mRNA_E_fasciculatus_S2_contig8397.16528.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8397.16528.1
Unique NamemRNA_E_fasciculatus_S2_contig8397.16528.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8397.16528.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 4.780e-61
Identity = 111/142 (78.17%), Postives = 122/142 (85.92%), Query Frame = 2 
Query:    2 VTAPQHSSFRRVSTGFGGISSSTRPAAASNFGGGSHGYGTAFTVSSSMNPEQAMANVTAVLGKDAAPGVFVYMLQEHMAEHVQLVFSPLFGGSASSTATPAVQSGRQSGGAPR*FTAGISVVWSYAIIGDEQLDFSLGMGQA 427
            VTAP+ SS RRVS  FG ISSS RPAAAS+FGG SHG GTAFTVSSSM PE AMA+V  VLG DAAP VF+Y+LQEHMAEHVQLVFSP+FGGSA + ATPAV SGRQSGGA R FTAGISVVWS+AIIGD+QL+FS GMG+A
Sbjct:  129 VTAPRASSTRRVSAEFGDISSSARPAAASSFGGVSHGDGTAFTVSSSMKPENAMASVMGVLGPDAAPRVFIYLLQEHMAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRA 270
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BLAST of mRNA_E_fasciculatus_S2_contig8397.16528.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E3_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.530e-58
Identity = 106/142 (74.65%), Postives = 118/142 (83.10%), Query Frame = 2 
Query:    2 VTAPQHSSFRRVSTGFGGISSSTRPAAASNFGGGSHGYGTAFTVSSSMNPEQAMANVTAVLGKDAAPGVFVYMLQEHMAEHVQLVFSPLFGGSASSTATPAVQSGRQSGGAPR*FTAGISVVWSYAIIGDEQLDFSLGMGQA 427
            VTAP+ SS RRVS  FG ISSS RP AAS+FGG SHG GT F VSSSM  E AMA+V  VLG DAAP VF+Y+LQEHMAEHVQLVF+P+FGGSA + ATPAV SGRQSGGA R FTAGISVVWS+AIIGD+QL+FS GMG+A
Sbjct:  131 VTAPRASSTRRVSAEFGDISSSARPVAASSFGGVSHGDGTDFMVSSSMKRENAMASVMGVLGPDAAPRVFIYLLQEHMAEHVQLVFAPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRA 272
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BLAST of mRNA_E_fasciculatus_S2_contig8397.16528.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.430e-43
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 2 
Query:  137 SSMNPEQAMANVTAVLGKDAAPGVFVYMLQEHMAEHVQLVFSPLFGGSASSTATPAVQSGRQSGGAPR*FTAGISVVWSYAIIGDEQLDFSLGMGQA 427
            SSM PE AMA+V  VLG DAAP VF+Y+LQEHMAEHVQLVFSP+FGGSA + ATPAV SGRQSGGA R FTAGISVVWS+AIIGD+QL+FS GMG+A
Sbjct:    2 SSMKPENAMASVMGVLGPDAAPHVFIYLLQEHMAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRA 98
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8397.16528.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.210e-26
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 2 
Query:  233 MAEHVQLVFSPLFGGSASSTATPAVQSGRQSGGAPR*FTAGISVVWSYAIIGDEQLDFSLGMGQA 427
            MAEHVQLVFSP+FGGSA + ATPAV SGRQSGGA R FTAGISVVWS+AIIGD+QL+FS GMG+A
Sbjct:    1 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRA 65
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8397.16528.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized4.780e-6178.17protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.530e-5874.65protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.430e-4378.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.210e-2681.54protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8397contigE_fasciculatus_S2_contig8397:3123..4271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size429
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.2716572-UTR-E_fasciculatus_S2_contig8397:3122..32081696842498.2716572-UTR-E_fasciculatus_S2_contig8397:3122..3208Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8397 3123..3208 -
