mRNA_E_fasciculatus_S2_contig8412.16546.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8412.16546.1
Unique NamemRNA_E_fasciculatus_S2_contig8412.16546.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8412.16546.1 vs.
Match: Ferredoxin--NADP(+) (reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHJ2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.400e-30
Identity = 93/108 (86.11%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:  103 QVSKLREVMAGVQASRGLPSSAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----ALVWPGTPSEEFIAGADTRSLEREPYWDMSELPMHTFKAKAPYTGTIET 414
            QVSKLREV+AGVQASRGLPSSAA   XXXXXXXXXXXXXXXXXXXXXXXXX        ALVW G PSEEFIAGA TRSLEREPYWDMSELPMHTFKAKAPYTGTIET
Sbjct:    2 QVSKLREVVAGVQASRGLPSSAAAVPXXXXXXXXXXXXXXXXXXXXXXXXXVKPKRKANALVWAGAPSEEFIAGAHTRSLEREPYWDMSELPMHTFKAKAPYTGTIET 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8412.16546.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ferredoxin--NADP(+)4.400e-3086.11reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8412contigE_fasciculatus_S2_contig8412:3007..4726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score159.8
Seed ortholog evalue8.9e-37
Seed eggNOG ortholog2880.D7FSR5
Model size416
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.NADPH-hemoprotein reductase activity
EggNOG OGsCOG0369@1,KOG1158@2759
Cds size414
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842500.2980099-CDS-E_fasciculatus_S2_contig8412:3006..31111696842500.2980099-CDS-E_fasciculatus_S2_contig8412:3006..3111Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8412 3007..3111 +
1696842500.309908-CDS-E_fasciculatus_S2_contig8412:4096..43381696842500.309908-CDS-E_fasciculatus_S2_contig8412:4096..4338Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8412 4097..4338 +
1696842500.3230157-CDS-E_fasciculatus_S2_contig8412:4659..47261696842500.3230157-CDS-E_fasciculatus_S2_contig8412:4659..4726Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8412 4660..4726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8412.16546.1prot_E_fasciculatus_S2_contig8412.16546.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8412 3007..4726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8412.16546.1

>prot_E_fasciculatus_S2_contig8412.16546.1 ID=prot_E_fasciculatus_S2_contig8412.16546.1|Name=mRNA_E_fasciculatus_S2_contig8412.16546.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp
MRGTRPARGGVSMDAGGGSEGTTATLETVKSLSDQVSKLREVMAGVQASR
GLPSSAAVAPAPAPAATSATATSAAATGGSAKAKRKAKAALVWPGTPSEE
FIAGADTRSLEREPYWDMSELPMHTFKAKAPYTGTIET
back to top

