mRNA_E_fasciculatus_S2_contig839.16519.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig839.16519.1
Unique NamemRNA_E_fasciculatus_S2_contig839.16519.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP92_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 4.720e-104
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:   10 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRGDD 453
            MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRGDD
Sbjct:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRGDD 148
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Ribosomal (protein S19e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNM6_9STRA)

HSP 1 Score: 228 bits (580), Expect = 2.510e-74
Identity = 110/148 (74.32%), Postives = 123/148 (83.11%), Query Frame = 1 
Query:   10 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRGDD 453
            MA YEP+G++VRDVA A FIKAYA+HLKNTGR ELP W DLVKT   KE+ PYD DWYY+RAAAVARKVYLRPGRGVGGL+KAFG+  RRGT TN H  A+ G+IRH+LQQLE + VVEK E GGR VTR GQQDLDRIAGAV RGD+
Sbjct:    1 MATYEPQGVSVRDVAPAKFIKAYADHLKNTGRFELPPWVDLVKTGTQKELAPYDPDWYYVRAAAVARKVYLRPGRGVGGLTKAFGSVERRGTRTNHHARASGGLIRHILQQLETMSVVEKTETGGRKVTREGQQDLDRIAGAVSRGDE 148
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX61_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.100e-59
Identity = 95/146 (65.07%), Postives = 111/146 (76.03%), Query Frame = 1 
Query:   10 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRG 447
            M +YE RGITVRDVA A FI+AYA HLKN+ R E+P W DLVKT  HKE+ P D DWY++RAA++ARKVYL+PG GVG L K +G + RRG    T + AA G+IR VLQQLE  KVVEK  +GGR +TRVGQQDLDRIAG V RG
Sbjct:    1 MVEYEARGITVRDVAPAVFIEAYALHLKNSDRFEIPKWTDLVKTGVHKELGPTDDDWYFVRAASIARKVYLKPGVGVGALRKWYGGQYRRGARAKTFQRAAGGLIRSVLQQLEETKVVEKTASGGRRITRVGQQDLDRIAGQVARG 146
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW04_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.120e-57
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 1 
Query:   10 MADYE--PRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEK----MENGGRTVTRVGQQDLDRIAGAVVRG 447
            MA+Y+  PRG+TVRDV AADFIKAYAEHLK +G++ELPSW D+VKTA  KE  P D DWY++RAA++ARKVYLR   GVG L K +G  ARRG      + A+ G+IRH+LQQLE +KVV+K    +  GGR +T  GQQDLDRIAG VVRG
Sbjct:    1 MAEYDETPRGVTVRDVKAADFIKAYAEHLKRSGKIELPSWWDIVKTASFKEYSPTDPDWYFVRAASIARKVYLRQYTGVGALKKVYGGAARRGVRHQRFQKASGGLIRHILQQLEEMKVVDKCPEGVNKGGRKITSHGQQDLDRIAGQVVRG 152
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Uncharacterized (protein n=2 Tax=Oomycota TaxID=4762 RepID=K3WSU7_GLOUD)

HSP 1 Score: 185 bits (470), Expect = 1.590e-57
Identity = 95/151 (62.91%), Postives = 113/151 (74.83%), Query Frame = 1 
Query:   10 MADYE--PRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEK----MENGGRTVTRVGQQDLDRIAGAVVR 444
            MA+YE  PRG+TVRDV AADFIKAYAEHLK +G++ELPSW D+VKTA  KE  P D DWY++RAA++ARKVYLR   GVG L K +G  ARRG      + A+ G+IRH+LQQLE +KVVEK    +  GGR +T  GQQDLDRIAG VVR
Sbjct:    1 MAEYEETPRGVTVRDVKAADFIKAYAEHLKRSGKIELPSWWDIVKTASFKEYSPNDPDWYFVRAASIARKVYLRQYTGVGALKKVYGGAARRGVHRQHFQQASGGLIRHILQQLEEMKVVEKCPEGVNKGGRKITSHGQQDLDRIAGQVVR 151
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Hypothetical (protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1Z1P9_TRICV)

HSP 1 Score: 184 bits (466), Expect = 6.440e-57
