mRNA_E_fasciculatus_S2_contig8343.16479.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8343.16479.1
Unique NamemRNA_E_fasciculatus_S2_contig8343.16479.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: HSP70 (protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.090e-56
Identity = 122/134 (91.04%), Postives = 126/134 (94.03%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAGXXXXXXXXXXXXXDMGGAGFPGG 402
            DKGRLSAD+IERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKV  + LDEADK TIETKISETIAWLD NQ+AEKEEYEEKQK+LE VCNPIIQKMAGGAGXXXXXXXXXXXX DMGGAGFP G
Sbjct:  509 DKGRLSADEIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVS-AQLDEADKKTIETKISETIAWLDANQNAEKEEYEEKQKELEGVCNPIIQKMAGGAGXXXXXXXXXXXX-DMGGAGFPAG 640          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: HSP70 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 7.400e-53
Identity = 118/139 (84.89%), Postives = 121/139 (87.05%), Query Frame = 1
Query:    7 GRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRD--------SALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAGXXXXXXXXXXXXX--DMGGAGF 393
            GRLSAD+IERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTIN+EK           S LD ADKTTIETKISETIAWLDGNQSAEKEEYEEKQK+LEAVCNPIIQKMAGGAG   XXXXXXXXXX  DMGGAGF
Sbjct:  575 GRLSADEIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINDEKAGRRVVPVKVASKLDAADKTTIETKISETIAWLDGNQSAEKEEYEEKQKELEAVCNPIIQKMAGGAGGMPXXXXXXXXXXXXDMGGAGF 713          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: Heat (shock protein 70 (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ7_FUCSE)

HSP 1 Score: 180 bits (456), Expect = 9.620e-52
Identity = 102/133 (76.69%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAGXXXXXXXXXXXXXDMGGAGFPG 399
            DKGRLSAD+IERMVEEAERYKAEDDVQK RVEGKN+LENYAYSMRNTINEEKV  S LD ADK+ IE+KISETIAWLD NQ+AEKEEYEEKQK+LE VC PIIQKMA   G             DMGGAGFPG
Sbjct:  364 DKGRLSADEIERMVEEAERYKAEDDVQKQRVEGKNALENYAYSMRNTINEEKVA-SQLDAADKSAIESKISETIAWLDTNQNAEKEEYEEKQKELEGVCTPIIQKMAAAGGGGMPGGMGGMP--DMGGAGFPG 493          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P9_HETAK)

HSP 1 Score: 154 bits (388), Expect = 9.670e-45
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAG 333
            DKGRLSAD+IERMVEEAERYKAED+V + R+E KNSLENYAY +++TI +EKV D  +D  DK+ +ETK+SE +AWLD NQSAEKEEYEEKQK+LE V  P+ +KMAGGAG
Sbjct:   40 DKGRLSADEIERMVEEAERYKAEDEVNRQRIEAKNSLENYAYQIKSTIGDEKVADK-IDAGDKSAVETKVSEILAWLDANQSAEKEEYEEKQKELEGVAQPVFEKMAGGAG 149          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: Heat (shock protein 70 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB83_VAULI)

HSP 1 Score: 150 bits (379), Expect = 7.310e-40
Identity = 76/111 (68.47%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAG 333
            DKGRLSAD+IERMVEEAERYKAED+V K R+E KN LENYAYS+RNT+N  ++ D  +D +DK+++++KI++TI WL+ NQ+AEKEEY+EKQK+LE V NPI+QKMAGGAG
Sbjct:  509 DKGRLSADEIERMVEEAERYKAEDEVNKQRIEAKNGLENYAYSLRNTLNGPEIGDK-MDPSDKSSLDSKINDTINWLESNQNAEKEEYQEKQKELENVANPILQKMAGGAG 618          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: 70 (kDa heat shock protein (Fragment) n=2 Tax=Leucocryptos marina TaxID=299206 RepID=B5A524_LEUMA)

