mRNA_E_fasciculatus_S2_contig8360.16495.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ9_9PHAE) HSP 1 Score: 382 bits (981), Expect = 8.710e-130 Identity = 175/201 (87.06%), Postives = 188/201 (93.53%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCDLRNPKRGAKCDVFADDETLKEYDTVIINSGAHPRSLDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHG-GCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAEGYQ 601
IAFYRNDFLDTTT R+AF DG CD RNPKR A+C+VFADD+TLKEYDT+IINSGAHPRSLDEYRE METASK++TASMKRLHGDDALLIVRNTPPGHG CTERTFDGPVDV+TALDLV+SGPH Y W RFP+YNAILEEAFL NATDGW ELDAYTPTLLRPD+HLGGDE+PDCLHYCIPGPIDHWVRLLYNMLLA+GYQ
Sbjct: 179 IAFYRNDFLDTTTRRSAFWDGFCDSRNPKRNAQCEVFADDDTLKEYDTLIINSGAHPRSLDEYREAMETASKKMTASMKRLHGDDALLIVRNTPPGHGVTCTERTFDGPVDVDTALDLVASGPHQYQWGRFPKYNAILEEAFLSNATDGWKELDAYTPTLLRPDFHLGGDENPDCLHYCIPGPIDHWVRLLYNMLLAKGYQ 379
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL51_ECTSI) HSP 1 Score: 379 bits (974), Expect = 6.490e-129 Identity = 173/201 (86.07%), Postives = 188/201 (93.53%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCDLRNPKRGAKCDVFADDETLKEYDTVIINSGAHPRSLDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHG-GCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAEGYQ 601
IAFYRNDFLDTTT R++F DG CD RNPKR A+C+VFADD+TLKEYDT+IINSGAHPRSLDEYR++METASKELT SMKRLHGDDALLIVRNTPPGHG CTERTFDGPVDV+TALDLV+SGPH Y W RFPEYNAILEEAFL NATDGW ELDAYTPTLLRPD+HLGGD++PDCLHYCIPGPIDHW+RLLYNMLLA+GYQ
Sbjct: 166 IAFYRNDFLDTTTRRSSFWDGFCDSRNPKRNAQCEVFADDDTLKEYDTLIINSGAHPRSLDEYRDSMETASKELTVSMKRLHGDDALLIVRNTPPGHGVTCTERTFDGPVDVDTALDLVASGPHQYQWGRFPEYNAILEEAFLINATDGWKELDAYTPTLLRPDFHLGGDDNPDCLHYCIPGPIDHWIRLLYNMLLAKGYQ 366
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL53_ECTSI) HSP 1 Score: 377 bits (968), Expect = 7.660e-128 Identity = 171/200 (85.50%), Postives = 187/200 (93.50%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCDLRNPKRGAKCDVFADDETLKEYDTVIINSGAHPRSLDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHGGCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAEGYQ 601
IAFYRNDFLDTTT R+AF DG CD RNPKR ++C+VFADD TL+EYDT+IINSGAHPRSLDEYR++M TASKELTASMKRLHGDDALLIVRNTPPGHGGC+ERTFDGPVDV+TALDLV+SGPH Y W RFPEYNA+LEEAFL NATDGW ELDAYTPTLLRPD+HLGGD++PDCLHYCIPGPI HWVRLLYNMLLA+GYQ
Sbjct: 178 IAFYRNDFLDTTTRRSAFWDGFCDSRNPKRNSQCEVFADDYTLEEYDTLIINSGAHPRSLDEYRDSMGTASKELTASMKRLHGDDALLIVRNTPPGHGGCSERTFDGPVDVDTALDLVASGPHQYQWGRFPEYNAMLEEAFLINATDGWKELDAYTPTLLRPDFHLGGDDNPDCLHYCIPGPIYHWVRLLYNMLLAKGYQ 377
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U7_9PHAE) HSP 1 Score: 268 bits (685), Expect = 1.910e-88 Identity = 120/135 (88.89%), Postives = 129/135 (95.56%), Query Frame = 2
Query: 200 METASKELTASMKRLHGDDALLIVRNTPPGHG-GCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAEGYQ 601
METASKE+TASMKRLHGDDALLIVRNTPPGHG CTERTFDGPVDV+TA+DLV+SGPH Y W RFPEYNAILEEAFLGNATDGW ELDAYTPTLLRPD+HLGGDE+PDCLHYCIPGPIDHWVRLLY+MLLA+G+Q
