGAGAGGCAGCGGCAGCTGCGACTGGGGCGG
GGGCTGGTGTCGTGA
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