mRNA_E_fasciculatus_S2_contig8381.16515.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8381.16515.1
Unique NamemRNA_E_fasciculatus_S2_contig8381.16515.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: EamA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE35_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.050e-83
Identity = 151/175 (86.29%), Postives = 155/175 (88.57%), Query Frame = 1
Query:    1 RRRRRNTSLGSALGETPVHNDAPRPALRSSRRKCVLLLCAARDSSAEDVWLAPTNVMTGEEGEGVQ-RG-SSSXXXXXXXGHPSTPMPPDGVAAGGIEASSLVPLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGAKE 519
            RRRRRNT++ SALGETPV+NDAPR AL S RRK VLLLCAARDSSAEDVWL PTNVMTGEE  GVQ RG SSSXXXXXXX    TP PPD V A GIEASSL+PLALLN VTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVG KE
Sbjct:   61 RRRRRNTAVASALGETPVYNDAPRRALCSGRRKNVLLLCAARDSSAEDVWLPPTNVMTGEEEVGVQQRGISSSXXXXXXXXXXXTPEPPDRVEATGIEASSLLPLALLNAVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGDKE 235          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: EamA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ86_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 5.110e-45
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1
Query:  262 DGVAAGGIEASSLVPLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGAKE 519
            D V   GIEASSL+PLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVG KE
Sbjct:    3 DRVEGAGIEASSLLPLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGDKE 88          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1B8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.450e-9
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  274 AGGIEASSLVPLALLNTVTLLWGTQHAVIKLIL-QEDLSPGVTNFARFGIAALIFSPWTPGVLRD-------TPSI 477
            AGG   + +   A+L+ VT+LWGTQHA+IKL +   D+SP   NFARF I AL  +P  PG+ R        TPS+
Sbjct:   72 AGGFMGTEIPGWAILSLVTVLWGTQHAIIKLAVGTADVSPASLNFARFSIGALAAAPSLPGLYRQKENDVQGTPSV 147          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUF2_VITBC)

HSP 1 Score: 64.7 bits (156), Expect = 4.770e-9
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  283 IEASSLVPLALLNTVTLLWGTQHAVIKLILQEDL--SPGVTNFARFGIAALIFSPWTP 450
            + A  L+ L LLNTVT+LWGTQHAVIK  +   +  SP + N  RF +AALIF PW P
Sbjct:  105 LPAFPLLELMLLNTVTVLWGTQHAVIKSAVDPSVASSPALINLMRFAVAALIFLPWLP 162          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Dmt (superfamily drug metabolite transporter n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z6B4_NANGC)

HSP 1 Score: 63.5 bits (153), Expect = 9.200e-9
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLL-TGQVGVGAKE 519
            LLN VTLLWG+QHAVIK  L      PGV N  RFG+A+L F PWTP  L   PS+      G+ GV A E
Sbjct:  175 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSFL--PPSLGTCSENGEEGVDAAE 243          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DED0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.210e-9
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVL 459
            LLN VTLLWG+QHAVIK  L      PGV N  RFG+A+L F PWTP VL
Sbjct:  190 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSVL 239          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Permease (of the drug metabolite transporter superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U530_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.260e-8
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLL-TGQVGVGAKE 519
            LLN VTLLWG+QHAVIK  L      PGV N  RFG+A+L F PWTP  L   PS+      G+ GV A E
Sbjct:  209 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSFL--PPSLGTCSENGEEGVDAAE 277          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Dmt (superfamily drug metabolite transporter n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z819_NANGC)

HSP 1 Score: 63.5 bits (153), Expect = 1.420e-8
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  313 LLNTVTLLWGTQHAVIKLILQEDLS-PGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLL-TGQVGVGAKE 519
            LLN VTLLWG+QHAVIK  L      PGV N  RFG+A+L F PWTP  L   PS+      G+ GV A E
Sbjct:  175 LLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSFL--PPSLGTCSENGEEGVDAAE 243          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.670e-8
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
Query:  313 LLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTPGVLRDTPSIPDLLTGQVGVGA 513
            LLN VT++WGTQHAVIK+ L+E  SP   N  RF +AA + + WTP   +       L +  V  GA
Sbjct:   23 LLNAVTIIWGTQHAVIKVALEEGCSPATVNAVRFAVAAALLTIWTPSASKAASVHTSLPSKGVRTGA 89          
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JXF7_GUITC)

