mRNA_E_fasciculatus_S2_contig8398.16529.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8398.16529.1
Unique NamemRNA_E_fasciculatus_S2_contig8398.16529.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: Short-chain (alcohol dehydrogenase-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL5_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.300e-64
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 AAPGAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            AAPGAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGM+VAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW
Sbjct:  133 AAPGAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMAVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 238
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BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: SDR (family oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523MPW3_9GAMM)

HSP 1 Score: 147 bits (372), Expect = 1.700e-40
Identity = 71/103 (68.93%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            GAKI+L+TS+MGS+ADN SGG+YGYRMSKAALNAAG+SLA DL+G G++VAILHPG+VRT MTG SGL+D  ESVAG+ +RI+ L+L+NSG+FW   G+++PW
Sbjct:  118 GAKIVLLTSRMGSIADNDSGGSYGYRMSKAALNAAGMSLARDLRGRGIAVAILHPGYVRTDMTGQSGLLDVDESVAGLLERIDGLNLANSGSFWHSNGELLPW 220
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BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: SDR (family oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Z9G4R6_9DELT)

HSP 1 Score: 146 bits (368), Expect = 6.750e-40
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            GAK+ +I+S+MGS+ADNSSG  YGYRMSKAA+N AGVSLA DLK  G++VAILHPGWVRT MTG++GLVD  ES AG+  RIEEL L NSGTFW   G+++PW
Sbjct:  118 GAKVAIISSRMGSIADNSSGSRYGYRMSKAAVNIAGVSLARDLKPQGIAVAILHPGWVRTDMTGNTGLVDAKESAAGLIARIEELTLENSGTFWHMNGEILPW 220
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BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: Short-chain (dehydrogenase n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2D6IUG9_9GAMM)

HSP 1 Score: 146 bits (368), Expect = 6.750e-40
Identity = 72/103 (69.90%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            G KI L+TS+MGS+ADN SGG+YGYRMSKAALNAAG+SLA DL   G++VAILHPG+VRT MTG SGL+DT ESV GM +RI+EL+LSNSG+FW   G+++PW
Sbjct:  118 GGKIALVTSRMGSIADNDSGGSYGYRMSKAALNAAGMSLARDLHERGIAVAILHPGYVRTDMTGQSGLIDTDESVDGMLERIDELNLSNSGSFWHTNGELLPW 220
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BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: Short-chain (dehydrogenase n=3 Tax=unclassified Methylophaga TaxID=2629249 RepID=A0A1Y5DPH5_9GAMM)

HSP 1 Score: 142 bits (358), Expect = 2.370e-38
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    4 APGAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            A G+K+ L+TS+MGSMADN SGG+Y YRMSKAALNAAG SL+ DLK  G++V ILHPGWVRT MTG  GL+DT ESV G+  R++EL+L NSGTFW   G+V+PW
Sbjct:  120 ASGSKVGLVTSRMGSMADNDSGGSYAYRMSKAALNAAGKSLSIDLKPQGIAVGILHPGWVRTDMTGHGGLIDTDESVDGLLKRMDELNLENSGTFWHTNGEVLPW 224
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: Short-chain (dehydrogenase n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2E9QWS4_9DELT)

HSP 1 Score: 142 bits (357), Expect = 2.990e-38
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            GAK+ L+TS+MGS+ADN+SG  YGYRMSKAALN AGVSLAHDLK   +SVAILHPG+VRT MTG  G++D  +S AG+  RI+EL+L NSGTFW   G+V+PW
Sbjct:  118 GAKVALVTSRMGSIADNTSGSRYGYRMSKAALNMAGVSLAHDLKDRSISVAILHPGFVRTDMTGRQGMIDADQSAAGLIQRIDELNLDNSGTFWHTNGEVLPW 220
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BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: 3-oxoacyl-(Acyl-carrier (protein) reductase n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) TaxID=754477 RepID=I1YGV8_METFJ)

HSP 1 Score: 139 bits (350), Expect = 3.720e-37
Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            G+K+ LITS+MGS+ADN SGG+Y YRMSKAALNAAG SL+ DLK DG++VAILHPGWVRT MTG  GLVD  ES +G+  R+ +L L+N+GTFW   G+++PW
Sbjct:  122 GSKVGLITSRMGSIADNDSGGSYAYRMSKAALNAAGKSLSLDLKSDGIAVAILHPGWVRTDMTGHGGLVDADESASGLIARMTDLTLNNTGTFWHMNGEILPW 224
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BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: C-factor (n=8 Tax=Methylophaga TaxID=40222 RepID=A0A1E3GQM9_9GAMM)

