mRNA_E_fasciculatus_S2_contig8343.16480.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8343.16480.1
Unique NamemRNA_E_fasciculatus_S2_contig8343.16480.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: DNA (helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN1_ECTSI)

HSP 1 Score: 419 bits (1076), Expect = 4.740e-138
Identity = 225/257 (87.55%), Postives = 228/257 (88.72%), Query Frame = 1
Query:  310 RPVVSTRTLAVGDESAAPGKTEGASAEGL-GVEDAREALRSLFGHDDFRDGQ--------------------------EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
            R +VSTRTLAVGDESAAPGKTEGASAEGL G+EDAREALRSLFGHDDFRDGQ                          EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFV TLKG+KVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR
Sbjct:   11 RLIVSTRTLAVGDESAAPGKTEGASAEGLLGMEDAREALRSLFGHDDFRDGQAKDQHSRRWYALVYKPGLSFQTSTKEEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 267          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW0_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 6.130e-79
Identity = 160/269 (59.48%), Postives = 168/269 (62.45%), Query Frame = 1
Query:  421 LRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQT-------------------------------------------DALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISE---------------------------------WGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
            L +     +     + V+  LL  ++C   FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQ                                            D L  AGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFV TL+GVKVALFVVDEAHCISE                                 WGHNFRPDYLRLADFAKAARANARLALTA ATP+VAVDIANRLDIPPSNVNR
Sbjct:   13 LTTAMTDGNIAKNDDTVIDALL--KAC--FFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQVWYMLLNHNLFSLLSARQDIALCRGQLTVLVLLWMGLGTIAGVKDKLGPAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLQGVKVALFVVDEAHCISEGRVCCGAQRQMPLPVEAKRTSTEPVLHLLVSPQWGHNFRPDYLRLADFAKAARANARLALTAAATPQVAVDIANRLDIPPSNVNR 277          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: DEAD (box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G9_9STRA)

HSP 1 Score: 240 bits (613), Expect = 3.370e-69
Identity = 132/234 (56.41%), Postives = 151/234 (64.53%), Query Frame = 1
Query:  406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGV------------------------------------KVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
            D   AL+  FG+D+FRDGQEEVV  LL   S A + PTGAGKS+CYQLPG ++AR G G T+VVSPLIALMKDQ  AL A G+PCA+LDS+L+A    D Y+ +R G   LLYVSPERFNNERF S  KG                                     +VALFVVDEAHCISEWGHNFRPDYLRLA FA+AA A A LALTATATP+VA D+  RL I   +V R
Sbjct:   50 DVHAALKYYFGYDEFRDGQEEVVRLLLQQRSAAAILPTGAGKSLCYQLPGLVLARAGRGTTVVVSPLIALMKDQAQALAARGLPCARLDSSLDAAVARDAYDMVRRGRAGLLYVSPERFNNERFASAFKGALVHFARWAQLRTVERRGAAARARISSEAGLGALSKARVALFVVDEAHCISEWGHNFRPDYLRLAAFARAAGAAATLALTATATPRVAADMCARLAIAQHDVVR 283          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: Helicase (ATP-binding domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0SQ01_9ZZZZ)

HSP 1 Score: 218 bits (555), Expect = 7.570e-66
Identity = 111/197 (56.35%), Postives = 140/197 (71.07%), Query Frame = 1
Query:  403 EDAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNV 993
            E AR+ L+ +FG + FRDGQE VV +LL+G S   +FPTG GKS+CYQLP  ++     GLTLV+SPLIALMKDQ D L++ G P A+LDS+L   E   +++ + AG + LLYVSPER  NERF+ +L   K+AL  VDEAHCISEWGHNFRPDYL++A+ A+       LALTATATP+VA DIA    I P +V
Sbjct:   14 EHARKTLKEVFGFEGFRDGQEAVVMRLLSGRSVLAIFPTGGGKSLCYQLPSLVLD----GLTLVISPLIALMKDQLDFLVSRGAPAARLDSSLSREETLAVHDAMNAGRLKLLYVSPERLGNERFLRSLARRKIALLAVDEAHCISEWGHNFRPDYLKIAEIARQLGVERVLALTATATPQVAGDIAQGFGIAPGDV 206          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=3 Tax=root TaxID=1 RepID=A0A2E9MGE8_9BACT)