1696842498.3034437-UTR-E_fasciculatus_S2_contig8397:4129..42711696842498.3034437-UTR-E_fasciculatus_S2_contig8397:4129..4271Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8397 4130..4271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.2826905-CDS-E_fasciculatus_S2_contig8397:3208..33071696842498.2826905-CDS-E_fasciculatus_S2_contig8397:3208..3307Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8397 3209..3307 -
1696842498.2928622-CDS-E_fasciculatus_S2_contig8397:4027..41291696842498.2928622-CDS-E_fasciculatus_S2_contig8397:4027..4129Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8397 4028..4129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8397.16528.1prot_E_fasciculatus_S2_contig8397.16528.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8397 3209..4129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8397.16528.1

>prot_E_fasciculatus_S2_contig8397.16528.1 ID=prot_E_fasciculatus_S2_contig8397.16528.1|Name=mRNA_E_fasciculatus_S2_contig8397.16528.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp
MNPEQAMANVTAVLGKDAAPGVFVYMLQEHMAEHVQLVFSPLFGGSASST
ATPAVQSGRQSGGAPR*
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mRNA from alignment at E_fasciculatus_S2_contig8397:3123..4271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8397.16528.1 ID=mRNA_E_fasciculatus_S2_contig8397.16528.1|Name=mRNA_E_fasciculatus_S2_contig8397.16528.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8397:3123..4271- (Ectocarpus fasciculatus EfasUO2)
CGTGACGGCGCCGCAGCACTCCTCTTTTCGCAGGGTGTCGACGGGCTTCG
GCGGCATTTCGTCGTCCACGCGCCCTGCCGCTGCGTCTAACTTCGGAGGT
GGCAGTCACGGCTACGGCACTGCTTTTACGGTGTCGTCGTCGATGAACCC
CGAACAGGCGATGGCTAACGTCACGGCGGTTTTGGGCAAAGACGCGGCCC
CAGGCGTCTTCGTTTACATGCTGCAGGAACATATGGCGGAACATGTGAGT
TGATTTTGTGTCCCTGTCAGAGAGAGTATTTACTATAAATATAATATACA
TCGTCTGAAAAAAACTAATCTTGTGCTTTTGTGTTTCTTGCGTAGATGCG
TGCCTTTTGTTGGTGGTGTTGGCTGAATTTTTGCCGAAGGGTTCAGACTG
TGAGTTTCCCACCATCCGGTTGGTCCATACATAGACGCACCACCTTCCGT
AGGTGGCACAATATGCCACACCCCCTGGGCCGATTTTCAAAGCTCGATTA
CTCCACGACCATGAAGATGCAGAAATGAAACGACACGTTTTCGGAGAGCT
CTCGACGAGATGGCTTCATTGCCGCCGTTTTCGTTGTGCCAGTTATTCTG
TGGCGGAGGTATCGAGCTTTGAAAACAGCTTCAGGGGGTGCGGTATCTTG
TGTCACCTACGGTACATAAGGGTAAGGCGTAGTGTGGAGGTGGAAACCAC
ACTACTACGTTATATTTGTCCTTGGTAACCCAGGATCGTCGCACACGCCG
CCTGGTGACACGAAGTAGGGGTCTTGTGTACATTGATGCCTTCTGCTCGC
CGTTCAGGCCGAGGATGATTGGTTGTGTTTGCACTCTCTGACATGCGTAG
ATTCAGCATTCCCATCGTCACAGACTAAATAGCGTAGAACCCACGACTTG
TCTCTCACGCGTCGCTGGATTTTCCGCCCCCGATCTTGTGCTATACGGAC
AATATATATCGCAGGTGCAGCTGGTTTTCTCCCCGTTGTTCGGCGGCAGC
GCGTCGTCCACGGCGACTCCTGCAGTTCAGAGCGGCAGGCAGTCCGGAGG
CGCTCCAAGATAATTCACCGCCGGCATCTCCGTGGTCTGGAGTTACGCCA
TCATCGGCGACGAACAGCTGGACTTCTCGCTGGGGATGGGGCAGGCGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8397:3123..4271-

>mRNA_E_fasciculatus_S2_contig8397.16528.1 ID=mRNA_E_fasciculatus_S2_contig8397.16528.1|Name=mRNA_E_fasciculatus_S2_contig8397.16528.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8397:3123..4271- (Ectocarpus fasciculatus EfasUO2)
ATGAACCCCGAACAGGCGATGGCTAACGTCACGGCGGTTTTGGGCAAAGA
CGCGGCCCCAGGCGTCTTCGTTTACATGCTGCAGGAACATATGGCGGAAC
ATGTGCAGCTGGTTTTCTCCCCGTTGTTCGGCGGCAGCGCGTCGTCCACG
GCGACTCCTGCAGTTCAGAGCGGCAGGCAGTCCGGAGGCGCTCCAAGATA
A
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