Identity = 93/148 (62.84%), Postives = 108/148 (72.97%), Query Frame = 1 
Query:   10 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRGDD 453
            MA+ E RGI VRDVAA DFI AYAEHLKN+ + ELP W + VKT   KE+ PY  DWYYIRAA++ARKVYLRPG GVG L K +G   RRGT T   + A +GIIR VL QLE +KV E++  GGR +TRVGQQDLDRIAG V R  +
Sbjct:    1 MAEDEARGICVRDVAAKDFIAAYAEHLKNSDKFELPVWAEQVKTGVFKELAPYGDDWYYIRAASIARKVYLRPGLGVGQLQKWYGGSYRRGTRTEHFRKANSGIIRSVLIQLEGMKVTEQLPGGGRRMTRVGQQDLDRIAGTVFRASE 148
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1BJT9_PIG)

HSP 1 Score: 182 bits (461), Expect = 8.010e-57
Identity = 87/94 (92.55%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:  157 MCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAV 438
            MCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTH+PA+TGIIRHVLQQLE+LKVVEKM+NGGR ++RVGQQDLDRIAGAV
Sbjct:    1 MCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKVVEKMDNGGRQISRVGQQDLDRIAGAV 94
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIR0_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.340e-56
Identity = 89/141 (63.12%), Postives = 112/141 (79.43%), Query Frame = 1 
Query:   10 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAG 432
            MAD +  G TV+DV++  F+K YAEHLK  G++ELPSW DLVKTA HKE+CP+DQDWYYIRAA++AR VYLRP  G+GGL K +G++ARRGT+T     A +G+IRH+L+QLEA+ VVEK +  GR +T  GQQDLDRIAG
Sbjct:    1 MADKQ--GTTVKDVSSHAFVKMYAEHLKRQGKIELPSWVDLVKTATHKELCPFDQDWYYIRAASIARHVYLRPHTGIGGLQKKYGSRARRGTLTEHFHKANSGLIRHILKQLEAIGVVEK-DGKGRIITSTGQQDLDRIAG 138
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L966_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.840e-56
Identity = 89/141 (63.12%), Postives = 108/141 (76.60%), Query Frame = 1 
Query:   22 EPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVR 444
            E RGI VRDV+A  FIKAYAEHLKN+ + +LP W D +KT+   E+ PY  DWYYIRAA++ARKVYLRPG G+G L K +G   RRG  T   + AA+G+IR VL QLE +KVVEK+E+GGR VT VGQQDLDRIAG+V+R
Sbjct:    4 EARGICVRDVSAVSFIKAYAEHLKNSDKFDLPVWADTIKTSVVNELAPYGDDWYYIRAASIARKVYLRPGIGIGQLQKWYGGAYRRGARTEHFRKAASGVIRSVLLQLEEMKVVEKLESGGRRVTTVGQQDLDRIAGSVIR 144
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BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3G6_PHATC)

HSP 1 Score: 182 bits (461), Expect = 3.710e-56
Identity = 92/141 (65.25%), Postives = 107/141 (75.89%), Query Frame = 1 
Query:   22 EPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVR 444
            E RGI VRDVAA DFIK+YAEHLKN+ + +LP W D VKTA  KE+ PY  DWYYIRAA++ARKVYLRPG G+G L K +G   RRGT +   + AA+GIIR VL QLE +KVVEK+  GGR V+ VGQQDLDRIAG V R
Sbjct:    4 EARGICVRDVAATDFIKSYAEHLKNSDKFDLPVWSDTVKTAVFKELAPYGDDWYYIRAASIARKVYLRPGVGIGQLQKWYGGSYRRGTRSEHFRKAASGIIRSVLIQLEEMKVVEKVGTGGRRVSVVGQQDLDRIAGTVFR 144
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig839.16519.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.720e-104100.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP92... [more]
Ribosomal2.510e-7474.32protein S19e n=1 Tax=Tribonema minus TaxID=303371 ... [more]
Hypothetical1.100e-5965.07protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized1.120e-5761.84protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized1.590e-5762.91protein n=2 Tax=Oomycota TaxID=4762 RepID=K3WSU7_G... [more]