HSP 1 Score: 226 bits (575), Expect = 4.660e-65
Identity = 118/198 (59.60%), Postives = 139/198 (70.20%), Query Frame = 1
Query:  406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
            DAR AL+  F  DDFR GQ E V  LLAG S A VFPTG GKS+CYQLP  L+     GLTLVVSPLIALMKDQ DAL   G+  A+LDS+L   E   + + +R+G + LLYV+PERFNNERF   + G++++LF VDEAHCISEWGHNFRPDYL+LA FA+   A   LALTATATP+V  DI    DI P +  R
Sbjct:    4 DARAALKQHFDFDDFRPGQGEAVGHLLAGHSTAAVFPTGGGKSLCYQLPALLLP----GLTLVVSPLIALMKDQIDALQRRGIEAARLDSSLSLDEYRSVMDGVRSGQLRLLYVAPERFNNERFREAISGIRISLFAVDEAHCISEWGHNFRPDYLKLAGFARQYEAERVLALTATATPRVLDDICAGFDIRPEHAVR 197          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: ATP-dependent (DNA helicase RecQ n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6AZ83_9PROT)

HSP 1 Score: 217 bits (552), Expect = 8.570e-65
Identity = 108/193 (55.96%), Postives = 139/193 (72.02%), Query Frame = 1
Query:  400 VEDAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDI 978
            V  A+E L++ FGH++FR GQ +V+ ++L G+S A VFPTG+GKS+CYQLP  L+     GLTLVVSPL+ALMKDQ D+L+A G+  A+LDSTL   E       +R G + +LYV+PERF NERF   + G+ ++LF VDEAHCISEWGHNFRPDYL+L  FAK   A   LALTATATP+V +DI    ++
Sbjct:    5 VSKAQELLKTYFGHENFRAGQAQVIEQILNGKSSAAVFPTGSGKSLCYQLPALLLP----GLTLVVSPLLALMKDQIDSLLAKGIKAARLDSTLTNDEYQQTMRDVRNGVIKILYVAPERFMNERFRGAMAGINISLFAVDEAHCISEWGHNFRPDYLKLPIFAKTLGAKVVLALTATATPQVLLDIQKSFEV 193          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=1 Tax=Alkalilimnicola sp. S0819 TaxID=2613922 RepID=A0A833IRD6_9GAMM)

HSP 1 Score: 224 bits (570), Expect = 2.630e-64
Identity = 114/191 (59.69%), Postives = 140/191 (73.30%), Query Frame = 1
Query:  412 REALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPP 984
            R+AL+  FG D FR GQ  VV  LLAG+S A VFPTG GKS+CYQLP  L+     G+TLVVSPLIALMKDQ DAL A G+   +LDS+L A E   + +++RAG++ +LYV+PERFNNERF + +   ++ALF VDEAHCISEWGHNFRPDYL+LA +A+  +A   LALTATATP+V  DI    DI P
Sbjct:    6 RDALQQYFGFDQFRPGQAPVVDHLLAGQSAAAVFPTGGGKSLCYQLPALLLP----GVTLVVSPLIALMKDQIDALAARGIAARRLDSSLSAEEYRAVMDEVRAGTLRILYVAPERFNNERFRAAIARTRIALFAVDEAHCISEWGHNFRPDYLKLAGYARELQAERVLALTATATPQVLEDICRLFDIRP 192          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI0003A27C71)

HSP 1 Score: 223 bits (569), Expect = 3.300e-64
Identity = 117/194 (60.31%), Postives = 140/194 (72.16%), Query Frame = 1
Query:  409 AREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSN 990
            A E L++ FG + FRDGQ+  + KLLAGES   VFPTG GKS+CYQLP  L+     GLTLVVSPLIALM+DQ  AL A G+  A+LDS+    EV +IY Q+R G + LLYV+PER  NERF+S LK +++AL  VDEAHCISEWGHNFRPDYL+LA  A+  RA   LALTATATP VA DI  +  IP +N
Sbjct:    4 ALEILKTTFGLEAFRDGQQAAIDKLLAGESVLTVFPTGGGKSLCYQLPALLIE----GLTLVVSPLIALMQDQVAALHARGIAAARLDSSRTGDEVREIYRQLRRGELKLLYVAPERLQNERFLSLLKDLRIALLAVDEAHCISEWGHNFRPDYLKLAQLAQTLRAQRVLALTATATPSVAEDICRQFGIPAAN 193          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z062_9BACT)

