mRNA_E_fasciculatus_S2_contig8394.16526.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8394.16526.1
Unique NamemRNA_E_fasciculatus_S2_contig8394.16526.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8394.16526.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 3.810e-50
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 3 
Query:    3 VSPRGVLWNFAGAVVVRLLAMVLIPTVVSLVAGAWMGAGSADGQFVQLGHFRAALWALTLTRASAYLIHPVRAWLTALHDSVRDDRYLVGMRLQDHSDKAQ 305
            VSPRGVLWNFAGAVVVRLLAMVLIPTVVSLVAG WM A  ADGQFVQLGHFRAAL+ALTLTRASAYLI PVRAWLTALHDSVRDDRYLVGMRLQDHSDK+Q
Sbjct: 1184 VSPRGVLWNFAGAVVVRLLAMVLIPTVVSLVAGTWMDAYGADGQFVQLGHFRAALFALTLTRASAYLIQPVRAWLTALHDSVRDDRYLVGMRLQDHSDKSQ 1284
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8394.16526.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.390e-15
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 3 
Query:    3 VSPRGVLWNFAGAVVVRLLAMVLIPTVVSLVAGAWMGAGSADGQFVQL 146
            VSP GVLWNFAGAVVVRLLAMVLIPTVVSLVAGAWMGA  A GQFVQ+
Sbjct: 1587 VSPHGVLWNFAGAVVVRLLAMVLIPTVVSLVAGAWMGADGAYGQFVQV 1634
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8394.16526.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
RING-CH-type3.810e-5093.07domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RING-CH-type3.390e-1589.58domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8394contigE_fasciculatus_S2_contig8394:4083..6215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score148.7
Seed ortholog evalue1.9e-33
Seed eggNOG ortholog2880.D8LBR1
Model size502
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
Exons3
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
Cds size378
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.093551-UTR-E_fasciculatus_S2_contig8394:4082..41441696842498.093551-UTR-E_fasciculatus_S2_contig8394:4082..4144Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8394 4083..4144 -
1696842498.1547198-UTR-E_fasciculatus_S2_contig8394:6153..62151696842498.1547198-UTR-E_fasciculatus_S2_contig8394:6153..6215Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8394 6154..6215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.1145885-CDS-E_fasciculatus_S2_contig8394:4144..42851696842498.1145885-CDS-E_fasciculatus_S2_contig8394:4144..4285Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8394 4145..4285 -
1696842498.125694-CDS-E_fasciculatus_S2_contig8394:5271..54271696842498.125694-CDS-E_fasciculatus_S2_contig8394:5271..5427Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8394 5272..5427 -
1696842498.134889-CDS-E_fasciculatus_S2_contig8394:6072..61531696842498.134889-CDS-E_fasciculatus_S2_contig8394:6072..6153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8394 6073..6153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8394.16526.1prot_E_fasciculatus_S2_contig8394.16526.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8394 4145..6153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8394.16526.1

>prot_E_fasciculatus_S2_contig8394.16526.1 ID=prot_E_fasciculatus_S2_contig8394.16526.1|Name=mRNA_E_fasciculatus_S2_contig8394.16526.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
MVLIPTVVSLVAGAWMGAGSADGQFVQLGHFRAALWALTLTRASAYLIHP
VRAWLTALHDSVRDDRYLVGMRLQDHSDKAQQADASPDSESAGYVARARA
