mRNA_E_fasciculatus_S2_contig835.16486.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig835.16486.1
Unique NamemRNA_E_fasciculatus_S2_contig835.16486.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig835.16486.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W8_ECTSI)

HSP 1 Score: 482 bits (1241), Expect = 6.630e-166
Identity = 282/328 (85.98%), Postives = 289/328 (88.11%), Query Frame = 1 
Query:   97 IPLMAKRAGCCEAKNTQRQRQHHQXHQQRCSAKGSRLVSIVDTHDIAYWSQWRLAIHGVCARFEAATQIEADAWSRERLDHVSISRQQALSSEVRHLETQLGKHTSMNAKLEAALCENAEALATAESARIAAAAAVSRLQAQISYDQETAKASARDLEEKISFSTIACQGLEESLQQAQEAKRQAEEKGEGLLRESARTDDELREARLAMSRALEEARAEKERREALQGDLVALREKYSALKRRFVDAGRKVEAVRGERXXXXXXXXXXXDKLADVEKFQSSNRGQALDRMEQDLASERMQRVELEADRDDLQSQLAAALQAAARS*P 1080
            +P MAKR G    KN QRQRQ    H     AKGS+L++IVD HDIAYWSQWRLAIHGVCARFEAA Q+EADAWSRERLDHVSISRQQALSSEVRHLETQLGKHTSMNAKLEAALCENA ALATAESARIAAAA VSRLQAQISYDQETAKASARDLEEKIS STIA QGLEESLQQ QEAKRQAE K EGLLRESARTD+ELREARLA+SRALEEARAEKERREALQ DL ALREKYSALKRRFVDAGRKVEAVRGER           DKLADVEKFQSSNRGQALDRMEQDLASERMQRVELEADRDDLQSQLAAALQAAARS P
Sbjct:    1 MPHMAKRDG----KNAQRQRQQQHRH----CAKGSKLLNIVDAHDIAYWSQWRLAIHGVCARFEAAAQVEADAWSRERLDHVSISRQQALSSEVRHLETQLGKHTSMNAKLEAALCENAGALATAESARIAAAATVSRLQAQISYDQETAKASARDLEEKISLSTIAYQGLEESLQQVQEAKRQAEAKCEGLLRESARTDEELREARLAISRALEEARAEKERREALQSDLTALREKYSALKRRFVDAGRKVEAVRGERDALRQERATLQDKLADVEKFQSSNRGQALDRMEQDLASERMQRVELEADRDDLQSQLAAALQAAARSWP 320
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig835.16486.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.630e-16685.98protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig835contigE_fasciculatus_S2_contig835:23509..26703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1644
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011960.1
Cds size972
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.487595-UTR-E_fasciculatus_S2_contig835:23508..240751696842494.487595-UTR-E_fasciculatus_S2_contig835:23508..24075Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig835 23509..24075 -
1696842494.5299194-UTR-E_fasciculatus_S2_contig835:26598..267031696842494.5299194-UTR-E_fasciculatus_S2_contig835:26598..26703Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig835 26599..26703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.4986596-CDS-E_fasciculatus_S2_contig835:24075..243031696842494.4986596-CDS-E_fasciculatus_S2_contig835:24075..24303Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 24076..24303 -
1696842494.5084705-CDS-E_fasciculatus_S2_contig835:24989..253221696842494.5084705-CDS-E_fasciculatus_S2_contig835:24989..25322Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 24990..25322 -
1696842494.519149-CDS-E_fasciculatus_S2_contig835:26187..265981696842494.519149-CDS-E_fasciculatus_S2_contig835:26187..26598Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 26188..26598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig835.16486.1prot_E_fasciculatus_S2_contig835.16486.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig835 24076..26598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig835.16486.1