HSP 1 Score: 223 bits (567), Expect = 6.950e-64
Identity = 115/198 (58.08%), Postives = 141/198 (71.21%), Query Frame = 1
Query:  406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
            D R  L+  FG DDF  GQ +VV +LLAG S A VFPTG GKS+CYQLP  ++     GLTLVVSPLIALMKDQ DAL   G+  A+LDS+L+  +   + + IR+G + LLYV+PERFNNERF   ++G+ ++LF VDEAHCISEWGHNFRPDYL+LA FA+  +A   LALTATATP+V  DI    DI P +  R
Sbjct:    4 DPRMTLKQQFGFDDFLPGQADVVERLLAGHSTAAVFPTGGGKSLCYQLPSLMLP----GLTLVVSPLIALMKDQIDALQRRGITAARLDSSLDKDQYRSVMDGIRSGQLRLLYVAPERFNNERFRQAIEGIAISLFAVDEAHCISEWGHNFRPDYLKLAGFARQFQAERILALTATATPRVLDDICAGFDIHPEHAVR 197          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: ATP-dependent (DNA helicase RecQ n=1 Tax=Desulforhopalus sp. IMCC35007 TaxID=2569543 RepID=A0A4U0ZQ34_9DELT)

HSP 1 Score: 212 bits (539), Expect = 8.390e-64
Identity = 108/196 (55.10%), Postives = 137/196 (69.90%), Query Frame = 1
Query:  406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNV 993
            D  + L+S FG D FR GQEEV+  LL GES A +FPTG+GKS+CYQLP  L+     GLTLV+SPLIALMKDQ D+L   G+   +LDS+L+     +    IR+G + +L+V+PER +NERF+S +KG +++L  VDEAHCIS WGHNFRPDYL+LA  AK       LALTATATP+V+ D+A   DI   NV
Sbjct:   14 DIYQTLKSHFGFDSFRSGQEEVITTLLGGESAAAIFPTGSGKSLCYQLPALLLP----GLTLVISPLIALMKDQIDSLKKQGIAAERLDSSLDEENYRNAINNIRSGQLKILFVAPERMSNERFLSIIKGQQLSLLAVDEAHCISAWGHNFRPDYLKLARVAKELCVERVLALTATATPQVSADMAEAFDIKKKNV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA4.740e-13887.55helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Uncharacterized6.130e-7959.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DEAD3.370e-6956.41box helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
Helicase7.570e-6656.35ATP-binding domain-containing protein (Fragment) n... [more]
RecQ4.660e-6559.60family ATP-dependent DNA helicase n=3 Tax=root Tax... [more]
ATP-dependent8.570e-6555.96DNA helicase RecQ n=1 Tax=Proteobacteria bacterium... [more]
RecQ2.630e-6459.69family ATP-dependent DNA helicase n=1 Tax=Alkalili... [more]
RecQ3.300e-6460.31family ATP-dependent DNA helicase n=1 Tax=Marinoba... [more]
RecQ6.950e-6458.08family ATP-dependent DNA helicase n=1 Tax=Candidat... [more]
ATP-dependent8.390e-6455.10DNA helicase RecQ n=1 Tax=Desulforhopalus sp. IMCC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8343contigE_fasciculatus_S2_contig8343:2466..6511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score419.1
Seed ortholog evalue1.9e-114
Seed eggNOG ortholog2880.D7FZN1
Model size1002
KEGG koko:K03654
KEGG Pathwayko03018,map03018
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-17_003860.1
EC3.6.4.12
Cds size972
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8343.16480.1prot_E_fasciculatus_S2_contig8343.16480.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8343 2496..6511 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.819981-UTR-E_fasciculatus_S2_contig8343:2465..24951696842493.819981-UTR-E_fasciculatus_S2_contig8343:2465..2495Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8343 2466..2495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.8464024-CDS-E_fasciculatus_S2_contig8343:2495..29271696842493.8464024-CDS-E_fasciculatus_S2_contig8343:2495..2927Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 2496..2927 +
1696842493.8577063-CDS-E_fasciculatus_S2_contig8343:3747..39121696842493.8577063-CDS-E_fasciculatus_S2_contig8343:3747..3912Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 3748..3912 +
1696842493.8663752-CDS-E_fasciculatus_S2_contig8343:4715..48021696842493.8663752-CDS-E_fasciculatus_S2_contig8343:4715..4802Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 4716..4802 +
1696842493.875252-CDS-E_fasciculatus_S2_contig8343:5411..55401696842493.875252-CDS-E_fasciculatus_S2_contig8343:5411..5540Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 5412..5540 +
1696842493.8856728-CDS-E_fasciculatus_S2_contig8343:5866..59681696842493.8856728-CDS-E_fasciculatus_S2_contig8343:5866..5968Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 5867..5968 +
1696842493.9009576-CDS-E_fasciculatus_S2_contig8343:6454..65111696842493.9009576-CDS-E_fasciculatus_S2_contig8343:6454..6511Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 6455..6511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8343.16480.1