HSP 1 Score: 139 bits (349), Expect = 5.240e-37
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            G+K+ +ITS+MGS+ADN SGG+Y YRMSKAA+NAAG SL+ DLK  G++VAILHPGWVRT MTG  GL+D  ES AG+ DR+ EL++ N+GTFW   G+V+PW
Sbjct:  122 GSKVGIITSRMGSIADNDSGGSYAYRMSKAAVNAAGKSLSIDLKPKGIAVAILHPGWVRTDMTGHGGLIDADESAAGLLDRMAELNIDNTGTFWHMNGEVLPW 224
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: Short-chain (dehydrogenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661DHQ1_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 7.390e-37
Identity = 67/103 (65.05%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            G+K+ +ITS+MGS+ADN SGG+YGYRMSKAA+NAAG SL+ DLK  G++VAILHPGWVRT MTG  GL+DT ES +G+  R+EEL+L N+G+FW   GD++PW
Sbjct:  122 GSKVGIITSRMGSIADNDSGGSYGYRMSKAAVNAAGKSLSIDLKPLGIAVAILHPGWVRTDMTGHGGLIDTDESASGLLMRMEELNLENTGSFWHTNGDLLPW 224
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Match: Short-chain (dehydrogenase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2A5BD53_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 2.070e-36
Identity = 65/103 (63.11%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:   10 GAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 318
            G+K+ +ITS+MGS+ADN SGG+YGYRMSKAA+NAAG SL+ DLK  G++V ILHPGWVRT MT   GL+DT E+ +G+  R++EL+L NSGTFW   GD++PW
Sbjct:  122 GSKVAIITSRMGSVADNDSGGSYGYRMSKAAVNAAGKSLSVDLKPQGIAVGILHPGWVRTDMTAHGGLMDTDEAASGLLARMDELNLENSGTFWHSNGDLLPW 224
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8398.16529.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Short-chain2.300e-6499.06alcohol dehydrogenase-like protein n=2 Tax=Ectocar... [more]
SDR1.700e-4068.93family oxidoreductase n=1 Tax=Gammaproteobacteria ... [more]
SDR6.750e-4068.93family oxidoreductase n=1 Tax=Myxococcales bacteri... [more]
Short-chain6.750e-4069.90dehydrogenase n=1 Tax=Chromatiales bacterium TaxID... [more]
Short-chain2.370e-3866.67dehydrogenase n=3 Tax=unclassified Methylophaga Ta... [more]
Short-chain2.990e-3866.99dehydrogenase n=2 Tax=Deltaproteobacteria TaxID=28... [more]
3-oxoacyl-(Acyl-carrier3.720e-3765.05protein) reductase n=1 Tax=Methylophaga frappieri ... [more]
C-factor5.240e-3764.08n=8 Tax=Methylophaga TaxID=40222 RepID=A0A1E3GQM9_... [more]
Short-chain7.390e-3765.05dehydrogenase n=1 Tax=Gammaproteobacteria bacteriu... [more]
Short-chain2.070e-3663.11dehydrogenase n=2 Tax=Gammaproteobacteria TaxID=12... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8398contigE_fasciculatus_S2_contig8398:2..1380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score189.9
Seed ortholog evalue5.4e-46
Seed eggNOG ortholog2880.D7FNL5
Model size733
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.cellular detoxification of aldehyde
EggNOG OGsCOG1028@1,KOG1611@2759
Ec32 ortholog descriptionshort-chain alcohol dehydrogenase-like protein
Ec32 orthologEc-01_005030.1
Cds size282
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.3337846-UTR-E_fasciculatus_S2_contig8398:1..401696842498.3337846-UTR-E_fasciculatus_S2_contig8398:1..40Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8398 2..40 +
1696842498.3780603-UTR-E_fasciculatus_S2_contig8398:968..13801696842498.3780603-UTR-E_fasciculatus_S2_contig8398:968..1380Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8398 969..1380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.3444731-CDS-E_fasciculatus_S2_contig8398:40..811696842498.3444731-CDS-E_fasciculatus_S2_contig8398:40..81Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8398 41..81 +
1696842498.3562567-CDS-E_fasciculatus_S2_contig8398:411..5061696842498.3562567-CDS-E_fasciculatus_S2_contig8398:411..506Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8398 412..506 +
1696842498.3661954-CDS-E_fasciculatus_S2_contig8398:822..9681696842498.3661954-CDS-E_fasciculatus_S2_contig8398:822..968Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8398 823..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8398.16529.1prot_E_fasciculatus_S2_contig8398.16529.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8398 41..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8398.16529.1