>prot_E_fasciculatus_S2_contig835.16486.1 ID=prot_E_fasciculatus_S2_contig835.16486.1|Name=mRNA_E_fasciculatus_S2_contig835.16486.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=324bp
MAKRAGCCEAKNTQRQRQHHQHHQQRCSAKGSRLVSIVDTHDIAYWSQWR
LAIHGVCARFEAATQIEADAWSRERLDHVSISRQQALSSEVRHLETQLGK
HTSMNAKLEAALCENAEALATAESARIAAAAAVSRLQAQISYDQETAKAS
ARDLEEKISFSTIACQGLEESLQQAQEAKRQAEEKGEGLLRESARTDDEL
REARLAMSRALEEARAEKERREALQGDLVALREKYSALKRRFVDAGRKVE
AVRGERDALRQERATLQDKLADVEKFQSSNRGQALDRMEQDLASERMQRV
ELEADRDDLQSQLAAALQAAARS*
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mRNA from alignment at E_fasciculatus_S2_contig835:23509..26703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig835.16486.1 ID=mRNA_E_fasciculatus_S2_contig835.16486.1|Name=mRNA_E_fasciculatus_S2_contig835.16486.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3195bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig835:23509..26703- (Ectocarpus fasciculatus EfasUO2)
CTGTACACCACCTCCGTTGCTAGATCGCCAACGAATTTCCCACCATCGCA
TGGGGTAACTTGTACATCAGTTGCCTGTCTCCTTTATTGCGTCTAAATCC
CGCTCATGGCAAAACGGGCTGGCTGTTGTGAAGCTAAAAATACTCAACGA
CAACGTCAACATCACCAACATCACCAGCAGCGTTGCTCTGCTAAGGGCAG
TAGGCTGGTGAGCATCGTTGATACGCACGACATCGCGTACTGGAGCCAGT
GGCGCCTAGCCATACACGGGGTTTGCGCCCGATTTGAAGCTGCGACACAG
ATCGAAGCGGACGCATGGTCTCGAGAACGACTGGATCATGTCAGCATCTC
AAGGCAGCAGGCGCTTAGTAGCGAAGTGAGGCATCTCGAGACTCAGCTCG
GCAAACACACGAGCATGAATGCCAAGCTGGAGGCGGCGTTGTGCGAGAAC
GCGGAGGCACTCGCCACGGCAGAGTCAGCGAGGATAGCGGCGGCAGCTGC
TGTCAGCCGATTGCAGGTCAGCGGCTTGGTTGGCACGTGTTGCACTACCG
ACGTAGCGAAGGTGACGCAAGATATCACACCCCCTGGCGGATTCGCAACT
GTATGCGTCGTAAATGCTAACTAGATTACTCCACAGCAGAAAGAGTACCG
ATGCCGATCACGGCGGCGTTAGAACCATCTCGTGGAGATCTTGCCGATAA
CGTATGTATCTTTTGGATTGTGAATGCTCTTCGCCCTGGAGCAGTTGAGC
TCCGAAAATCGGTCCAGGGGGTGTGATATCTTGCGTCACCTACGGTATGT
ACATGTACGAGGGTTAGGTGTCTCGGCAACTGCTGAAGCCTCGGTGCCTC
GGAACACCGGCGGTCTCATTGGAAAGTGGCTTCACCGACAACAGTACGGT
GTCGATGATGCCTGTCCCTCATGAGAAAGGTCTGCATCATGCTGCGGCGG
AGACTTGATCGTCGCAGAGTGTCATGACACCAATGACCCGCTTGGTCTGT
ACAAGAAACAACCAAAGTTGTGTCTGTTTCCTCTGTTTCAGATAGACTAT
TGTACTGCTGTATTGTACCGAGGCAGGGTATAACTCTCTGTGTGTTCGTG
CAAACCCTGCCGTGGCGTATCTACACCGGTAGGGCGTGTCACAGATTGGT
GACTGCAGAAGTATTACTGCTGCCGACTGTATCTATCAGTCAGGCTAATA
GAGAGGGTCGCGGTTGTTTTAGGTAACGAGTAAATTTAGCTGTTAGTTGG
TTGGCAGGTGTCGGTAGGCGTGACACTCGAAGGCGAACCGCATGACAGAC
AACACTTGTGTTCCATGCGTGCACGATGTTTCAGACAACACTTGTGTTCC
ATGCTGTTCGTCGTGACTATGTGTACCACAGGCCCAGATATCCTACGACC
AGGAGACAGCGAAGGCCTCCGCCAGAGATCTGGAAGAGAAGATATCCTTT
TCCACCATCGCATGCCAAGGCCTAGAAGAATCGCTACAGCAGGCGCAGGA
GGCCAAGCGCCAAGCTGAAGAAAAGGGTGAGGGGTTGTTGCGGGAGTCGG
CGAGAACAGACGACGAATTGAGAGAGGCAAGGCTGGCGATGTCCAGAGCG
CTCGAGGAAGCGCGAGCAGAGAAGGAGAGGAGAGAGGCGCTACAGGGTGA
TCTGGTGGCCCTCCGCGAGAAGTACAGCGCTCTCAAGAGACGTTTCGTCG
