mRNA_E_fasciculatus_S2_contig838.16511.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig838.16511.1
Unique Name	mRNA_E_fasciculatus_S2_contig838.16511.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Smr (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G092_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.530e-59
Identity = 96/101 (95.05%), Postives = 100/101 (99.01%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAIDVKFAELSEHATGGWG 303
            QVFQRKT+DLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLF KVPDQSTGHVGAIDV+FA+LSEH+TGGWG
Sbjct:   27 QVFQRKTLDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAKLSEHSTGGWG 127

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 6.320e-54
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAIDVKFAELSEHATGGWG 303
            QVFQRKTMDLHGLHVAEAVEVLDREMGALA RGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLF KVPDQSTGHVGAIDV+FAELSEH+TGGWG
Sbjct:  554 QVFQRKTMDLHGLHVAEAVEVLDREMGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGGWG 654

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV24_GLOUD)

HSP 1 Score: 96.3 bits (238), Expect = 1.570e-17
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAI 255
            Q++  + MDLHGLHVAEAVE L R +  LA+ GL ++ ++TG+GHHSKGP   ARLLPA+E F    GY FS VPD   G+VG +
Sbjct:  526 QLYSEQLMDLHGLHVAEAVEFLTRMLPKLADEGLETIYLVTGSGHHSKGPQGNARLLPAIEQFLAAEGYQFSSVPD-GRGYVGML 609

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Uncharacterized (protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.570e-17
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAIDV 261
            QV++ + MDLHGLHV EAVE L   +  LAE GL +VR++TGTGHHS+GP N ARLLPAVE+F    GY    V D+  G+VG + V
Sbjct:  453 QVYRDRLMDLHGLHVVEAVEFLRSWLPQLAEDGLDTVRIVTGTGHHSRGPQNTARLLPAVEHFLRTEGYESESVADRK-GYVGMLQV 538

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW3_PYTOL)

HSP 1 Score: 92.8 bits (229), Expect = 1.690e-16
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAIDV 261
            Q++    MDLHGLHVAEAVE L + +  LA+ GL S+ ++TG+GHHSKGPT  ARLLPAVE F    GY FS V D+  G+VG + V
Sbjct:  438 QLYTDHLMDLHGLHVAEAVEFLAQMLPQLADDGLESIYLVTGSGHHSKGPTGNARLLPAVEQFLTAEGYRFSPVADRR-GYVGMLMV 523

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR71_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.250e-16
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAIDV 261
            QV++ + MDLHGLHV EAV  L   +  LAE GL  +R++TG GHHSKGP N ARLLPAVE F    GY +  V D+  GHVG + V
Sbjct:  915 QVYRDRLMDLHGLHVVEAVAFLQSWLPQLAEDGLELIRIVTGAGHHSKGPQNTARLLPAVEQFLRSEGYEYKSVVDRK-GHVGMLQV 1000

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Membrane (metallo-endopeptidase 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKZ9_PHYNI)

HSP 1 Score: 88.6 bits (218), Expect = 1.230e-15
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAI 255
            Q++  + MDLHGLHVAEAVE L + +  LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY ++ V D++ G VG +
Sbjct:  253 QLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGML 336

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: NEDD4-binding (protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C524_PHYNI)

HSP 1 Score: 88.6 bits (218), Expect = 4.540e-15
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAI 255
            Q++  + MDLHGLHVAEAVE L + +  LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY ++ V D++ G VG +
Sbjct:  483 QLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGML 566

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXY4_BRELC)

HSP 1 Score: 88.2 bits (217), Expect = 6.240e-15
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAIDVK 264
            Q++  + MDLHGLHVAEAVE+L + +   A+ G+ S+ ++TG+GHHSKGPT  +RLLPAVE+F    GY ++ V D   G VG + V+
Sbjct:  498 QLYMDRMMDLHGLHVAEAVELLAKMLPKFADEGVDSIYLVTGSGHHSKGPTGNSRLLPAVEHFLAGEGYHYTPVAD-GAGFVGMLLVE 584

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BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB56_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.350e-15
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1

Query:    1 QVFQRKTMDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFSKVPDQSTGHVGAI 255
            Q++  + MDLHGLHVAEAVE L + +  LA+ G+  + V+TG+GHHSKGP   ARLLPAVE F    GY F+ V D   G VG +
Sbjct:  507 QLYMDRMMDLHGLHVAEAVEFLIQMLPKLADEGVDEIYVVTGSGHHSKGPHGNARLLPAVERFLAAEGYQFTPVAD-GAGFVGML 590

