mRNA_E_fasciculatus_S2_contig8365.16499.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8365.16499.1
Unique NamemRNA_E_fasciculatus_S2_contig8365.16499.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8365.16499.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J869_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.430e-25
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 3 
Query:  147 MGTATSSPASGSGEAGKQATAVDQQQQDNGGPWEVDLAIPFEEITDLRPLADGTGC 314
            MGTATSSPA GSG+AGKQA+ VDQQQQD+GGPWEVDLAIPFEEITD+RPLADGTGC
Sbjct:    1 MGTATSSPARGSGQAGKQASTVDQQQQDDGGPWEVDLAIPFEEITDIRPLADGTGC 56
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8365.16499.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Protein1.430e-2589.29kinase domain-containing protein n=2 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8365contigE_fasciculatus_S2_contig8365:2121..2706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.5728793-CDS-E_fasciculatus_S2_contig8365:2120..22201696842495.5728793-CDS-E_fasciculatus_S2_contig8365:2120..2220Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8365 2121..2220 +
1696842495.5831387-CDS-E_fasciculatus_S2_contig8365:2490..26691696842495.5831387-CDS-E_fasciculatus_S2_contig8365:2490..2669Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8365 2491..2669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.595211-UTR-E_fasciculatus_S2_contig8365:2669..27061696842495.595211-UTR-E_fasciculatus_S2_contig8365:2669..2706Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8365 2670..2706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8365.16499.1prot_E_fasciculatus_S2_contig8365.16499.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8365 2121..2669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8365.16499.1

>prot_E_fasciculatus_S2_contig8365.16499.1 ID=prot_E_fasciculatus_S2_contig8365.16499.1|Name=mRNA_E_fasciculatus_S2_contig8365.16499.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
VLENTDHTQTTQDQSTEFSVDARCIESFGALGHVRCGKSSKLLPRIRSSW
GRLPLPQLAEVGKPGNRLPLLTNSSKITVGHGKWTLQSPSKR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8365:2121..2706+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8365.16499.1 ID=mRNA_E_fasciculatus_S2_contig8365.16499.1|Name=mRNA_E_fasciculatus_S2_contig8365.16499.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=586bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8365:2121..2706+ (Ectocarpus fasciculatus EfasUO2)
GTTCTCGAGAACACCGACCATACCCAGACAACACAGGATCAATCGACCGA
GTTTTCTGTCGACGCGCGATGCATTGAATCGTTCGGGGCATTGGGGCACG
GTGAGCATATCAACCAAAGGCACCCGCGGCCAAAAAGTTCGGTTGCATTG
CGGGCACATTGCGGAGCGTCTACATGGTCTACACAGCAGTACTGCAACTG
CAACTCTGACTGCACAGCACCAACAAACAGGTCCTTGTATGTTGCTCAGG
AAGCCTCCCCCACTACTGCTGTCGGGCTACCACTCGTCGCGTCCCAGCGA
AAAGGAAAAATTCCCCCTTCTTTCTGTTCGCGTGCTTTCGTCCCCATGCT
GAACACCTTTTGCGCTCAAGTGAGGTGTGGCAAAAGCTCGAAATTGCTGC
CTAGAATACGGTCATCATGGGGACGGCTACCTCTTCCCCAGCTAGCGGAA
GTGGGGAAGCCGGGAAACAGGCTACCGCTGTTGACCAACAGCAGCAAGAT
AACGGTGGGCCATGGGAAGTGGACCTTGCAATCCCCTTCGAAGAGATAAC
CGACCTTCGCCCTCTTGCAGATGGAACGGGGTGCAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8365:2121..2706+

>mRNA_E_fasciculatus_S2_contig8365.16499.1 ID=mRNA_E_fasciculatus_S2_contig8365.16499.1|Name=mRNA_E_fasciculatus_S2_contig8365.16499.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8365:2121..2706+ (Ectocarpus fasciculatus EfasUO2)
GTTCTCGAGAACACCGACCATACCCAGACAACACAGGATCAATCGACCGA
GTTTTCTGTCGACGCGCGATGCATTGAATCGTTCGGGGCATTGGGGCACG
TGAGGTGTGGCAAAAGCTCGAAATTGCTGCCTAGAATACGGTCATCATGG
GGACGGCTACCTCTTCCCCAGCTAGCGGAAGTGGGGAAGCCGGGAAACAG
GCTACCGCTGTTGACCAACAGCAGCAAGATAACGGTGGGCCATGGGAAGT
GGACCTTGCAATCCCCTTCGAAGAGATAA
back to top