Sbjct: 1 METASKEITASMKRLHGDDALLIVRNTPPGHGVTCTERTFDGPVDVDTAIDLVASGPHQYQWGRFPEYNAILEEAFLGNATDGWKELDAYTPTLLRPDFHLGGDENPDCLHYCIPGPIDHWVRLLYSMLLAKGHQ 135
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW9_9PHAE) HSP 1 Score: 211 bits (536), Expect = 2.920e-62 Identity = 108/202 (53.47%), Postives = 134/202 (66.34%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCD------LRNPKRGAKCDVFADDETLKEYDTVIINSGAHPRSLDEYRETMETASKELTASMKRLHGDD-ALLIVRNTPPGHGGCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLL 586
+ F RND LDT T + + C+ L N R C +FA D TL+E+DT+++NSGAHPR E+ ME ++K LT+SMKRLHG+D A+L+VRNT PGH GCTER FD PV+ AL LV+ P SY WD F N L++AF + GW LDAY+PTLLRPD H+G + DCLHYCIPGP DHW LLYN+LL
Sbjct: 209 LRFMRNDVLDTRT-KPRYRSVRCEESVGGALVNNTR---CRIFATDATLREFDTLVVNSGAHPRPAAEFGREMEASAKALTSSMKRLHGEDKAILVVRNTVPGHWGCTERMFDAPVNKTIALKLVAEAPDSYEWDSFESRNVQLQKAF--SPDRGWTLLDAYSPTLLRPDSHIG---NSDCLHYCIPGPADHWALLLYNILL 401
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR2_ECTSI) HSP 1 Score: 204 bits (518), Expect = 2.740e-59 Identity = 103/202 (50.99%), Postives = 137/202 (67.82%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCDLRNPKRG---AKCDVFADDETLKEYDTVIINSGAHPR--SLDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHGGCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAE 592
+++YRNDFLDT LDG R + ++C VFADD TL +YDT+++N+GAH + ++ Y ++TA + LTASM+RLHGD+A+L+VRNT PGHG +R F GPV+++TALDLV GP + W + N +LEEAF AT GW LDAY+PT+LR D H + D LHYC+PGPIDHWV LLYN+LL +
Sbjct: 240 LSWYRNDFLDTR------LDGFDTPRCEEPDISISQCMVFADDATLSQYDTLLVNAGAHRQLGGVEAYGSMIKTAGESLTASMRRLHGDNAILVVRNTVPGHGESFDRMFTGPVNLDTALDLVEKGPPEFEWTTILDKNTLLEEAF--EATHGWTLLDAYSPTILRADSHAS---ATDGLHYCLPGPIDHWVVLLYNILLEK 430
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J3_9PHAE) HSP 1 Score: 201 bits (512), Expect = 3.490e-58 Identity = 107/203 (52.71%), Postives = 139/203 (68.47%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCDLRNPKRGAKCDVFAD---DETLKEYDTVIINSGAHPRS--LDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHGGCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDG-WIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAE 592
+++YRNDFLDT T + F C+ + + C VFA D TL ++DT+++NSGAH RS L+ Y M+ AS+ LT SM+RLHGD+A+L+VRNT PGHG +R F GPVD++TALDLV+ GP Y W F + N +LEEAF AT+G W LDAY+PT+LR D H + D LHYC+PGPIDHWV LLYN+LL +
Sbjct: 255 LSWYRNDFLDTRT--DGFDTVHCEDPDASM-SHCMVFAGMYHDATLTQFDTLVVNSGAHLRSGGLEAYGSMMKNASESLTTSMRRLHGDNAILVVRNTVPGHGESFDRMFGGPVDLDTALDLVAKGPPRYKWTTFGDRNKLLEEAF--EATNGGWTLLDAYSPTILRADSHAS---ATDGLHYCLPGPIDHWVVLLYNILLEK 449
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G218_ECTSI) HSP 1 Score: 193 bits (491), Expect = 1.340e-57 Identity = 94/170 (55.29%), Postives = 124/170 (72.94%), Query Frame = 2
Query: 92 GAKCDVFADDETLKEYDTVIINSGAHPRS--LDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHGGCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDG-WIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAE 592
G K +FADD TL ++DT+++N+GAH RS + Y M++AS+ LT+SM+RLHGD+A+L+VRNT PGHG +R F GPVD++TALDLV+ GP Y W F + N +LEEAF AT G W LDAY+PT+LR D+H ++ LHYC+PGPIDHWV LLYN+LL +