>prot_E_fasciculatus_S2_contig8343.16480.1 ID=prot_E_fasciculatus_S2_contig8343.16480.1|Name=mRNA_E_fasciculatus_S2_contig8343.16480.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=324bp
MVTHRLRIMMTLVPILSRLEGRVVAFAARYPRLNSALPTASNSARGAGTG
SSRSSSSSSSSSSSSSSSSSSSSSPFLQRRRPRPYSLAGNTGARPVVSTR
TLAVGDESAAPGKTEGASAEGLGVEDAREALRSLFGHDDFRDGQEEVVAK
LLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQT
DALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFV
STLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTA
TATPKVAVDIANRLDIPPSNVNR*
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mRNA from alignment at E_fasciculatus_S2_contig8343:2466..6511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8343.16480.1 ID=mRNA_E_fasciculatus_S2_contig8343.16480.1|Name=mRNA_E_fasciculatus_S2_contig8343.16480.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4046bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8343:2466..6511+ (Ectocarpus fasciculatus EfasUO2)
GTGAACAAGCAGCAGAATCGTAGAGTCGGCATGGTCACGCATCGGTTGCG TATCATGATGACGCTGGTACCAATTCTGAGTCGCTTGGAAGGCAGGGTGG TGGCCTTCGCAGCGAGATATCCCCGACTGAACTCCGCATTACCCACCGCC AGCAACAGTGCCCGAGGTGCTGGTACGGGCAGCAGTAGAAGTAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCCCATTTCTTCAACGACGAAGACCACGCCCCTACTCTCTCGCTGGCAAC ACGGGGGCCAGGCCCGTAGTGTCAACACGGACGCTAGCAGTTGGAGATGA AAGCGCGGCGCCTGGCAAGACGGAAGGAGCCAGCGCTGAGGGTTTGGGCG TGGAGGATGCACGCGAGGCTCTGAGGTCGTTGTTCGGACACGACGACTTT CGGGACGGACAGGTGGGGATGCTGATCTGATTGCCACGTGGGTACACGAC CTCACGACCTATGTAATGGGGACAATCTGTACATTGGGTTTTGGCCATAT AGGAAAAAAGGGTCAGCACTCACTGCGGCGGTCAGCGCCGCACACGCTGT TCGCACACGATATTTTCAAATGTCACGCAAAGAGGTACTGCTTGGTGTAG ACGAGAGATCATGTTCCGCATGGGGCAGCCGCCTGGTCTTCCGAAGCAGA GCGCTTCCTTACGACGGTAGTGACGGATGGCAATATCGCGAAGAACGCTG ACACCGGTATTGACTCGATACTGAAGGCCTGTACGACGCACAAGACAAGA AGAGTAACACGAACGTTACCTACTGCTGAACACACAGCTTTGGCAGACAA CATGATCAACGACTGCTGTTGTACCGCTACATCAAATATGCCGATTCTCA TCCAGCGCCTTCTCTCGTCAATGCAACAACTGACTAAGTCTCAGTACCAC ATCCTCTTCCGTCATCTCTTTGCGTCCATCACACCCACCCATTCCCCGAT CGATTTCCCTACCGTACAAAACGTTGACCCTACGAAGTCGCCAGACTGCT GCCCCCCCGCCTCCTCCCGCCCACTGCAGTGTCATGATGAGTTATGATGA GCTCAACTTTAACTCCCCGTCAAGTTCGTTTTGAAGAAATGTGGTGACCA AACACCCCCCCATCGAAGTTTTCGAGTAAGAACAAGGCACGCTGTATCCA GAAAAGTGGTCGCGAGTGAGATGCACACACGACCCTCGACTGCCGCCACC GCACGCTCTTCTTGCTGTCTGTGCCGTTCCAGGAGGAAGTGGTTGCGAAG CTCCTCGCGGGAGAGTCGTGCGCAGGCGTTTTCCCAACGGGGGCCGGGAA ATCGATCTGCTACCAGCTCCCGGGCACCCTGATGGCCAGGCAGGGACTTG GGTTGACTCTCGTGGTGTCTCCACTAATCGCTCTCATGAAAGACCAGGTG CGGTATATGTGTAGAACGACAACCTTTTTTTTCTCTGAGCGCGCGTCAGG ACATGGCTCTCGGTCGGAGACAGTTTGCTGTTCTGGTTCTTCTGTGGGTG GGCTTGAGCACAATGAAGCACAATTGCGGGCGTGAGGAATAAGTTGGGCC