HSP 1 Score: 139 bits (351), Expect = 8.630e-40
Identity = 72/111 (64.86%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAG 333
            DKGRLS DDIERMV+EAE+YKAED+  KSR+E KN LENYAYSMRN++++EK++D  +D ADK  ++T I ETI+WLD NQ  EK+E+E KQKDLEA+ NPI+ K   GAG
Sbjct:   13 DKGRLSKDDIERMVQEAEKYKAEDESNKSRIEAKNGLENYAYSMRNSMDDEKLKDK-IDAADKEKLKTAIDETISWLDANQMGEKDEFEAKQKDLEAIANPIMMKAYQGAG 122          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6YRE6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.520e-39
Identity = 73/112 (65.18%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKM--AGGA 330
            DKGRL+ DDIERMV+EAE+YK+ED+  K R+E KN LENYAY++RNT+N+EK++   LDE+DK  I+ K++ETI WLD NQSAEKEE+E KQK+LE V NPI+QK+  AGGA
Sbjct:   58 DKGRLTKDDIERMVQEAEKYKSEDEANKLRIEAKNGLENYAYNLRNTLNDEKLQ-GKLDESDKKAIDDKVTETINWLDANQSAEKEEFEAKQKELEGVANPIMQKLYAAGGA 168          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: Aste57867_4298 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCI7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.470e-39
Identity = 84/132 (63.64%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAGXXXXXXXXXXXXXDMGGAGFP 396
            DKGRL+ DDIERMV+EAE+YK+ED+  K R+E KN LENY+Y++RNT+N+EK++   +DE+DK  I+ K++ETI WLD NQSAEKEEYE KQK+LE + NPI+QK+   AG   XXXXXXXX  DMGGAG P
Sbjct:  194 DKGRLTKDDIERMVQEAEKYKSEDEANKLRIEAKNGLENYSYNLRNTLNDEKLQ-GKIDESDKKAIDDKVTETINWLDANQSAEKEEYEAKQKELEGIANPIMQKLYASAGGAPXXXXXXXX--DMGGAGAP 322          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1V9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.950e-39
Identity = 74/111 (66.67%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAG 333
            DKGRLSAD+IERMV+EAE+YKAED+  + RVE KNSLENY YSM++TI +EK+  S L E DK++I +KI E+I+WL+ N +AEKEEYE KQK+LEAV NPI+Q +AGGAG
Sbjct:   74 DKGRLSADEIERMVQEAEQYKAEDEANRLRVEAKNSLENYCYSMKSTIADEKLA-SKLSEEDKSSITSKIDESISWLEANPTAEKEEYEAKQKELEAVVNPILQSLAGGAG 183          
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HFD5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.520e-38
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCNPIIQKMAGGAG 333
            DKGRLS  DI+RMV EAE+YK+ED+  K R+E KN+LENYAY++RNT+N+EK++D  + E DK  I+ K++ETI WLD NQSAEKEE+E KQK+LE V NPI+QKM   AG
Sbjct:    1 DKGRLSQADIDRMVAEAEKYKSEDEANKIRIEAKNALENYAYNLRNTLNDEKLKDQ-ITEDDKKAIDDKVTETINWLDANQSAEKEEFEGKQKELEGVANPILQKMYAAAG 110          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8343.16479.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
HSP702.090e-5691.04protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A... [more]
HSP707.400e-5384.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Heat9.620e-5276.69shock protein 70 (Fragment) n=1 Tax=Fucus serratus... [more]
Hypothetical9.670e-4570.27protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Heat7.310e-4068.47shock protein 70 n=1 Tax=Vaucheria litorea TaxID=1... [more]
708.630e-4064.86kDa heat shock protein (Fragment) n=2 Tax=Leucocry... [more]
Uncharacterized1.520e-3965.18protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A... [more]
Aste57867_42984.470e-3963.64protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Hypothetical4.950e-3966.67protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized2.520e-3863.06protein (Fragment) n=2 Tax=Phytophthora kernoviae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8343contigE_fasciculatus_S2_contig8343:3..730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score197.6
Seed ortholog evalue3.7e-48
Seed eggNOG ortholog2880.D8LI58
Model size402
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
Exons2
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
Cds size402
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.7765265-CDS-E_fasciculatus_S2_contig8343:2..1731696842493.7765265-CDS-E_fasciculatus_S2_contig8343:2..173Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 3..173 +
1696842493.788532-CDS-E_fasciculatus_S2_contig8343:499..7301696842493.788532-CDS-E_fasciculatus_S2_contig8343:499..730Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8343 500..730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8343.16479.1prot_E_fasciculatus_S2_contig8343.16479.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8343 3..730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8343.16479.1