HSP 1 Score: 60.5 bits (145), Expect = 9.160e-8
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  304 PLALLNTVTLLWGTQHAVIKLILQEDL-SPGVTNFARFGIAALIFSPWTPGV 456
            P  LLN +T+LWG+QHA+IKL L+ D  SP + N  RF +A ++F P+ PG+
Sbjct:    6 PWMLLNFITILWGSQHAIIKLTLEGDTGSPALLNMMRFALATMVFLPFAPGI 57          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8381.16515.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
EamA2.050e-8386.29domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
EamA5.110e-4593.02domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical1.450e-946.05protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Uncharacterized4.770e-955.17protein n=2 Tax=Vitrella brassicaformis TaxID=1169... [more]
Dmt9.200e-953.52superfamily drug metabolite transporter n=1 Tax=Na... [more]
Uncharacterized9.210e-964.00protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Permease1.260e-853.52of the drug metabolite transporter superfamily n=1... [more]
Dmt1.420e-853.52superfamily drug metabolite transporter n=1 Tax=Na... [more]
Uncharacterized2.670e-844.78protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized9.160e-850.00protein (Fragment) n=1 Tax=Guillardia theta (strai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8381contigE_fasciculatus_S2_contig8381:5173..5691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score160.6
Seed ortholog evalue6.5e-37
Seed eggNOG ortholog2880.D7FQ86
Model size521
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.EamA-like transporter family
EggNOG OGs2QPTR@2759,COG0697@1
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-01_007060.1
Cds size519
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842497.2177663-CDS-E_fasciculatus_S2_contig8381:5172..56911696842497.2177663-CDS-E_fasciculatus_S2_contig8381:5172..5691Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8381 5173..5691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8381.16515.1prot_E_fasciculatus_S2_contig8381.16515.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8381 5173..5691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8381.16515.1

>prot_E_fasciculatus_S2_contig8381.16515.1 ID=prot_E_fasciculatus_S2_contig8381.16515.1|Name=mRNA_E_fasciculatus_S2_contig8381.16515.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=173bp
RRRRRNTSLGSALGETPVHNDAPRPALRSSRRKCVLLLCAARDSSAEDVW
LAPTNVMTGEEGEGVQRGSSSSSSSSSSGHPSTPMPPDGVAAGGIEASSL
VPLALLNTVTLLWGTQHAVIKLILQEDLSPGVTNFARFGIAALIFSPWTP
GVLRDTPSIPDLLTGQVGVGAKE
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mRNA from alignment at E_fasciculatus_S2_contig8381:5173..5691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8381.16515.1 ID=mRNA_E_fasciculatus_S2_contig8381.16515.1|Name=mRNA_E_fasciculatus_S2_contig8381.16515.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8381:5173..5691+ (Ectocarpus fasciculatus EfasUO2)
CGACGACGACGCAGGAACACGTCGCTCGGCTCCGCTCTCGGGGAAACGCC CGTCCACAACGATGCGCCACGGCCAGCTCTGCGCAGTAGCCGTAGAAAAT GCGTGCTACTGCTGTGTGCTGCGCGGGATTCTTCTGCCGAGGATGTTTGG TTGGCCCCAACGAACGTCATGACTGGTGAGGAGGGAGAAGGGGTTCAACG AGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTCACCCGTCGACTC CAATGCCACCAGACGGAGTAGCAGCAGGTGGAATCGAAGCATCGTCATTG GTTCCTCTTGCACTGCTCAACACGGTGACGCTGCTCTGGGGCACGCAGCA CGCCGTGATCAAGCTCATTCTGCAGGAGGACCTGAGCCCAGGGGTGACAA ACTTTGCCCGGTTCGGCATCGCGGCGCTGATATTCTCGCCATGGACGCCA GGGGTGCTCCGAGATACACCGTCCATCCCTGATCTTTTAACTGGTCAGGT TGGTGTAGGGGCCAAAGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8381:5173..5691+

>mRNA_E_fasciculatus_S2_contig8381.16515.1 ID=mRNA_E_fasciculatus_S2_contig8381.16515.1|Name=mRNA_E_fasciculatus_S2_contig8381.16515.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8381:5173..5691+ (Ectocarpus fasciculatus EfasUO2)
CGACGACGACGCAGGAACACGTCGCTCGGCTCCGCTCTCGGGGAAACGCC
CGTCCACAACGATGCGCCACGGCCAGCTCTGCGCAGTAGCCGTAGAAAAT
GCGTGCTACTGCTGTGTGCTGCGCGGGATTCTTCTGCCGAGGATGTTTGG
TTGGCCCCAACGAACGTCATGACTGGTGAGGAGGGAGAAGGGGTTCAACG
AGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTCACCCGTCGACTC
CAATGCCACCAGACGGAGTAGCAGCAGGTGGAATCGAAGCATCGTCATTG
GTTCCTCTTGCACTGCTCAACACGGTGACGCTGCTCTGGGGCACGCAGCA
CGCCGTGATCAAGCTCATTCTGCAGGAGGACCTGAGCCCAGGGGTGACAA
ACTTTGCCCGGTTCGGCATCGCGGCGCTGATATTCTCGCCATGGACGCCA
GGGGTGCTCCGAGATACACCGTCCATCCCTGATCTTTTAACTGGTCAGGT
TGGTGTAGGGGCCAAAGAG
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