mRNA_E_fasciculatus_S2_contig8399.16531.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8399.16531.1
Unique NamemRNA_E_fasciculatus_S2_contig8399.16531.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8399.16531.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX47_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.970e-19
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRISA 132
            QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRI+A
Sbjct:  444 QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRIAA 487
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BLAST of mRNA_E_fasciculatus_S2_contig8399.16531.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.010e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRISA 132
            QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSI KLAPTNPRI+A
Sbjct:  558 QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSIAKLAPTNPRIAA 601
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8399.16531.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.970e-1997.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.010e-1895.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8399contigE_fasciculatus_S2_contig8399:257..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size133
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.5540338-UTR-E_fasciculatus_S2_contig8399:256..2621696842498.5540338-UTR-E_fasciculatus_S2_contig8399:256..262Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8399 257..262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.5652952-CDS-E_fasciculatus_S2_contig8399:262..3881696842498.5652952-CDS-E_fasciculatus_S2_contig8399:262..388Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8399 263..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8399.16531.1prot_E_fasciculatus_S2_contig8399.16531.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8399 263..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8399.16531.1

>prot_E_fasciculatus_S2_contig8399.16531.1 ID=prot_E_fasciculatus_S2_contig8399.16531.1|Name=mRNA_E_fasciculatus_S2_contig8399.16531.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=42bp
MDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRISA
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mRNA from alignment at E_fasciculatus_S2_contig8399:257..388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8399.16531.1 ID=mRNA_E_fasciculatus_S2_contig8399.16531.1|Name=mRNA_E_fasciculatus_S2_contig8399.16531.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=132bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8399:257..388+ (Ectocarpus fasciculatus EfasUO2)
CAGAGGATGGACCGATTCGTCCTGCAGTTCCACGTTCGGCAGTTCGGAAC
GAAAAAGCTAGCTCGTCGAAACCTCCATCAGCTTTGCAAGAGCATCACCA
AGCTCGCACCCACCAACCCACGAATATCGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8399:257..388+

>mRNA_E_fasciculatus_S2_contig8399.16531.1 ID=mRNA_E_fasciculatus_S2_contig8399.16531.1|Name=mRNA_E_fasciculatus_S2_contig8399.16531.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8399:257..388+ (Ectocarpus fasciculatus EfasUO2)
ATGGACCGATTCGTCCTGCAGTTCCACGTTCGGCAGTTCGGAACGAAAAA
GCTAGCTCGTCGAAACCTCCATCAGCTTTGCAAGAGCATCACCAAGCTCG
CACCCACCAACCCACGAATATCGGCG
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