CGCGTGAGGGATAGGTTGGCGCTGGCACCACCGTCTTGAGCTGGTTTGAC CGCCACTCTATCCCACAACCACCCCGCCGATGTACGCCTGATTCGCCACT TCACGCTACAGCGCTTGCCAGTTTGTACAGCATACGTAACGCATGGGGCA CAACTGAAGCGATTGCAGAAATACATTTCTTGAGCTGTTTCTTCCCGCGA GTGTAGTGGTGTATCATAGCCTCCTTGTTCTTTGGAGGGCGTTCGGGAGC GGGAATTGCCTGCTTTCCCCCCGAGAAACGACCTGCTTTTGCGGCGAGAG CAAACAAACAAGTATAGGGCGAGAGGGTGGGGAGGTGTGCCAACATAGAA AAGGGGCGGGCGTCCGGATCACAGATGACATGCACGATCGCTAGACGTTG GGCACCCCCCCTCTCCCTCCCAAGGAACCCTTTGCAAATCGAAAGGCCAC TACTCATTTGCGGGCTTACCCATGGGTCCATACCAAAGGCTGGTCTGGGG GCGCACAACTGCTTCCAAGCCCTTTTGGCCCCGTTTGCACCATTTTTTTG TTTGTCCTCTACCCATATGCCTCTAGACGCCCTAGATACTTGCAAGTCCA CCGCGAACTCCCTCTGTTCTTCATCGCTCGCCTTCGCGCTATCCTTCAAG ACCGACGCGTTGATTGCAGCGGGAGTTCCATGCGCCAAGCTGGATTCCAC CCTCGAGGCGCACGAGGTCTACGACATCTACGAGCAGGTAACATACGAAC AGCAACGACATGGGCGGGACGTAGGTTTGTTCCGCGGTATGGGGTTCCAG GATTCGGTGGTAAAGTGTCACGGTAAGATGGCCGCACCTCTGCGGGATCT CGTTCTTCAGCGACTGGGAATTGCGGAGATTTTTTAGTTTCCCTTACTAC TGTCGAGGCATGGCGGCGTGCTGTTGCTATGCTCTTGCGTCTTTTCTACT GGTAGTAGGACGTTCTAGGCTCTTGCTGTCTGACACTCGCTCGCGCTCGC TGGATGAGCAAGACATGTTGCTCACTTCGATGATGTGCATGCCCCCTGTT GCTTTTTGTCATGAGGTGGGAGCCATCTGTTAACTTAAGGCAAGACTTTC CCTCCCCGTCGTGTCATGGCCTATTATTGCTCTCTCGGCGTGCCAATCTG TCTGTAACCATCTGCGGCTTGCACGTACCTACGCCATCCGGCTTGTGTTG GGACTTGGGTCTACAAACAGACGTTGGAGGTCGGGGATTTTAACGCTCTC GACGCTCGCGAGTTCTGGCAGCATGTATTCTCCAAATACACAAGAAGCGA TTTTCTGAGATGATTTCATGTCGAATGCGTTGACGTGCGGCCGCAGATCC GCGCGGGAAGCGTGGCGCTGCTGTACGTGTCTCCGGAGCGTTTCAACAAC GAGCGTTTCGTCAGCACCCTAAAGGGGGTCAAGGTGGCCCTCTTCGTGGT GGACGAGGCCCACTGCATCAGCGAGGTAGGCGGCCAGGAGCCCGGCGATT ATTTGATCGGAGTGCGCCCCCCGCTCAGTAGAATTCAAATCTGCCTGCCC CCCCGCCGGGTAGCGACGGGTGTGCTGCGGCGCTCAGCGCCAGATGGCGC CACCTGTTGAGGCCAAGCGTACACCCCCCCCCCCCCCCTTCTCGCCCGAT TCTGCGTTTCTTTGCCCGCTGCTGTGGCTCCCTCTGCCCCGATGTTGTCA TGACAGCCAGCCTTCAACGACCCCCACCCCCCCCGCGATGTTACGAGACG AGCCTAAAAATATTACCAAAACGTCGTTTGCATCTCCTGGCCTCCCCACA GTGGGGGCATAATTTCCGGCCGGACTACTTGCGGCTAGCCGACTTTGCCA AGGCTGCGCGGGCGAACGCGCGTTTGGCCCTCACGGCCACGGCAACGCCC AAGGTGGGTTTGGAGGGCTGAGTGGCTCAAGCTCGTATTGGCGTTCCCCG CGAAGTCTGTTGTCGTACGTTGATCAGGCGACATCGCCGAAACCGAGAAC CGTTCTTTCCTGCTGCCTCCTACGAGTATATTCAACAAGGAAGGTTTCCG TGTCTTTTCATAAGGGTCGTGATTGGAGTGAAAGTGACCAACGGTAGAAA ACCACTTTTAGAGCACTACACTCCTACCGGAGGAATACGCTACTGTAGGC TCCCGAGATTTTTGTCGTGTCTGGTTCCCAAAACCTGGTCCAATTGCTCC TCTCTTTTTCAAGTCTGATCCTTCACGAACATGCTTGGCCTTAATCGAGA TCACAGGGTTACGTTCACTGTTCGCTGTGAATCAACGTACGTGGATCGAA ATATGAGAGTGGGTGTCTGCAAGACCCATGTGCTGGACGTATCCCGTGAG CATCATCGGAACCCGTATGTTTCCGCCTCGATCACACAGGTTGCCGTGGA TATCGCCAACCGTCTCGACATACCGCCTTCAAACGTCAACAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8343:2466..6511+