>prot_E_fasciculatus_S2_contig8398.16529.1 ID=prot_E_fasciculatus_S2_contig8398.16529.1|Name=mRNA_E_fasciculatus_S2_contig8398.16529.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp
MGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMSVAILHPGWVRT
RMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW*
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mRNA from alignment at E_fasciculatus_S2_contig8398:2..1380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8398.16529.1 ID=mRNA_E_fasciculatus_S2_contig8398.16529.1|Name=mRNA_E_fasciculatus_S2_contig8398.16529.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1379bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8398:2..1380+ (Ectocarpus fasciculatus EfasUO2)
GCTGCTCCTGGGGCAAAAATCATCCTGATCACGTCGAAGATGGGATCGAT
GGCGGACAACTCATCGGGCGGAGCTTACGGGTAGGATGCAGGGCTGGAGA
AACCCTATCTCATACCAAAGAGTCGAGGGTACCGGTGAAGCAAAAAGATA
TGTCAAAGAAACCGAACGAACGAACGAACGAACACGAGAACGCAGTTCTG
GGTGAGACTTTGTACATGACCAATCTCTCACCCTTTCGGCTTTCGGTTTC
AGTCCCATTTCGAGTAGCAACCTTTCTACCTCCGGGTGGACAATACTTAC
TAGGAGTTTTAGATGTGGGCGCCCGCCCATATACTTGTACGAACGATTCC
TTCCTGTGCGCGGGTTAACGCCCGATATCTTCTCGTCCTGTCGCATGATT
GTTTCACCAGTTATCGCATGTCCAAGGCCGCACTCAATGCTGCGGGGGTG
TCATTGGCCCACGATCTTAAGGGCGATGGCATGTCCGTTGCTATTCTTCA
CCCGGGTGAGACAGCTGAAATTGTAATTGTTCGAGGACCAATAACGGAAA
ACCGTCCCTTTCGCCTGGATTGCGCGAAATCTCATACCCAAAATTTTGTT
TTTGATTGAAAAAGCAGTCACCAGTTTTGTTTGTGATGTTCCGCCCCGGA
ATCCTTCAACATGAGTTAGGGATACAGAGACTACCGCACAAAGATGACAA
AGCTTGTGCATGTTTGTTCCGTCTAGACTCTCTCTAGTCTTGGTTCCATT
GTGACCCGTACTGTAACGGGAGTGTTTCGATCACTCATCAAAGCTGCACT
CTCCCGTCCGTGTATTTTCAGGCTGGGTGAGGACAAGGATGACCGGCGAC
TCCGGATTGGTTGACACCCACGAGTCGGTGGCGGGCATGACGGATAGAAT
CGAGGAGCTAGACCTATCGAATTCGGGAACATTTTGGGGGTTCAAGGGTG
ACGTCATCCCGTGGTGATGCTACGAACAGACAAGTTTTTTTGCTATGATG
GCTTGCGCTGCCCGCCAAGAAGGGCAGACTAGAGTTGAGTGACGTACAGT
ATTTTTGTTGCTGTGTAGACAACGCTCGGAACAGTGGGCGACATCAGATT
ACGACAGGGGTCGTCAAGAAGGACTCCCTATGCATACCAGAGACGAACCT
AGGGGATGGATGCCTTGCGGTCCTTGCAATGAGCTTTGGTCGCGCTGCCC
ATGAGCGAGCAGGGCTTGTCTGATGCCTAAACGTAGGTAGAGGAATTGAT
ATCGAAGCAGGCTGAGCGGTCCCATTTGTTTTGTGCTCAATGAGAAAAAT
GTGTTCAGCATCAAGGCGCCAGGTTGTTGCACGTTGCAGTACAACAGCAC
GATAGACCTGCTAACCGTGACGTCATGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8398:2..1380+

>mRNA_E_fasciculatus_S2_contig8398.16529.1 ID=mRNA_E_fasciculatus_S2_contig8398.16529.1|Name=mRNA_E_fasciculatus_S2_contig8398.16529.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=282bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8398:2..1380+ (Ectocarpus fasciculatus EfasUO2)
ATGGGATCGATGGCGGACAACTCATCGGGCGGAGCTTACGGTTATCGCAT
GTCCAAGGCCGCACTCAATGCTGCGGGGGTGTCATTGGCCCACGATCTTA
AGGGCGATGGCATGTCCGTTGCTATTCTTCACCCGGGCTGGGTGAGGACA
AGGATGACCGGCGACTCCGGATTGGTTGACACCCACGAGTCGGTGGCGGG
CATGACGGATAGAATCGAGGAGCTAGACCTATCGAATTCGGGAACATTTT
GGGGGTTCAAGGGTGACGTCATCCCGTGGTGA
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