Hypothetical6.440e-5762.84protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A... [more]
Uncharacterized8.010e-5792.55protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1... [more]
Hypothetical1.340e-5663.12protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Hypothetical1.840e-5663.12protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]
Predicted3.710e-5665.25protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig839contigE_fasciculatus_S2_contig839:5318..9828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score301.6
Seed ortholog evalue2e-79
Seed eggNOG ortholog2880.D7FP92
Preferred nameRPS19
Model size476
KEGG koko:K02966
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000462,GO:0000956,GO:0001906,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0002548,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0006997,GO:0007000,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016477,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019838,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030312,GO:0030490,GO:0030595,GO:0031347,GO:0031348,GO:0031349,GO:0031369,GO:0031503,GO:0031640,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032103,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035821,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042330,GO:0042592,GO:0042742,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045088,GO:0045089,GO:0045184,GO:0045595,GO:0045824,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050657,GO:0050658,GO:0050727,GO:0050728,GO:0050729,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0050900,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051259,GO:0051262,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0060263,GO:0060264,GO:0060265,GO:0060266,GO:0060267,GO:0060268,GO:0060284,GO:0060326,GO:0061844,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071674,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080134,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097529,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons3
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsCOG2238@1,KOG3411@2759
Ec32 ortholog descriptionRibosomal protein S19e
Ec32 orthologEc-08_000310.1
Cds size447
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842497.512437-UTR-E_fasciculatus_S2_contig839:5317..53371696842497.512437-UTR-E_fasciculatus_S2_contig839:5317..5337Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig839 5318..5337 -
1696842497.5619838-UTR-E_fasciculatus_S2_contig839:9819..98281696842497.5619838-UTR-E_fasciculatus_S2_contig839:9819..9828Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig839 9820..9828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842497.5281816-CDS-E_fasciculatus_S2_contig839:5337..54361696842497.5281816-CDS-E_fasciculatus_S2_contig839:5337..5436Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig839 5338..5436 -
1696842497.540782-CDS-E_fasciculatus_S2_contig839:8267..84281696842497.540782-CDS-E_fasciculatus_S2_contig839:8267..8428Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig839 8268..8428 -