ACGCGGGAAGAAAAGTGAGTGCAACGAGTTCATGTCGCTAGGGCCAAGCA
TGTAAATCTCGCGAATAGCCGGTAGAAAACGGTGCCCTTCCCATTGCCTG
AGCACATCATTTCGTTCACGAACGAAGAATGTGCGACTGGTCCTGCGTGC
CGCACAGCAACACCGGTAGTTGTTGTAGTCTGGAGACAGCTAGCATAGCG
CTCCCTGTTGTACGGTAGGAGGCGTCATATCGTCTATTGATAGTGTCAAA
CATTCCGCGGCGATGGTCGCGAAGAACGCAGCCACCGGGTGGTGAAACAA
AGGCAAAAGCAGAAACCACCCGGCGGTGTGCGGTACAACAGAAGCGGCGC
GCTCTTGTATCCTCTCCGAGAGGCAACTTAACCCAAGCGGCTTTTGGCCC
TATTATAGTGCTCGGGTTGGATAATAATTACAAGCTCTGAAACCGCCTTG
GCTCTGCTTGCCGCTTTCAATGCCACAGTCATCACACCAGGAGAAGGCAT
GTGATGACGTTCGTAGGAATGATGCATGGCGAGCTTCAGTAGCAGACGAC
TTTGGGAAATCACGTACTCGGCGCTTGGTGCGGTTCACGCTTGCTGCTGC
GGTGCGGTTTCCATTGCACGCGATGCAGCATGCAGCAACTTCGTGCTCCT
CTCGCTTGTACCGCCGCGACATCGAAACACTGACTGTTCCCCCGAGAAAG
GTTGAAGCCGTGCGGGGGGAACGAGACGCCTTGCGGCAAGAGCGAGCAAC
GCTACAAGACAAGCTGGCGGACGTGGAAAAGTTCCAGAGCTCTAACCGAG
GGCAGGCGTTGGATCGAATGGAGCAGGACCTTGCCTCCGAACGGATGCAA
AGGGTAGAGCTAGAGGCGGACAGGGACGACCTCCAGTCACAGTTGGCAGC
CGCTCTTCAGGCCGCAGCGCGTTCGTAACCATGTACATGCTGTCTGTCAG
CACTCTGGCTGTTTTCGCAGCCACGATCCACGAGATCCAAGCCAGATCCT
TTGACTTGTAAATCCTGAGAGTTTGAGAGGGTGCACACGGCTTTACGCTT
GGAAGTAGTGGTTTTCATGTTTGGAATCCACGATTAACCGGCGCTCGTAG
ATGAAAAAGTTTCAAATTTGTGCAGAAGGTTAAGGTAAACTCGTTTGGTC
TGGAACTGCAACACTTAGAGCCTGCAATGATGTGGTGATTGAGCATGTAT
TTGCAACCATGGTGTGGGTTGTGTGTATTGGGCGGGGAACCTGTAAAAAC
AAACCGAAGAGAGATGTTGTTGCAATAGATTTCACTCGATGCGGAGTGGC
AAGGGGGATGCAGTCAGAGTGATACTGCAGAAAGAAGTAAATTTGGGGTG
CAATGTGCAATGTGCCCGACAAGAGTGAGACCACGTACAAAAACAAAAAC
AATAACAATATGCACATCATGCAAGTACATACCTTGCCGATGCCACAAGT
TGATCGTGAATCAACAAGTGAAATTTCCTTTTCCAGACTTGGAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig835:23509..26703-

>mRNA_E_fasciculatus_S2_contig835.16486.1 ID=mRNA_E_fasciculatus_S2_contig835.16486.1|Name=mRNA_E_fasciculatus_S2_contig835.16486.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=972bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig835:23509..26703- (Ectocarpus fasciculatus EfasUO2)
ATGGCAAAACGGGCTGGCTGTTGTGAAGCTAAAAATACTCAACGACAACG
TCAACATCACCAACATCACCAGCAGCGTTGCTCTGCTAAGGGCAGTAGGC
TGGTGAGCATCGTTGATACGCACGACATCGCGTACTGGAGCCAGTGGCGC
CTAGCCATACACGGGGTTTGCGCCCGATTTGAAGCTGCGACACAGATCGA
AGCGGACGCATGGTCTCGAGAACGACTGGATCATGTCAGCATCTCAAGGC
AGCAGGCGCTTAGTAGCGAAGTGAGGCATCTCGAGACTCAGCTCGGCAAA
CACACGAGCATGAATGCCAAGCTGGAGGCGGCGTTGTGCGAGAACGCGGA
GGCACTCGCCACGGCAGAGTCAGCGAGGATAGCGGCGGCAGCTGCTGTCA
GCCGATTGCAGGCCCAGATATCCTACGACCAGGAGACAGCGAAGGCCTCC
GCCAGAGATCTGGAAGAGAAGATATCCTTTTCCACCATCGCATGCCAAGG
CCTAGAAGAATCGCTACAGCAGGCGCAGGAGGCCAAGCGCCAAGCTGAAG
AAAAGGGTGAGGGGTTGTTGCGGGAGTCGGCGAGAACAGACGACGAATTG
AGAGAGGCAAGGCTGGCGATGTCCAGAGCGCTCGAGGAAGCGCGAGCAGA
GAAGGAGAGGAGAGAGGCGCTACAGGGTGATCTGGTGGCCCTCCGCGAGA
AGTACAGCGCTCTCAAGAGACGTTTCGTCGACGCGGGAAGAAAAGTTGAA
GCCGTGCGGGGGGAACGAGACGCCTTGCGGCAAGAGCGAGCAACGCTACA
AGACAAGCTGGCGGACGTGGAAAAGTTCCAGAGCTCTAACCGAGGGCAGG
CGTTGGATCGAATGGAGCAGGACCTTGCCTCCGAACGGATGCAAAGGGTA
GAGCTAGAGGCGGACAGGGACGACCTCCAGTCACAGTTGGCAGCCGCTCT
TCAGGCCGCAGCGCGTTCGTAA
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