mRNA_E_fasciculatus_S2_contig8378.16509.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8378.16509.1
Unique NamemRNA_E_fasciculatus_S2_contig8378.16509.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8378.16509.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ54_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 6.800e-117
Identity = 416/472 (88.14%), Postives = 425/472 (90.04%), Query Frame = 1 
Query:   70 AGLRAAATSGWLPFTDLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRTAHENADSAEEGDGTG----FASRVPRPTIEAISWIRASPCSALRDKLPSEVKRLTFGSNFNHTVVGIRWPEGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVDN----QEGGVRWPPKLERITLGSYRRSLTGVSWPPGLLALKITGEFDLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSYFSIDSKVFNHPVRGVSWPDSMTELHFGDGXXXXXXXXXXXXXLVRLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLNIISRKRISTLGWQRKE 1461
            +GLRAAA SGWLPF DLIT QLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPR AHE+ DSA+EGDG+G    FASRVPRPTIEAISWIRASPCSALRDKLPSE KRLTFGSNFNHT+VGIRWPEGL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  V +    +EGGVRWP  LERI LGSYRRSLTGVSWPPG             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LS FSIDSKVFN+PV GVSWPD MT+LHFGDG XXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRL IISRKRISTLGWQRKE
Sbjct:   15 SGLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGDGSGGAPGFASRVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTLVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSTDKVKEGGVRWPSTLERIALGSYRRSLTGVSWPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSQFSIDSKVFNYPVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQRKE 486
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BLAST of mRNA_E_fasciculatus_S2_contig8378.16509.1 vs.
Match: Proline (dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU94_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 3.970e-94
Identity = 225/259 (86.87%), Postives = 233/259 (89.96%), Query Frame = 1 
Query:    1 LEAESRPSAATTDDADTRRRRRDAGLRAAATSGWLPFTDLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRTAHENADSAEEGDGTG----FASRVPRPTIEAISWIRASPCSALRDKLPSEVKRLTFGSNFNHTVVGIRWPEGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVDN-----QEGGVRWPPKLERITLGSYRRSLTGVSWPPGLLALKIT 750
            + AESRPSAATTDDAD RR RRDAGLRAAA SGWLPF DLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPR AHE+ DSA+EG+G+G    FASRVPRPTIEAISWIRASPC ALRDKLPSE KRL FGSNFNHTVVGIRWPEGL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LPV +     +EGGVRWP  LERITLGSYRRSLTGVSWPPGLLAL +T
Sbjct:    1 MSAESRPSAATTDDADRRRCRRDAGLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGEGSGGAPGFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLAFGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTDKVKEGGVRWPSTLERITLGSYRRSLTGVSWPPGLLALVLT 259