1696842497.5511584-CDS-E_fasciculatus_S2_contig839:9632..98191696842497.5511584-CDS-E_fasciculatus_S2_contig839:9632..9819Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig839 9633..9819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig839.16519.1prot_E_fasciculatus_S2_contig839.16519.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig839 5338..9819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig839.16519.1

>prot_E_fasciculatus_S2_contig839.16519.1 ID=prot_E_fasciculatus_S2_contig839.16519.1|Name=mRNA_E_fasciculatus_S2_contig839.16519.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=149bp
MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEM
CPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPA
ATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRGDD*
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mRNA from alignment at E_fasciculatus_S2_contig839:5318..9828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig839.16519.1 ID=mRNA_E_fasciculatus_S2_contig839.16519.1|Name=mRNA_E_fasciculatus_S2_contig839.16519.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4511bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig839:5318..9828- (Ectocarpus fasciculatus EfasUO2)
AGGCACACCATGGCGGACTACGAGCCTCGAGGAATCACCGTGCGCGATGT
CGCCGCGGCTGACTTCATCAAGGCGTACGCCGAGCACCTGAAGAACACCG
GCCGTGTCGAGCTGCCCTCGTGGTGCGACTTGGTCAAGACCGCTCCCCAC
AAGGAGATGTGCCCTTACGACCAGGACTGGTACTACATCCGCGCCGGTGA
GAAGAGGAGCAGCGTCGAGATTGTGAGGGGGGTGGTGGGATGCTTGCCCT
TGCACGATGCTCTGTGCGGCGTTGGTCGCGTGGGCAGCGTTTTATGTCGC
CCGGGGATCAGCTGGTGTAGTGGCGTTGTTTTTTGTGTTCGCAGCAGTGT
ACCAAAACGACAGGTTTAGCTTTTGTTACGATAGGTACCGTAGGATACCA
CACCCCCTGCCCAGTCTTACCGCTCGTTTCCTCCACCACCGAGAGAGGAT
GCAGTATGCCACATTTTACAAATCGAGCGACACTGCTGTTTCGTGAAGCT
CTGGAACAGATGATTCCAACGCCTCGATTTCCGACGCCGCCGAGCTTTAT
TGTTTGCTGGTGTGGAGTAATTAAAGCTTTGAAAGCCGGTGCACGGGGGA
GGGCACTGCAACGTACGGCAGGTTGTTGCTCTCGGGGCGACAGAACTACT
CCTGTTGTGGCTGAGACCAGACCTCCCCGCTATTGCCATTGGGACATTGA
GAGCAGTAACGATGGACCTCTTGATGGGACAAGTTGATTGCTGTTGCATT
CGCGACATCAAGGGCAACTCTACTAAATTTTGTTTTCGTCGGAAACAGCC
CTTTGGCAGTGGCATCGTTGGAGTTTCTGAGATTTATGATGGTGTAGTTT
TGGATTTTGCCCCAAGTTGACTTGGCTTGGACAGCAGTGCAGTTTGGCCT
CTTGTGCGTGGGCTCTTGAATGCGCTGTCGTAGCGTTGGAGCCGGTGCGA
ACTGTGGTTTACCCACGCGCAGACAAGCTCACAGGCCATAGTCTATCTCT
AGTTCCTCGTCGGGGATTGGTCTGCTTTCGACGCTCCCTCACCTGCTCTC
TTGTTCGAGAGGTGTTGCGTAACTTCCCGGTGATACACAACTGTTTTCTG
CTTGCCCGCACCGCTCTTGCGCCGTACGCAAGAACATGCGTTTTGTGCTC
CTCCCCTCTTACAAATTTATTCTCGATTGATCATCGAAACGAAGCAAGTG
GTCACCTGCAACAACTGCACAGCAGATCCGCGCACCAAAAGCTTATCTTC
GAAAAACTGAAACTTAACCCGTTCCGATCGTGTCCAATTCACCACCGCTC
GCCCGTGCTTCGCGCCTTTCCTCGGCCTGCCGTGACGTTCGCCTACCCCG
CCCCTGCTGTTTGCTCCCTTGCTTTGGGTCTCTGCTGTCCCTCGTTGCAG
CTGCGGTGGCGCGCAAGGTGTACCTTCGCCCCGGGCGCGGCGTCGGTGGC
CTGAGCAAGGCTTTCGGGACCAAGGCACGCCGGGGGACCATGACCAACAC
GCACAAGCCGGCGGCGACGGGCATCATCCGCCACGTGCTCCAGCAGCTCG
AGGCACTCAAGGTGGGAAAAGGCAAAAAAGAACAAGAAAAGAAGGATCAA
CGCGACTTGCGAAAAAAGATTCATAGCCCCAAATACAACGACCAGTCACA
CCGCCGTTGTACTTGCGCTGTTCGTCTTCCTCCACATTTTTGCTGCGTAT
TTGTGCACGCAAAAACGTTGTTTGGAGTGCACGCCTGCAGCTTCCTGGTG
GTGATGCCACTGTTGCTATGTTGTTTGCTGCATTTCCGGAGTAGAAGGAA
GCCCTGCTGTGGTTTGGTTATTTCTGTGGAAAATGTTTGCTTCGGAGTTG
GTCTGTGCGCAAAAGGGGGAGAGGAAGAGGGTGCTGTGAAGAAGTTTCTA
TTGATATGATCATCAAATGATTATGAAACAAGAACCTCCTACTCATTCTG
AGCGCCCTTTGCCTCTGTTCTCGGATGCAATACCTTAGCAGCAGCAGCAG
CAGCACATTCGGTGCACCTTGCCCCCCGCTCATGTGTGTCCCCCCTGAGG
GTGGCACATCGTGATCATTTATTGGAAGAGGTGTTTGTGAACCCATGTGT
CGAGAGTACCACACCCAAGGATACGTGCGTGTTTGTACATCGTTTGCACG