Sbjct: 67 GRKGLLFADDATLSQFDTLVVNAGAHRRSGGMKAYGLMMKSASESLTSSMRRLHGDNAILVVRNTVPGHGESFDRMFGGPVDLDTALDLVAKGPPMYKWTTFGDRNKLLEEAF--EATHGGWTLLDAYSPTILRADFHASEEDG---LHYCLPGPIDHWVVLLYNILLEK 231
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y7_9PHAE) HSP 1 Score: 187 bits (474), Expect = 4.240e-54 Identity = 97/202 (48.02%), Postives = 134/202 (66.34%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCDLRNPKRG---AKCDVFADDETLKEYDTVIINSGAHPR--SLDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHGGCTERTFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLLAE 592
+++YRND+LDT LDG R + ++C + D TL +YDT+++N+GAH + ++ Y ++TA++ LTASM+RLHGD A+L+VRNT PGHG +R F GPV+++TALDLV GP + W + N +LEEAF +AT G LDAY+PT+LR D H + D LHYC+PGPIDHWV LLYN+LL +
Sbjct: 119 LSWYRNDYLDTR------LDGFDTPRCEEPDISISQCMTY--DATLSQYDTLLVNAGAHRQLGGVEAYGSMIKTAAESLTASMRRLHGDSAILVVRNTVPGHGESFDRMFTGPVNLDTALDLVEKGPPEFEWTTIRDKNTLLEEAF--DATHGRTLLDAYSPTILRADSHAS---ATDGLHYCLPGPIDHWVVLLYNILLEK 307
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU41_9PHAE) HSP 1 Score: 185 bits (469), Expect = 3.520e-52 Identity = 106/230 (46.09%), Postives = 139/230 (60.43%), Query Frame = 2
Query: 2 IAFYRNDFLDTTTWRNAFLDGLCDLRNPKRGA-KCDVFA-------------------------DDETLKEYDTVIINSGAHPRS--LDEYRETMETASKELTASMKRLHGDDALLIVRNTPPGHGGCTER-------TFDGPVDVETALDLVSSGPHSYLWDRFPEYNAILEEAFLGNATDGWIELDAYTPTLLRPDYHLGGDESPDCLHYCIPGPIDHWVRLLYNMLL 586
+++YRND+LDT T + F C+ +P A +C VFA DD TL ++DT+++N+GAH RS L+ Y M+ AS+ LT+SM+RLHGD+A+L+VRNT PGHG ER F GPVDV+TALDLV G YLW F + N +LEEAF+ A W LDAY+PT+LR D H ++ LHYC+PGPID+WV LLYN+LL
Sbjct: 191 LSWYRNDYLDTRT--DGFDTVHCE--DPDLSASRCVVFAGMASIKMEMVRAATMQCQPALMFIADDATLIQFDTLVVNAGAHRRSGGLEAYGSMMKNASEILTSSMRRLHGDNAILVVRNTVPGHGESYERWETAEEKMFSGPVDVDTALDLVEKGRPGYLWSTFGDKNKLLEEAFVA-AHGSWTLLDAYSPTILRADSHPSANDG---LHYCVPGPIDNWVVLLYNILL 412 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8360.16495.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8360.16495.1 >prot_E_fasciculatus_S2_contig8360.16495.1 ID=prot_E_fasciculatus_S2_contig8360.16495.1|Name=mRNA_E_fasciculatus_S2_contig8360.16495.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp METASKELTASMKRLHGDDALLIVRNTPPGHGGCTERTFDGPVDVETALDback to top mRNA from alignment at E_fasciculatus_S2_contig8360:272..1465+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8360.16495.1 ID=mRNA_E_fasciculatus_S2_contig8360.16495.1|Name=mRNA_E_fasciculatus_S2_contig8360.16495.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1194bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8360:272..1465+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8360:272..1465+ >mRNA_E_fasciculatus_S2_contig8360.16495.1 ID=mRNA_E_fasciculatus_S2_contig8360.16495.1|Name=mRNA_E_fasciculatus_S2_contig8360.16495.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8360:272..1465+ (Ectocarpus fasciculatus EfasUO2)back to top |