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig838.16511.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Smr	1.530e-59	95.05	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Uncharacterized	6.320e-54	96.04	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.570e-17	55.29	protein n=1 Tax=Globisporangium ultimum (strain AT...	[more]
Uncharacterized	5.570e-17	56.32	protein AlNc14C400G11359 n=1 Tax=Albugo laibachii ...	[more]
Uncharacterized	1.690e-16	56.32	protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep...	[more]
Uncharacterized	2.250e-16	55.17	protein n=1 Tax=Albugo candida TaxID=65357 RepID=A...	[more]
Membrane	1.230e-15	51.76	metallo-endopeptidase 1 n=1 Tax=Phytophthora nicot...	[more]
NEDD4-binding	4.540e-15	51.76	protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0...	[more]
Uncharacterized	6.240e-15	50.00	protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A...	[more]
Uncharacterized	6.350e-15	52.94	protein n=2 Tax=Peronospora effusa TaxID=542832 Re...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig838	contig	E_fasciculatus_S2_contig838:11686..13921 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	92.8
Seed ortholog evalue	9.1e-17
Seed eggNOG ortholog	65071.PYU1_T008821
Model size	1405
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	CCCH zinc finger and SMR domain
EggNOG OGs	1MG3D@121069,KOG2401@1,KOG2401@2759
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-24_000370.1
Cds size	285
COG Functional cat.	L
Best tax level	Pythiales
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842496.7654917-UTR-E_fasciculatus_S2_contig838:11685..12784	1696842496.7654917-UTR-E_fasciculatus_S2_contig838:11685..12784	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig838 11686..12784 -
1696842496.807009-UTR-E_fasciculatus_S2_contig838:13900..13921	1696842496.807009-UTR-E_fasciculatus_S2_contig838:13900..13921	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig838 13901..13921 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842496.776246-CDS-E_fasciculatus_S2_contig838:12784..12931	1696842496.776246-CDS-E_fasciculatus_S2_contig838:12784..12931	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig838 12785..12931 -
1696842496.7892883-CDS-E_fasciculatus_S2_contig838:13762..13900	1696842496.7892883-CDS-E_fasciculatus_S2_contig838:13762..13900	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig838 13763..13900 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig838.16511.1	prot_E_fasciculatus_S2_contig838.16511.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig838 12785..13900 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig838:11686..13921-
coding sequence from alignment at E_fasciculatus_S2_contig838:11686..13921-

protein sequence of mRNA_E_fasciculatus_S2_contig838.16511.1

>prot_E_fasciculatus_S2_contig838.16511.1 ID=prot_E_fasciculatus_S2_contig838.16511.1|Name=mRNA_E_fasciculatus_S2_contig838.16511.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp
MDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLL
PAVENFCLIRGYLFSKVPDQSTGHVGAIDVKFAELSEHATGGWG*

