mRNA_E_fasciculatus_S2_contig8402.16541.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8402.16541.1
Unique NamemRNA_E_fasciculatus_S2_contig8402.16541.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8402.16541.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8402contigE_fasciculatus_S2_contig8402:5821..6670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size823
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842499.8403847-UTR-E_fasciculatus_S2_contig8402:5820..58911696842499.8403847-UTR-E_fasciculatus_S2_contig8402:5820..5891Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8402 5821..5891 +
1696842499.8534067-UTR-E_fasciculatus_S2_contig8402:5918..62131696842499.8534067-UTR-E_fasciculatus_S2_contig8402:5918..6213Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8402 5919..6213 +
1696842499.8745656-UTR-E_fasciculatus_S2_contig8402:6633..66701696842499.8745656-UTR-E_fasciculatus_S2_contig8402:6633..6670Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8402 6634..6670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842499.8639905-CDS-E_fasciculatus_S2_contig8402:6213..66331696842499.8639905-CDS-E_fasciculatus_S2_contig8402:6213..6633Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8402 6214..6633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8402.16541.1prot_E_fasciculatus_S2_contig8402.16541.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8402 6214..6633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8402.16541.1

>prot_E_fasciculatus_S2_contig8402.16541.1 ID=prot_E_fasciculatus_S2_contig8402.16541.1|Name=mRNA_E_fasciculatus_S2_contig8402.16541.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp
MINLLYCMNYCTSKYSSREGGCASLTLTPSPTPYPLQKPSAISSRRLLKQ
PRMPPAKFSIPRSAPTEFAPPATTSGRNLSKLHRPSLPRPRTGRGACVMP
TAIPVIGWLRLLRTATPTACLSCYYCSTAAIILLLVRER*
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mRNA from alignment at E_fasciculatus_S2_contig8402:5821..6670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8402.16541.1 ID=mRNA_E_fasciculatus_S2_contig8402.16541.1|Name=mRNA_E_fasciculatus_S2_contig8402.16541.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=850bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8402:5821..6670+ (Ectocarpus fasciculatus EfasUO2)
ATTTTTGTGAGGCTCAATTGCTCAACTCCTGGGTTCTCACGTGTGGTGGC
GCGTTCTTCTGTAATTTAATCGCCTTTTTCTTCTTTCACATCATCTAGTA
ATTCATGACCGACCGCCTTGCTTGCTGTCCCCTTACGCTATCCAGTACCA
TGTATTATCCCGTGGGAATGCAGCCGGTGTACCAAACGAGTCCGTCCCAT
TCCTGTCGCCATCACGAACGGAGAACTACATTAATTACCGGTCCGATAGA
AAGCAGCCGCAGGAGCTAGCCGGCTACGAAGAGACTACCCGAGCTCCGCC
AACATAAAAATGTAGAAGAACGCAACAACACCGCCCGCATCATCATCGAA
AAAACGACCACCGGACAGACCGCTTTCCTATCGCCAAGATTTTATGATCA
ATCTATTATACTGTATGAACTATTGTACTTCCAAGTACAGTAGTAGAGAG
GGGGGTTGCGCATCCTTAACCCTAACCCCCAGCCCCACCCCGTACCCCCT
GCAAAAACCAAGCGCAATATCCTCGCGAAGGCTACTGAAACAACCCCGCA
TGCCTCCCGCCAAGTTTTCAATACCTCGCAGCGCGCCAACCGAGTTCGCC
CCGCCGGCAACTACTTCCGGCCGAAACTTGAGTAAACTCCACCGTCCGTC
CTTGCCCCGTCCCCGGACTGGGAGGGGCGCGTGCGTCATGCCTACCGCAA
TACCAGTCATCGGCTGGCTGCGGCTGTTGAGGACGGCGACACCAACGGCC
TGTCTGTCCTGCTACTATTGCAGCACAGCTGCTATTATACTGCTACTCGT
ACGAGAACGTTGAGCTACGGATACTTGCCCGTGTATCCCGTGTATCCCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8402:5821..6670+

>mRNA_E_fasciculatus_S2_contig8402.16541.1 ID=mRNA_E_fasciculatus_S2_contig8402.16541.1|Name=mRNA_E_fasciculatus_S2_contig8402.16541.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8402:5821..6670+ (Ectocarpus fasciculatus EfasUO2)
ATGATCAATCTATTATACTGTATGAACTATTGTACTTCCAAGTACAGTAG
TAGAGAGGGGGGTTGCGCATCCTTAACCCTAACCCCCAGCCCCACCCCGT
ACCCCCTGCAAAAACCAAGCGCAATATCCTCGCGAAGGCTACTGAAACAA
CCCCGCATGCCTCCCGCCAAGTTTTCAATACCTCGCAGCGCGCCAACCGA
GTTCGCCCCGCCGGCAACTACTTCCGGCCGAAACTTGAGTAAACTCCACC
GTCCGTCCTTGCCCCGTCCCCGGACTGGGAGGGGCGCGTGCGTCATGCCT
ACCGCAATACCAGTCATCGGCTGGCTGCGGCTGTTGAGGACGGCGACACC
AACGGCCTGTCTGTCCTGCTACTATTGCAGCACAGCTGCTATTATACTGC
TACTCGTACGAGAACGTTGA
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