mRNA_E_fasciculatus_S2_contig835.16482.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig835.16482.1
Unique NamemRNA_E_fasciculatus_S2_contig835.16482.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig835.16482.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig835contigE_fasciculatus_S2_contig835:4851..5495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_012000.1
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.0198295-UTR-E_fasciculatus_S2_contig835:4850..48621696842494.0198295-UTR-E_fasciculatus_S2_contig835:4850..4862Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig835 4851..4862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.0336738-CDS-E_fasciculatus_S2_contig835:4862..49671696842494.0336738-CDS-E_fasciculatus_S2_contig835:4862..4967Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 4863..4967 +
1696842494.0456479-CDS-E_fasciculatus_S2_contig835:5345..54951696842494.0456479-CDS-E_fasciculatus_S2_contig835:5345..5495Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 5346..5495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig835.16482.1prot_E_fasciculatus_S2_contig835.16482.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig835 4863..5495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig835.16482.1

>prot_E_fasciculatus_S2_contig835.16482.1 ID=prot_E_fasciculatus_S2_contig835.16482.1|Name=mRNA_E_fasciculatus_S2_contig835.16482.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=85bp
MNRIATLMDPSGGNKADNVNSELVLGLHLQANDITVQQLPFPMTRIRLTG
DIPSIDHRRVRVACKSGADPVACEMVKLNYKFPR*
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mRNA from alignment at E_fasciculatus_S2_contig835:4851..5495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig835.16482.1 ID=mRNA_E_fasciculatus_S2_contig835.16482.1|Name=mRNA_E_fasciculatus_S2_contig835.16482.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=645bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig835:4851..5495+ (Ectocarpus fasciculatus EfasUO2)
ATCCAGGTTGTGATGAATCGCATCGCTACGCTTATGGACCCGAGCGGTGG
CAACAAAGCCGACAACGTGAACTCCGAACTGGTGCTCGGTCTTCACTTGC
AAGCTAACGACATCACGGTGAGCCTGTGGTGTTTGATGGCACCTTGCAAC
GTTCGTCTCGGATTGACCAATCCGTCGTCATGACAACGCCAGAACCGCTA
CCCCGACACTGGGCCGGTTAAGCAAACACAATGAATGCCACCACAACTTG
ATACGATTCCTTACAGGATCTCGAACGTATGCGACGGAGATCATACCCAT
CAAACTTCGGTTTGGCCTCTCTTCCCGGCAATTCTTTGCAAGAATAGAGG
ACTATGCACTTGGCTTCTGTTTCGTTTGCAACGCTGTGAAAGACTCCTTA
TCAACGAGGTATGGCAGAAGCCTCTTCCGTCGATCCGCCAGGCTTCTCTC
CAAGTTAACATGGATTTTTTCTTGCCGTCCTTCCCCCCCCGACAGGTGCA
ACAGCTTCCATTCCCCATGACAAGAATCCGATTGACGGGTGACATCCCTT
CCATAGACCACCGCCGCGTAAGAGTGGCTTGCAAATCGGGTGCAGACCCC
GTGGCATGCGAGATGGTCAAGCTTAACTATAAGTTTCCAAGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig835:4851..5495+

>mRNA_E_fasciculatus_S2_contig835.16482.1 ID=mRNA_E_fasciculatus_S2_contig835.16482.1|Name=mRNA_E_fasciculatus_S2_contig835.16482.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=255bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig835:4851..5495+ (Ectocarpus fasciculatus EfasUO2)
ATGAATCGCATCGCTACGCTTATGGACCCGAGCGGTGGCAACAAAGCCGA
CAACGTGAACTCCGAACTGGTGCTCGGTCTTCACTTGCAAGCTAACGACA
TCACGGTGCAACAGCTTCCATTCCCCATGACAAGAATCCGATTGACGGGT
GACATCCCTTCCATAGACCACCGCCGCGTAAGAGTGGCTTGCAAATCGGG
TGCAGACCCCGTGGCATGCGAGATGGTCAAGCTTAACTATAAGTTTCCAA
GGTAG
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