mRNA from alignment at E_fasciculatus_S2_contig838:11686..13921-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig838.16511.1 ID=mRNA_E_fasciculatus_S2_contig838.16511.1|Name=mRNA_E_fasciculatus_S2_contig838.16511.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2236bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig838:11686..13921- (Ectocarpus fasciculatus EfasUO2)
CAGGTGTTCCAGCGAAAGACGATGGATCTTCACGGCTTACACGTGGCTGA
GGCCGTCGAGGTGCTGGACAGGGAGATGGGAGCGCTGGCGGAGAGGGGGC
TGTGCAGCGTCCGAGTCTTGACAGGCACGGGGCACCACAGCAAGGGACCA
ACCAACAAGGTAAACAACACCAAGGCGTGTGTCTCTGATGAGAGAGATCT
CTCGGAAGTCGAATGCTGCGCTTCTTGCAGCAGCACGTGGTTTTCTGTCG
GTGGCTGGTCGCGAGTGGCTGGTTGTTTTCTTTTTAATCGAGGACAAAGC
TGCACATACGTGTCGGGCCGCGAAAGAACACCGCTATTTAGTTCTTTACG
GCCCGTCGTGGACTCCAGCGTTTAGCTCTCTTGCGTGTTGCGAAGCTGAT
TTGAACTAGCGGTGATCTCATCACTTGAGAATATACAGGTACGCATGATA
TACCGTCGTATAGCAATGAGGGGCAGGTGTGAACCGAGCCCATCGAATTA
GACCAAGTGCTACTGGATGTACCATTAAGGTGTTGTTGTGTGCATCCGCT
GGCATCGGTTAAATAATGCGGCAGGAGAACCGCGTTCATGTCCAGTCTGC
TTCAGCTAGTACACCCTTGCCTGCCATAATCGCCACGCCATTGACACTAC
AGACCGCACCCGTACGTAAGAAAACCAACTAAACCTCTCAAGGCTCACTT
CTGATATCCTGTGGGGTATCCGCACATCGACTGCATTGGTTGTACATTAG
TCCAGGATTCTTGACTGAGGACCCGTTGTTGCGTCAAGTCTGTACTCTTT
GAAGTATTTTGGGCTTACTCTCTGCATTGCTTTTTCCTCAAGTGATGGCG
CGTGACGCTGTTCTCCGGTGTGGTATGCATACGTCCATCCGGAACACAAC
ACGAATGCTTCCACGTCGAACGAGCTTCCACTGATGAGCGCGAGCATGCT
CACGCCCCCCGCCATCGAAACACGTGAAACACGTGGACAGGCACGCCTTT
TGCCAGCGGTGGAAAACTTTTGCTTGATTCGCGGTTATCTCTTCAGCAAG
GTACCGGATCAAAGCACCGGCCACGTCGGGGCGATCGACGTCAAATTCGC
GGAACTGTCGGAACACGCGACGGGAGGATGGGGTTAGGTTGTGCCGACTT
CGACCATTAGTGGTGGGGGATCATTGTTCCGCGACGAGAAACGTCGCATG
CCTGACGAAAACAAGACAGGGACGAAAGCAGTGCTTTAGTAGTGCCAATG
CTCGCACACACCCTAGGCTGACATTCGGAAGTTCATTGCTCGACGGATGA
GGAAAACGATCGATACGAGCAAGGAAGACTGACTCTCTGGACGAGGACTC
TCCAACGCCGCAACGGCACCGTCTTGGTTATCGAGTGGAGACAAATCTGC
CGATAAAATTCGGTGTGCGAGGTCTCCCACTTCTCCGGAACATGGAGTGA
AATTTTTCAACTTACGTCGACCCCAAGCCCGAGTTAATGTGTGATCTGAG
AGCCCTGGGGAGTTGTTTTAAGACACGACAGGGGGTGCTTGTTGTTCTAC
AAGTTATTTCAGTCTTACGACATGGATAGAGATAGCAGTGATAGTAAAAT
ACTAGTTGAGTTTCGAACTACGTTTTAGTCCGAGTTCATCTCACTCAAGG
CATGCTTGGGTTGGAAACCATGGTCTTAGGTGTGTTACAATGATCGTGGG
GTTCGTTGGAGGTCGATTTTGTGTTAGCTTTGCCCTGCTCAAGGGGAGCG
ACGCATGCATCCTGATTTGTGTATTTCGCACACCACCCAACAAGCAAGGG
TTTGATGGCTGTAACAGGTTTACCGTAGTTGTTTGAGATTTGATCGCGAC
CCAAGCGACACGACGATGTGAGTATTTCAGCGGTTATATCAGCCTTTAAC
GTGCCCCGTCCGCATTGAAGAATGTTCGTCGTTTTGCGATGGTGTTGACG
TCGGAAATCAAAGTGTTGAATTGCCGCGGCATCAAATGTCTGCATGAAAG
AACTCACGAATCCGTATTGAGCAGATAATAGCAGAACGAAGAACAGATGG
TAGACCGTATGAACATGACCAGTAGATTTTTTTATGTTAAGATTCCACAC
GGTGCCATCAACGTAACTGGGTGGATTGATCCAACCATTCGGTGAAAATT
ACAGGAAAAGAAGGGCTAGCGGTTGAGAGGGTGCCAGGTAAAGAAAACTG
CAGCGCAGCATGCCGAAAAAATAGCGATGTTTTCCC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig838:11686..13921-

>mRNA_E_fasciculatus_S2_contig838.16511.1 ID=mRNA_E_fasciculatus_S2_contig838.16511.1|Name=mRNA_E_fasciculatus_S2_contig838.16511.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig838:11686..13921- (Ectocarpus fasciculatus EfasUO2)
ATGGATCTTCACGGCTTACACGTGGCTGAGGCCGTCGAGGTGCTGGACAG
GGAGATGGGAGCGCTGGCGGAGAGGGGGCTGTGCAGCGTCCGAGTCTTGA
CAGGCACGGGGCACCACAGCAAGGGACCAACCAACAAGGCACGCCTTTTG
CCAGCGGTGGAAAACTTTTGCTTGATTCGCGGTTATCTCTTCAGCAAGGT
ACCGGATCAAAGCACCGGCCACGTCGGGGCGATCGACGTCAAATTCGCGG
AACTGTCGGAACACGCGACGGGAGGATGGGGTTAG