mRNA_E_fasciculatus_S2_contig8394.16525.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8394.16525.1
Unique NamemRNA_E_fasciculatus_S2_contig8394.16525.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8394.16525.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8394contigE_fasciculatus_S2_contig8394:2728..4065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1338
Hectar predicted targeting categoryother localisation
Exons1
Cds size675
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.035529-UTR-E_fasciculatus_S2_contig8394:2727..28221696842498.035529-UTR-E_fasciculatus_S2_contig8394:2727..2822Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8394 2728..2822 +
1696842498.0621626-UTR-E_fasciculatus_S2_contig8394:3497..40651696842498.0621626-UTR-E_fasciculatus_S2_contig8394:3497..4065Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8394 3498..4065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.049585-CDS-E_fasciculatus_S2_contig8394:2822..34971696842498.049585-CDS-E_fasciculatus_S2_contig8394:2822..3497Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8394 2823..3497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8394.16525.1prot_E_fasciculatus_S2_contig8394.16525.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8394 2823..3497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8394.16525.1

>prot_E_fasciculatus_S2_contig8394.16525.1 ID=prot_E_fasciculatus_S2_contig8394.16525.1|Name=mRNA_E_fasciculatus_S2_contig8394.16525.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
MGFLPRALKSTQDHNKTHANMTLTPHDKTRMAAVVPETTDSVYISGHQSM
YVASPQHNNSSRHKLNTFGCWVCMTTTTATVPPHGHPTEGAKRTESKVLL
HRRPTLSPGHFWGLGPAYKAGSRRRKHRKHPQTCSFSLVRSDHCPLPRGS
PTHTEAFSTSAKKAKPRAAAAAAAAWAAWAAMHVQISYVWDRKAIPTFPP
PPHSPSASLANARVYYLIHHSGYG*
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mRNA from alignment at E_fasciculatus_S2_contig8394:2728..4065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8394.16525.1 ID=mRNA_E_fasciculatus_S2_contig8394.16525.1|Name=mRNA_E_fasciculatus_S2_contig8394.16525.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1338bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8394:2728..4065+ (Ectocarpus fasciculatus EfasUO2)
GGACTGCTGTGGGCCAACCAGACTAGCGACGACAAAAACTCAACAGCAAA
ACACACACGGGTGCCAACAAACAGAAATACACCCCGCACCCTCCAATGGG
CTTCCTCCCACGCGCCCTCAAAAGTACACAAGACCACAACAAAACACACG
CAAACATGACACTCACTCCCCACGACAAAACACGGATGGCTGCTGTCGTT
CCTGAAACTACTGACAGCGTATACATCTCGGGGCATCAATCGATGTATGT
AGCGTCGCCTCAGCACAACAATTCATCGCGACACAAACTGAACACCTTTG
GGTGCTGGGTATGTATGACGACGACGACGGCGACGGTGCCCCCCCATGGC
CACCCGACAGAAGGAGCGAAGCGAACTGAATCGAAAGTCCTTCTGCACCG
GCGACCGACATTGTCGCCCGGCCACTTTTGGGGCCTCGGGCCGGCATACA
AGGCCGGGAGCCGCCGCCGAAAACACCGAAAACACCCACAAACCTGCTCT
TTCTCTCTCGTTCGCTCTGATCACTGTCCTCTACCTCGAGGCTCCCCTAC
GCACACCGAAGCGTTTAGCACCAGCGCAAAGAAGGCGAAACCAAGAGCAG
CAGCAGCAGCAGCAGCAGCATGGGCAGCATGGGCAGCCATGCACGTACAA
ATATCTTACGTTTGGGATCGAAAAGCCATACCGACCTTTCCCCCCCCCCC
CCATTCTCCTTCGGCCAGCCTCGCAAATGCGAGGGTCTATTATCTAATCC
ACCACTCTGGTTATGGGTGACAACGACTACACCCGCAAACACTGCGCGTT
CCCTCGAACCAGGAAGCAGACCGATCCACGTTGTGATCGCAAACTCTCAC
GGCCAACGCAGAGAACGAAATGGCGTCACGCCGTACATCTCTCCCTCAAA
CAACGCCTTCGCAGATCGGACAAAGGAAAATATACCAACGCCGCTCGTAG
TTTGCTTCCATTGTAGCCCCGTCGGATCACGCGTGAACGGTTTCCATTGT
TCACATCGTCATCAGCGTATTCTAAGGCGGGGCTAATGGTTCTCACACTT
CCCTGCGACAGGAGAAATTCTACACCACAGTTTGTTTTTTTGGTTTGTTT
CACCATGCAAAATCTTTAGCGTTTGCTCCATACGCATCACACTCGCTCTC
ATCTCGCTGGCGCGCACTCGCATACAGCCAGACTCTGTGGGCACACCAAG
CCACCGAGAGTTTGTATCCAACACAAACATGCTCCCTCCCTCCCCTGATT
TGGCTGATGTATTTCTTGATTATCTTTCCTCGCGGAGGGGGTCCCCGGTG
AATGTGGGGCCCGGACGCAGGCGACAACGACTCTTGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8394:2728..4065+

>mRNA_E_fasciculatus_S2_contig8394.16525.1 ID=mRNA_E_fasciculatus_S2_contig8394.16525.1|Name=mRNA_E_fasciculatus_S2_contig8394.16525.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8394:2728..4065+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCTTCCTCCCACGCGCCCTCAAAAGTACACAAGACCACAACAAAAC
ACACGCAAACATGACACTCACTCCCCACGACAAAACACGGATGGCTGCTG
TCGTTCCTGAAACTACTGACAGCGTATACATCTCGGGGCATCAATCGATG
TATGTAGCGTCGCCTCAGCACAACAATTCATCGCGACACAAACTGAACAC
CTTTGGGTGCTGGGTATGTATGACGACGACGACGGCGACGGTGCCCCCCC
ATGGCCACCCGACAGAAGGAGCGAAGCGAACTGAATCGAAAGTCCTTCTG
CACCGGCGACCGACATTGTCGCCCGGCCACTTTTGGGGCCTCGGGCCGGC
ATACAAGGCCGGGAGCCGCCGCCGAAAACACCGAAAACACCCACAAACCT
GCTCTTTCTCTCTCGTTCGCTCTGATCACTGTCCTCTACCTCGAGGCTCC
CCTACGCACACCGAAGCGTTTAGCACCAGCGCAAAGAAGGCGAAACCAAG
AGCAGCAGCAGCAGCAGCAGCAGCATGGGCAGCATGGGCAGCCATGCACG
TACAAATATCTTACGTTTGGGATCGAAAAGCCATACCGACCTTTCCCCCC
CCCCCCCATTCTCCTTCGGCCAGCCTCGCAAATGCGAGGGTCTATTATCT
AATCCACCACTCTGGTTATGGGTGA
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