>mRNA_E_fasciculatus_S2_contig8343.16480.1 ID=mRNA_E_fasciculatus_S2_contig8343.16480.1|Name=mRNA_E_fasciculatus_S2_contig8343.16480.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=972bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8343:2466..6511+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCACGCATCGGTTGCGTATCATGATGACGCTGGTACCAATTCTGAG
TCGCTTGGAAGGCAGGGTGGTGGCCTTCGCAGCGAGATATCCCCGACTGA
ACTCCGCATTACCCACCGCCAGCAACAGTGCCCGAGGTGCTGGTACGGGC
AGCAGTAGAAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCCATTTCTTCAACGACGAAGACCACGCC
CCTACTCTCTCGCTGGCAACACGGGGGCCAGGCCCGTAGTGTCAACACGG
ACGCTAGCAGTTGGAGATGAAAGCGCGGCGCCTGGCAAGACGGAAGGAGC
CAGCGCTGAGGGTTTGGGCGTGGAGGATGCACGCGAGGCTCTGAGGTCGT
TGTTCGGACACGACGACTTTCGGGACGGACAGGAGGAAGTGGTTGCGAAG
CTCCTCGCGGGAGAGTCGTGCGCAGGCGTTTTCCCAACGGGGGCCGGGAA
ATCGATCTGCTACCAGCTCCCGGGCACCCTGATGGCCAGGCAGGGACTTG
GGTTGACTCTCGTGGTGTCTCCACTAATCGCTCTCATGAAAGACCAGACC
GACGCGTTGATTGCAGCGGGAGTTCCATGCGCCAAGCTGGATTCCACCCT
CGAGGCGCACGAGGTCTACGACATCTACGAGCAGATCCGCGCGGGAAGCG
TGGCGCTGCTGTACGTGTCTCCGGAGCGTTTCAACAACGAGCGTTTCGTC
AGCACCCTAAAGGGGGTCAAGGTGGCCCTCTTCGTGGTGGACGAGGCCCA
CTGCATCAGCGAGTGGGGGCATAATTTCCGGCCGGACTACTTGCGGCTAG
CCGACTTTGCCAAGGCTGCGCGGGCGAACGCGCGTTTGGCCCTCACGGCC
ACGGCAACGCCCAAGGTTGCCGTGGATATCGCCAACCGTCTCGACATACC
GCCTTCAAACGTCAACAGGTGA
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