MAATPGNTAVAPAAAAAAAAAADVR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8394:4083..6215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8394.16526.1 ID=mRNA_E_fasciculatus_S2_contig8394.16526.1|Name=mRNA_E_fasciculatus_S2_contig8394.16526.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2133bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8394:4083..6215- (Ectocarpus fasciculatus EfasUO2)
AGGTTTCCCCCCGCGGGGTGTTATGGAATTTCGCTGGCGCCGTAGTCGTT
CGGCTGTTGGCCATGGTTCTTATCCCTACGGTGGTCTCTCTTGTGGCTGG
CGCCTGGATGGGTGCAGGAAGCGCGGACGGGCAGTTTGTGCAGGTGCGAG
CGAACCTGGCATGCTTGGCTAGAGTTTCGTCGTCGTTTTCGTTGATGATG
GCGATGGCGATGGTGGGTGGGGTTATACTTACTGAAGCACCCAGCACTCC
CACGTGTAGCTCTGCTGAAGCTGAGATTCGCCACCTTGTACACACTCTTT
TCCTGGTGCAAACTGGCAGGGAGCAAAGTCTTTACACCACGCCTTTGTAC
ACAGAGAAAAATATGCGATCTACGCGTGTTTTTCATGCCATGCCTTCCCT
GAGCCTCTTGCGTTCACGCATAAGGCGTTTCTGTGTACAAAGGTCGCCGA
CTATCTCTGTGTTTTGCCTTTTCTGAACGCTGGTACTGCTGTGTACTTGG
GGCGATGGTCAAGACGAGGGACCGCTCCTCGAGAGCTGAGGTTGCTGGTT
TTAGTTTTTGCGGTGCCGCTGCCGTTGTTGCCACTTAGCAAGAGTTGTGG
TCGCTCCTCTCGTCCATGGCACACACTAAAGTACCGCGCCCCTTCCCTCC
CCCCCTCCCCTACAACTCGTTTCTGCTTCTCGTTTACCGCTGCGACTGCC
GCTTACCGTCGCCGTTGCCATCTCTGGAAATAACCGGCCCCTTGTTCGAA
CGGCGAAACAAAAACCACCATCACCGACAACACAACAGTTGGGACACTTT
AGGGCGGCCCTGTGGGCCCTCACGCTCACCAGGGCCTCGGCCTACCTCAT
CCACCCCGTCCGGGCTTGGCTGACGGCTCTACACGACAGCGTTCGAGACG
ACCGCTACCTGGTGGGGATGAGGCTGCAGGACCACTCGGACAAGGTATGC
TATCTCCTGCAAGCCTCGTGTTCCGGACATGCGTCGATAGAGAATCAGCA
TGTACCCCTCTATACCCCTCTATAGGAAAATCGAAAATCGTGCGTGATGT
GTTGTCGATCTCTTCGGCTAGTTTTTGCTTCCGCCGCACCGCCGTTTGTT
GTGTCCGCACCGCATCCACATTTTTGGTAAAAGGTAACGCGTTTTCACTT
ACATACCGAGCGTACCCGTATGGCTGTAATGTGATACGATCTGACGGGAC
CCCCAAGACCCCCAGAGGAGGCATGTCGCAGTACGCTGTCGTTGGTTTTT
GGAGGCTGCTGCGCAGTCACTCTGGGATGGTCAAAGAGCGTTGAAAACCG
ATCATCAAGATGTGCATCATGTCTCCCACGTCATGTCGACTGGCTGGCAA
CGCACCCGATGGTGTGCATACATGCACACTGTACGAGAGTAACGAGATTC
GGGTCAGTTATCTACAACAGGCAGGCGTGGCACGACAAGTTGCTGCTTCT
GTTACCTTCTTTGTCTGCCTTGTGCGAGACCAATCTCACGGAAGATTAGA
GCACCCGCCTGCGACTGCTCTCGGACATGGAGGAGAGAGGTGGCGGAAGG
ATTGCCTTGACACGTACATGCAGCTTGGAGTTGGCAGTCTCGGAATTTAG
ATAATTTAGATGATCTGGAGACGCCGGCCTCGTTGACGTTGAGTTTGGTT
GGTATGCTCAGTACGGAATAAGGAGAGCGTAAGGGAAAGAGAACGGCGAG
GTGCCCAATACATCTTCGACCTCATCTCTGACGGCGACGACGACGGCGGC
GATGATGATGACGTACAGTATAAGTGAGCAGGCCGTATTTCAATTCAACT
GATGGGGCTTCGAGTTACAACTTGGTTTGTTCGTTGTGACGATGATACTG
ACAGCCCCCCCCCCCCACCCACCCCGTCTGTGTTGCAATCCCGTCACCCC
CGCGCGGGTTGTTTGTTTCCTCCGGAGAAGGCCCAGCAAGCTGATGCCAG
CCCTGACAGCGAGAGCGCAGGATACGTGGCGAGAGCAAGGGCAATGGCGG
CGACGCCCGGTAACACAGCTGTTGCTCCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGATGTTCGTTGATCTCGCACCCACCCAACGAACGGGCAGGC
GCTACGGAGTGAAGGGGGTAGCGGAAAGGGAGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8394:4083..6215-

>mRNA_E_fasciculatus_S2_contig8394.16526.1 ID=mRNA_E_fasciculatus_S2_contig8394.16526.1|Name=mRNA_E_fasciculatus_S2_contig8394.16526.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8394:4083..6215- (Ectocarpus fasciculatus EfasUO2)
ATGGTTCTTATCCCTACGGTGGTCTCTCTTGTGGCTGGCGCCTGGATGGG
TGCAGGAAGCGCGGACGGGCAGTTTGTGCAGTTGGGACACTTTAGGGCGG
CCCTGTGGGCCCTCACGCTCACCAGGGCCTCGGCCTACCTCATCCACCCC
GTCCGGGCTTGGCTGACGGCTCTACACGACAGCGTTCGAGACGACCGCTA
CCTGGTGGGGATGAGGCTGCAGGACCACTCGGACAAGGCCCAGCAAGCTG
ATGCCAGCCCTGACAGCGAGAGCGCAGGATACGTGGCGAGAGCAAGGGCA
ATGGCGGCGACGCCCGGTAACACAGCTGTTGCTCCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGATGTTCGTTGA
back to top