mRNA_E_fasciculatus_S2_contig8381.16515.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: EamA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE35_9PHAE) HSP 1 Score: 263 bits (672), Expect = 2.050e-83 Identity = 151/175 (86.29%), Postives = 155/175 (88.57%), Query Frame = 1
Query: 1 RRRRRNTSLGSALGETPVHNDAPRPALRSSRRKCVLLLCAARDSSAEDVWLAPTNVMTGEEGEGVQ-RG-SSSXXXXXXXGHPSTPMPPDGVAAGGIEASSLVPLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGAKE 519
RRRRRNT++ SALGETPV+NDAPR AL S RRK VLLLCAARDSSAEDVWL PTNVMTGEE GVQ RG SSSXXXXXXX TP PPD V A GIEASSL+PLALLN VTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVG KE
Sbjct: 61 RRRRRNTAVASALGETPVYNDAPRRALCSGRRKNVLLLCAARDSSAEDVWLPPTNVMTGEEEVGVQQRGISSSXXXXXXXXXXXTPEPPDRVEATGIEASSLLPLALLNAVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGDKE 235
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: EamA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ86_ECTSI) HSP 1 Score: 160 bits (405), Expect = 5.110e-45 Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1
Query: 262 DGVAAGGIEASSLVPLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGAKE 519
D V GIEASSL+PLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVG KE
Sbjct: 3 DRVEGAGIEASSLLPLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGDKE 88
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1B8_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.450e-9 Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 274 AGGIEASSLVPLALLNTVTLLWGTQHAVIKLIL-QEDLSPGVTNFARFGIAALIFSPWTPGVLRD-------TPSI 477
AGG + + A+L+ VT+LWGTQHA+IKL + D+SP NFARF I AL +P PG+ R TPS+
Sbjct: 72 AGGFMGTEIPGWAILSLVTVLWGTQHAIIKLAVGTADVSPASLNFARFSIGALAAAPSLPGLYRQKENDVQGTPSV 147
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUF2_VITBC) HSP 1 Score: 64.7 bits (156), Expect = 4.770e-9 Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 283 IEASSLVPLALLNTVTLLWGTQHAVIKLILQEDL--SPGVTNFARFGIAALIFSPWTP 450
+ A L+ L LLNTVT+LWGTQHAVIK + + SP + N RF +AALIF PW P
Sbjct: 105 LPAFPLLELMLLNTVTVLWGTQHAVIKSAVDPSVASSPALINLMRFAVAALIFLPWLP 162
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Dmt (superfamily drug metabolite transporter n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z6B4_NANGC) HSP 1 Score: 63.5 bits (153), Expect = 9.200e-9 Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLL-TGQVGVGAKE 519
LLN VTLLWG+QHAVIK L PGV N RFG+A+L F PWTP L PS+ G+ GV A E
Sbjct: 175 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSFL--PPSLGTCSENGEEGVDAAE 243
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DED0_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 9.210e-9 Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVL 459
LLN VTLLWG+QHAVIK L PGV N RFG+A+L F PWTP VL
Sbjct: 190 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSVL 239
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Permease (of the drug metabolite transporter superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U530_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.260e-8 Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLL-TGQVGVGAKE 519
LLN VTLLWG+QHAVIK L PGV N RFG+A+L F PWTP L PS+ G+ GV A E
Sbjct: 209 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSFL--PPSLGTCSENGEEGVDAAE 277
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Dmt (superfamily drug metabolite transporter n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z819_NANGC) HSP 1 Score: 63.5 bits (153), Expect = 1.420e-8 Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLL-TGQVGVGAKE 519
LLN VTLLWG+QHAVIK L PGV N RFG+A+L F PWTP L PS+ G+ GV A E
Sbjct: 175 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSFL--PPSLGTCSENGEEGVDAAE 243
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT8_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 2.670e-8 Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 313 LLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGA 513
LLN VT++WGTQHAVIK+ L+E SP N RF +AA + + WTP + L + V GA
Sbjct: 23 LLNAVTIIWGTQHAVIKVALEEGCSPATVNAVRFAVAAALLTIWTPSASKAASVHTSLPSKGVRTGA 89
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JXF7_GUITC) HSP 1 Score: 60.5 bits (145), Expect = 9.160e-8 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 304 PLALLNTVTLLWGTQHAVIKLILQEDL-SPGVTNFARFGIAALIFSPWTPGV 456
P LLN +T+LWG+QHA+IKL L+ D SP + N RF +A ++F P+ PG+
Sbjct: 6 PWMLLNFITILWGSQHAIIKLTLEGDTGSPALLNMMRFALATMVFLPFAPGI 57 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8381.16515.1 >prot_E_fasciculatus_S2_contig8381.16515.1 ID=prot_E_fasciculatus_S2_contig8381.16515.1|Name=mRNA_E_fasciculatus_S2_contig8381.16515.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=173bp RRRRRNTSLGSALGETPVHNDAPRPALRSSRRKCVLLLCAARDSSAEDVWback to top mRNA from alignment at E_fasciculatus_S2_contig8381:5173..5691+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8381.16515.1 ID=mRNA_E_fasciculatus_S2_contig8381.16515.1|Name=mRNA_E_fasciculatus_S2_contig8381.16515.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8381:5173..5691+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8381:5173..5691+ >mRNA_E_fasciculatus_S2_contig8381.16515.1 ID=mRNA_E_fasciculatus_S2_contig8381.16515.1|Name=mRNA_E_fasciculatus_S2_contig8381.16515.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8381:5173..5691+ (Ectocarpus fasciculatus EfasUO2)back to top |