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8378.16509.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.800e-11788.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Proline3.970e-9486.87dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8378contigE_fasciculatus_S2_contig8378:305..1765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score319.7
Seed ortholog evalue2.4e-84
Seed eggNOG ortholog2880.D7FU94
Model size1461
KEGG rclassRC00083
KEGG koko:K00318
KEGG ReactionR10507
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.proline dehydrogenase activity
EggNOG OGsCOG0506@1,KOG0186@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001350.1
Cds size1461
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842496.57397-CDS-E_fasciculatus_S2_contig8378:304..17651696842496.57397-CDS-E_fasciculatus_S2_contig8378:304..1765Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8378 305..1765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8378.16509.1prot_E_fasciculatus_S2_contig8378.16509.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8378 305..1765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8378.16509.1

>prot_E_fasciculatus_S2_contig8378.16509.1 ID=prot_E_fasciculatus_S2_contig8378.16509.1|Name=mRNA_E_fasciculatus_S2_contig8378.16509.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=487bp
LEAESRPSAATTDDADTRRRRRDAGLRAAATSGWLPFTDLITFQLASLAM
CVICRHAQKPVLVNVAKRTPKTLWSIDRPRTAHENADSAEEGDGTGFASR
VPRPTIEAISWIRASPCSALRDKLPSEVKRLTFGSNFNHTVVGIRWPEGL
EEIRFGSKFSQPVAEVAWPASLQRLSLGQAFDQSLADAAFPEGLKEVSFG
AKFNQSLLPVDNQEGGVRWPPKLERITLGSYRRSLTGVSWPPGLLALKIT
GEFDLPLAGITLPDSLEELEISSTFNQPIDEVEFPRGLKTLTFGNQFNQA
IEKVNFPSGLERLRLGLSFDQPVERVAFPARLSYFSIDSKVFNHPVRGVS
WPDSMTELHFGDGFNQEISSVALPPRLVRLALGDRFNKPVLDVAWPPGLR
DLSFGHNFNQPVVDVVWPSSLRRLRFGARFKQCLSGADWPTGLETLDLGH
CHMTWGCGPKEGYENWSPRLNIISRKRISTLGWQRKE
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mRNA from alignment at E_fasciculatus_S2_contig8378:305..1765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8378.16509.1 ID=mRNA_E_fasciculatus_S2_contig8378.16509.1|Name=mRNA_E_fasciculatus_S2_contig8378.16509.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1461bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8378:305..1765+ (Ectocarpus fasciculatus EfasUO2)
TTAGAAGCCGAGTCGAGGCCGTCCGCGGCCACAACTGACGATGCTGACAC
ACGCCGGCGCCGCCGAGACGCAGGGCTCCGCGCGGCGGCGACGTCGGGAT
GGCTCCCCTTCACCGACCTTATCACCTTCCAGCTCGCGTCGTTAGCCATG
TGCGTCATCTGCCGCCATGCGCAGAAGCCGGTGCTGGTGAACGTTGCCAA
GCGGACACCCAAGACGCTCTGGTCAATCGATCGCCCAAGGACAGCTCACG
AAAACGCCGACAGCGCCGAAGAGGGCGACGGTACTGGCTTTGCTAGCCGT
GTGCCTCGCCCGACCATCGAAGCTATCTCCTGGATCCGCGCATCGCCGTG
CTCCGCTCTCCGCGACAAGCTGCCCTCAGAGGTGAAGCGGCTGACATTCG
GGAGCAACTTCAACCACACCGTGGTCGGTATCCGCTGGCCCGAAGGGCTG
GAGGAGATCAGATTCGGGTCCAAGTTCTCTCAGCCCGTCGCTGAAGTCGC
GTGGCCGGCCTCCCTGCAACGGCTCTCGTTGGGGCAGGCTTTCGACCAGT