mRNA from alignment at E_fasciculatus_S2_contig8412:3007..4726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8412.16546.1 ID=mRNA_E_fasciculatus_S2_contig8412.16546.1|Name=mRNA_E_fasciculatus_S2_contig8412.16546.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1720bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8412:3007..4726+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTGGCACCAGACCGGCGAGGGGCGGGGTGTCCATGGATGCAGGAGG
TGGATCGGAGGGGACGACGGCGACGCTTGAAACCGTCAAGAGCCTCAGCG
ATCAGGTACAAGAGAGTTGATGTTTTTCGCGGTGACGGGAACCTTCTGCC
GGTCGCCCTATACAGGGCGGGTGAGGTGAAGTTGGCTGGCATTGACGGGA
CAATCTAATCAAGTTGTTCTACACATCGAATAATGCGGATGCAACGTATA
AGGGGGTGGTCACTCTCAGCTGCCCCACCACTGCCTGATATCGGGGACTG
TACCCCCACTGCTGTGCCTGGTTACAGCTGTGCTCCGTTGCTGTCGTTGA
TTTTTTCGTTACTTGCGGACCCCTCGGGGCCAGTTTATTTAGTGTACCTT
TTCTAGGGTAAGTTAGCCTGTGACCACGGGAATCGACCGCGTCAAGTGTT
GGATCAGTACGGACATAGGAAGGTACTGGGTACAAAGAGATCGGAACGGT
TTTTTAATGTGAAGACAACAACAACAACAACAACAAACTGCTGTGGCACA
TGTTTGTTTACATGGCGCGGTAGATGCTCGCGCCTTCCCCGGGGTCCGTG
GAAACCACATTGTTCCATGGGTGCTTTATCGCGAGTGAGCTACAAGTGCG
TGGTTTGCTTTTTGACGTCCTCTTCTTGCCCGTTATTGTTTGGAGGGGGG
GTGTACGATGGAAATGGTGATCTCACGGTCCATACTTGCCCCGTTGGTTG
GGTGGACCCCCCCTTTCTCGTGAAAGCATCTGAGCAAGAAAATGTTCCCG
CCTCCTTCCTGAGCTCCTCCCGAGGGATGGGACACTCGGACACCAACAGA
ATGACGTTCTCCCGCCTGCAGGAACCCACAAGCCTGCGCGGGGTACATGC
CAGTGTCAATACTATCTTCGTCTCCGCCGTCTTCTTCAGCGCCATACACA
AGGCAGTATGTGTTGCCGTACCTCTATCGTCGTCGAAATAAAAGTTATGG
TTGGCATATGTGTTTGTTACGTGGACGCGGCAAATTTCCCCTGTCCCCCC
TACCCTGTCCCCCCTACCCGTCCACCTTTTGGGGACACAGGTGTCCAAGC
TCCGAGAGGTGATGGCCGGGGTGCAAGCATCCCGCGGGCTTCCCTCTTCC
GCCGCCGTGGCGCCGGCACCTGCACCAGCGGCGACGAGCGCTACTGCTAC
TTCTGCTGCCGCTACGGGAGGGAGTGCCAAGGCAAAAAGAAAAGCGAAGG
CGGCGCTTGTGTGGCCCGGAACGCCTTCGGAGGAGTTTATCGCCGGCGCC
GATACTCGCTCTCTCGAGCGGGAGCCCTACTGGTGAGCGTCCTCGATCCC
GCGTGATGTTGTTGTTGTCGTTGGAGGTGGGCTGCGGATCGACTTGAGGG
GGTGTTGAGAGGTTCGTCCTTTCTTCGGGGGTACAGCAGTACACTACAGT
ACTGTATCCTGGGCATTTAGGAGAGGGGGGAAGGCTGCCCAAGCAGCCGA
ATGCTCCACGAAGGTACGACACCATCACCTCTCTGTCTGTCTGTCTCTTT
CTCTCTCTCTCTCTCTCTCTCTCTCTTGCCCTCTCTCTCTCTGTCTCTCT
CTATTCCTCTCTCTCCCTCTCTCTCTCTCCCCCACGTCCCGTGGCGTTTT
CAGGGATATGTCGGAGCTCCCAATGCACACGTTCAAGGCAAAGGCGCCAT
ACACCGGCACCATCGAGACG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8412:3007..4726+

>mRNA_E_fasciculatus_S2_contig8412.16546.1 ID=mRNA_E_fasciculatus_S2_contig8412.16546.1|Name=mRNA_E_fasciculatus_S2_contig8412.16546.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8412:3007..4726+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTGGCACCAGACCGGCGAGGGGCGGGGTGTCCATGGATGCAGGAGG
TGGATCGGAGGGGACGACGGCGACGCTTGAAACCGTCAAGAGCCTCAGCG
ATCAGGTGTCCAAGCTCCGAGAGGTGATGGCCGGGGTGCAAGCATCCCGC
GGGCTTCCCTCTTCCGCCGCCGTGGCGCCGGCACCTGCACCAGCGGCGAC
GAGCGCTACTGCTACTTCTGCTGCCGCTACGGGAGGGAGTGCCAAGGCAA
AAAGAAAAGCGAAGGCGGCGCTTGTGTGGCCCGGAACGCCTTCGGAGGAG
TTTATCGCCGGCGCCGATACTCGCTCTCTCGAGCGGGAGCCCTACTGGGA
TATGTCGGAGCTCCCAATGCACACGTTCAAGGCAAAGGCGCCATACACCG
GCACCATCGAGACG
back to top