>prot_E_fasciculatus_S2_contig8343.16479.1 ID=prot_E_fasciculatus_S2_contig8343.16479.1|Name=mRNA_E_fasciculatus_S2_contig8343.16479.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=134bp
DKGRLSADDIERMVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINE
EKVRDSALDEADKTTIETKISETIAWLDGNQSAEKEEYEEKQKDLEAVCN
PIIQKMAGGAGGGGMPGGMPGGMPDMGGAGFPGG
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mRNA from alignment at E_fasciculatus_S2_contig8343:3..730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8343.16479.1 ID=mRNA_E_fasciculatus_S2_contig8343.16479.1|Name=mRNA_E_fasciculatus_S2_contig8343.16479.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=728bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8343:3..730+ (Ectocarpus fasciculatus EfasUO2)
GACAAGGGCCGCCTCAGCGCCGACGACATCGAGCGCATGGTGGAGGAGGC CGAGCGCTACAAGGCCGAGGACGACGTCCAGAAGAGCCGCGTGGAGGGCA AGAACTCGCTCGAGAACTACGCCTATTCGATGCGCAACACCATCAACGAG GAGAAGGTGCGTGACTCGGCAGTGTCGCGTTTTCCATGTCTTTTTAGTTT TGTTGTCCCGTACAGCAGTATGACAAGGTCATACGGGGGGGGATTCCTCT GTGGTTGTCGCATCGCCGTCCGCGTAGTCCTGCGTGTGGGGTTGTCCTGC GCATGCGTTTTCTCCTGGCTGGCTTGTTGAAGGAAAGGATGCAATCAACG ACCAAAATACTTGGTGTGGATGTACGTCTACGCTGAATCATTCACACCAC TATAAACCGGAAAGCCTTCCGTGCATTCCGTCCTCACCATTATTTCCACG CCTTGTCCACTTGTCGTTCCCGGAACGAAAAACAGGTTTCCACGCAGCTG GACGAGGCCGACAAGACGACGATCGAGACCAAGATCTCGGAGACCATCGC ATGGCTCGACGGCAACCAGTCCGCCGAGAAGGAGGAGTACGAGGAGAAGC AGAAGGACCTCGAGGCCGTGTGCAACCCCATCATCCAGAAGATGGCCGGC GGGGCGGGCGGCGGCGGCATGCCGGGGGGTATGCCCGGTGGCATGCCCGA CATGGGTGGCGCCGGGTTCCCCGGAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8343:3..730+

>mRNA_E_fasciculatus_S2_contig8343.16479.1 ID=mRNA_E_fasciculatus_S2_contig8343.16479.1|Name=mRNA_E_fasciculatus_S2_contig8343.16479.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=402bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8343:3..730+ (Ectocarpus fasciculatus EfasUO2)
GACAAGGGCCGCCTCAGCGCCGACGACATCGAGCGCATGGTGGAGGAGGC
CGAGCGCTACAAGGCCGAGGACGACGTCCAGAAGAGCCGCGTGGAGGGCA
AGAACTCGCTCGAGAACTACGCCTATTCGATGCGCAACACCATCAACGAG
GAGAAGGTGCGTGACTCGGCACTGGACGAGGCCGACAAGACGACGATCGA
GACCAAGATCTCGGAGACCATCGCATGGCTCGACGGCAACCAGTCCGCCG
AGAAGGAGGAGTACGAGGAGAAGCAGAAGGACCTCGAGGCCGTGTGCAAC
CCCATCATCCAGAAGATGGCCGGCGGGGCGGGCGGCGGCGGCATGCCGGG
GGGTATGCCCGGTGGCATGCCCGACATGGGTGGCGCCGGGTTCCCCGGAG
GG
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