CGCTGGCGGACGCGGCGTTTCCCGAAGGCCTGAAAGAGGTCTCCTTCGGC
GCAAAGTTCAACCAGAGCTTGCTACCGGTAGACAACCAGGAGGGAGGGGT
ACGGTGGCCTCCGAAACTGGAACGCATCACGTTGGGGAGCTATCGTAGGA
GCTTGACCGGGGTCTCGTGGCCGCCCGGACTCCTCGCTCTCAAGATCACG
GGTGAGTTTGACCTCCCGCTCGCCGGGATAACGCTTCCAGACAGTCTGGA
AGAGTTGGAGATCTCCTCGACATTTAACCAACCAATCGACGAGGTGGAGT
TTCCCCGGGGCTTAAAGACGCTGACATTCGGGAACCAGTTCAACCAGGCG
ATAGAAAAGGTCAACTTCCCGTCGGGGCTGGAAAGGCTGAGGCTCGGGCT
GTCGTTTGATCAGCCCGTGGAGCGGGTAGCCTTCCCGGCGAGACTGTCGT
ACTTCTCGATCGACAGCAAAGTTTTCAACCACCCTGTGAGAGGGGTGTCA
TGGCCAGATTCCATGACGGAGCTTCACTTCGGGGACGGCTTCAACCAAGA
AATCAGCTCCGTGGCGTTGCCCCCACGACTGGTTCGGCTAGCGTTAGGGG
ACCGCTTCAACAAGCCCGTCCTGGACGTGGCTTGGCCTCCCGGGTTGCGG
GACCTATCGTTCGGCCACAACTTCAACCAGCCCGTCGTGGACGTCGTGTG
GCCGTCGTCCCTCAGACGATTGCGCTTCGGAGCGCGGTTCAAGCAGTGTC
TCTCCGGGGCAGACTGGCCCACCGGACTGGAGACGCTCGACCTCGGCCAC
TGCCACATGACGTGGGGTTGCGGGCCCAAAGAGGGATACGAGAATTGGTC
GCCACGGCTGAATATTATCTCGCGGAAGCGCATCAGCACCCTGGGATGGC
AGCGCAAGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8378:305..1765+

>mRNA_E_fasciculatus_S2_contig8378.16509.1 ID=mRNA_E_fasciculatus_S2_contig8378.16509.1|Name=mRNA_E_fasciculatus_S2_contig8378.16509.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1461bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8378:305..1765+ (Ectocarpus fasciculatus EfasUO2)
TTAGAAGCCGAGTCGAGGCCGTCCGCGGCCACAACTGACGATGCTGACAC
ACGCCGGCGCCGCCGAGACGCAGGGCTCCGCGCGGCGGCGACGTCGGGAT
GGCTCCCCTTCACCGACCTTATCACCTTCCAGCTCGCGTCGTTAGCCATG
TGCGTCATCTGCCGCCATGCGCAGAAGCCGGTGCTGGTGAACGTTGCCAA
GCGGACACCCAAGACGCTCTGGTCAATCGATCGCCCAAGGACAGCTCACG
AAAACGCCGACAGCGCCGAAGAGGGCGACGGTACTGGCTTTGCTAGCCGT
GTGCCTCGCCCGACCATCGAAGCTATCTCCTGGATCCGCGCATCGCCGTG
CTCCGCTCTCCGCGACAAGCTGCCCTCAGAGGTGAAGCGGCTGACATTCG
GGAGCAACTTCAACCACACCGTGGTCGGTATCCGCTGGCCCGAAGGGCTG
GAGGAGATCAGATTCGGGTCCAAGTTCTCTCAGCCCGTCGCTGAAGTCGC
GTGGCCGGCCTCCCTGCAACGGCTCTCGTTGGGGCAGGCTTTCGACCAGT
CGCTGGCGGACGCGGCGTTTCCCGAAGGCCTGAAAGAGGTCTCCTTCGGC
GCAAAGTTCAACCAGAGCTTGCTACCGGTAGACAACCAGGAGGGAGGGGT
ACGGTGGCCTCCGAAACTGGAACGCATCACGTTGGGGAGCTATCGTAGGA
GCTTGACCGGGGTCTCGTGGCCGCCCGGACTCCTCGCTCTCAAGATCACG
GGTGAGTTTGACCTCCCGCTCGCCGGGATAACGCTTCCAGACAGTCTGGA
AGAGTTGGAGATCTCCTCGACATTTAACCAACCAATCGACGAGGTGGAGT
TTCCCCGGGGCTTAAAGACGCTGACATTCGGGAACCAGTTCAACCAGGCG
ATAGAAAAGGTCAACTTCCCGTCGGGGCTGGAAAGGCTGAGGCTCGGGCT
GTCGTTTGATCAGCCCGTGGAGCGGGTAGCCTTCCCGGCGAGACTGTCGT
ACTTCTCGATCGACAGCAAAGTTTTCAACCACCCTGTGAGAGGGGTGTCA
TGGCCAGATTCCATGACGGAGCTTCACTTCGGGGACGGCTTCAACCAAGA
AATCAGCTCCGTGGCGTTGCCCCCACGACTGGTTCGGCTAGCGTTAGGGG
ACCGCTTCAACAAGCCCGTCCTGGACGTGGCTTGGCCTCCCGGGTTGCGG
GACCTATCGTTCGGCCACAACTTCAACCAGCCCGTCGTGGACGTCGTGTG
GCCGTCGTCCCTCAGACGATTGCGCTTCGGAGCGCGGTTCAAGCAGTGTC
TCTCCGGGGCAGACTGGCCCACCGGACTGGAGACGCTCGACCTCGGCCAC
TGCCACATGACGTGGGGTTGCGGGCCCAAAGAGGGATACGAGAATTGGTC
GCCACGGCTGAATATTATCTCGCGGAAGCGCATCAGCACCCTGGGATGGC
AGCGCAAGGAG
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