CCCATCCTCTCGCCAGACCACTCCAAGTAACGTGATAATGGGGATGCTCT
GTCATATCTGCATTTGCTTCGCTGTAAAAACTCCATCCAGTTGTTTGTAC
CGAAGACACCAGCGTTGATCGTGCAACGTCATCATCATCGAACAACTTGA
GACATAGTCACACGCACTCGTTCCTGCGATAAAAAAACGTGTTTTTTTCT
TTCTTCGCTTCCGTGGTCACGACACCTCTTCCTGCTCTGGTGTTTCCTTT
CCGTCTTTGAGAGAGGTGCAACATCTTGAAAGCGTGCAGCCCTTGAGTGT
CGGCAGGAGCGGCAGTCGGAGGCATCGAGGTGCCAGCAGCATCGGCCACT
ACGGAACAGTGTTGATTATCCCCACCAGAAACATCTTGTTCGGGATGGCC
AAGCAGGCCGCCTGCCTCGCCATCCCGAAGAAGGTTATCCTGTTGGGGAG
AATCAAGACTGTTGCGAACTGGCCGATGCTGCTGGCGCCTTGGTGTCTGC
TGCTGCTGCAAGCATTCTTTGGTGGATCGCGTGCATTTCACATATTCGCG
GGCGTCGCCAGTATAATTAAACTCTACAACCGCTGTTCCGGTACACCAAA
GTTTGCCGGCTTAATGTTGTCTTTGGGCGTCAAGCGCCGTGGCAGGAGGG
GGTGGGACTTGATGATGCTCCTCAATTTCTTGATATTATTGGTGTACTGC
GTGGATGTTGTCCACTTCGACGGGTCACCGTATTCCCACATTCCCCGCCC
GTCGGTGAAGTGTGACCTCTCCCCCCACACACACATTATGTAATCCCCCC
CGGGGCAAAAGCGACTGGTCCCCGCGTCACTTGATTGGCGTCCCCGTGGA
GCGGGTTGAATGCCGCGCAACAGGATAGGAACAAAGTTGCGAAGGAAACA
ACGTGCCCGTAGGTGGTGTGAGAACGACGCGTCCCTTGACGCCACCTAAC
GTGTTGCCTGCTCTTTGGTTTGCTATTTCCGTGGCGTGAAGATACTGTAG
GCGTGTGATGGTGCTGAAATGGCTTGGGGAGCGTGATGCTCGCACACTGG
CCAATATTCTCAGCATTGTTCCACAGGCGCTGGAAGGTTCAACTACCCTA
CACGATGCGTGAAGGGGAAGGAAAAGGCCTTCATGCGCGCGGCAGAACTT
ACGGCAAAAACCGACAAAACAGGACTTGTTTGGCGTTTGTTTTCTCGAGT
TAGGGTGCTGTGAAGAAGTTTCTAGTTGTTCTGACCAAAAAAGGATTATG
AAACAAGAACCTCCTACTCATTCTGAGCACCACTACTCGGCACGACGCGA
CAGCAGTTTCCCATGAAGGGGCTTTGGCCCAACCTAGTGTTGACAACCTT
ACCGAGCAGCTTGTTTTGAACCGGCGTTCGTCGGGACCCAAGTGCTACCC
TTCCTGATTTCGACGTCCCACGCAAAGTTGTGAAGGTGGCCCCCTTCCCT
GTCCCCCGAATTTGATGTTCAGATTATTTTCTTCAGAAAGTGTTTGGTTA
TTCCCCGTTGTCTCTCGCCAGGTTTTGCTTCTTGATCGGACTGCGCCTAT
AGGAAACATAGTCGTTGCGAAGCTCTATGGGACGAACACCGTGTAGGCCC
ATGCACGCTTGGAAAGATCCGATCAGTTCGCGTCGGCCCCTGTCCGAAGT
CGATGGCTCATCGTGTGCAACGCGACCAAATTCCCTCTCGACCTTGTGAT
GCTGGAGTTGGCACTGATTCAGATGTGTCGTATGCTCATGACCCATGGAT
TTAAGAAAGTGCTGTCAGTAATCTGGTTGTTTGCGACGAAGTCGGCGGGG
TGCCGTGAAGAAGTTTCTAATTGTTCTGACCAAAAAGGATTATGAAACAA
GAACCTCCTACTCATTCTGAGCGCCCTTTGCCCTTGTGCCAAACTCTCCA
CGTATTGGAAGTTTAGCCGTCATCGGACAGACGGCACCGTTAGTGATGTA
GAGTCACAGAGCGATGCCGAATCTGTTTGTTTATTGTTGTATTTTCAAAA
CACGACCCTCCCCACCTTCTCCGGTGCAATCAACTCTCGCCGTTGCTGGG
AGTCGGTTTTGAAGGTTGGCATTCTCTTCTCTGTACTGCTCTGTCGGAGC
AAAACCTTGATCTCCGTTCTTCGGTGCATGCCCCTGGAGAAGGTTGTTTT
ATTGCTGTTGGCTTCTCCGGGTTGTGTGCGTCTCTGTGTAGTCTACGATA
TATGCCATGCCTCACGCCACCCCGCGCCGGGTCCATTCTCAGGTGGTTGA
GAAGATGGAGAACGGAGGGAGGACTGTGACCCGCGTGGGACAGCAGGACC
TTGACCGCATCGCCGGCGCGGTCGTACGTGGAGACGACTAAACCCACGGT
TGCTCTTTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig839:5318..9828-

>mRNA_E_fasciculatus_S2_contig839.16519.1 ID=mRNA_E_fasciculatus_S2_contig839.16519.1|Name=mRNA_E_fasciculatus_S2_contig839.16519.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=447bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig839:5318..9828- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGACTACGAGCCTCGAGGAATCACCGTGCGCGATGTCGCCGCGGC
TGACTTCATCAAGGCGTACGCCGAGCACCTGAAGAACACCGGCCGTGTCG
AGCTGCCCTCGTGGTGCGACTTGGTCAAGACCGCTCCCCACAAGGAGATG
TGCCCTTACGACCAGGACTGGTACTACATCCGCGCCGCTGCGGTGGCGCG
CAAGGTGTACCTTCGCCCCGGGCGCGGCGTCGGTGGCCTGAGCAAGGCTT
TCGGGACCAAGGCACGCCGGGGGACCATGACCAACACGCACAAGCCGGCG
GCGACGGGCATCATCCGCCACGTGCTCCAGCAGCTCGAGGCACTCAAGGT
GGTTGAGAAGATGGAGAACGGAGGGAGGACTGTGACCCGCGTGGGACAGC
AGGACCTTGACCGCATCGCCGGCGCGGTCGTACGTGGAGACGACTAA
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