mRNA_E_fasciculatus_S2_contig8341.16478.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8341.16478.1
Unique NamemRNA_E_fasciculatus_S2_contig8341.16478.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: RNase_PH (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 3.750e-131
Identity = 223/230 (96.96%), Postives = 225/230 (97.83%), Query Frame = 1
Query:    1 MEETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETLR 690
            MEETRRDGRR NQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAK+LRMER EGATLDVSFKPESGITS ADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITA VSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSC AVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAET+R
Sbjct:    1 MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Ribosomal (protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.210e-48
Identity = 112/236 (47.46%), Postives = 150/236 (63.56%), Query Frame = 1
Query:   19 DGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVS------------GRSVL-LDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETL 687
            DGR G+QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+P+ A ++VS++ + G  + ADAE E  +RR+LEE V  +RYPR+V+SV++QV+ DDG+VLSAA+NA  MAL++AGVEM GM ++ T C +   S            G S L LDP  +EE    AT ++A L+   G+L+ +  G +  EE FA  EAA     AV  ++R + E KV R+   L
Sbjct:    8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANL 243          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 176 bits (447), Expect = 1.010e-46
Identity = 103/220 (46.82%), Postives = 140/220 (63.64%), Query Frame = 1
Query:   13 RRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNR 672
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+  GATL+V+FK E G  S  D E E +LR + E +++   +PR VVS+ +QV+ DDGA+L+ A+NA  +AL++AGV M  +  ++TC I   +    + LDP ++E   AAAT   A      G+L+    G +S+E+YFAC E       +V +FVR+S E K N+
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSI---LEDGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Exosome (component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.020e-46
Identity = 104/220 (47.27%), Postives = 141/220 (64.09%), Query Frame = 1
Query:    4 EETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
            E+ R DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R E+   ATL+V FKPE G  S  D E E +LR++ E ++L   +PR V+SV +QV+ DDGA+L+ A+NA  +ALL+AGV M G+  ++TC I   +    + LDP  +E   AAAT   A+     GVL+    G +++ +YFAC E    G  +V +FVR++ E K
Sbjct:    5 EDRREDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTI---LEDGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETK 221          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Aste57867_8748 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 171 bits (434), Expect = 6.540e-45
Identity = 102/226 (45.13%), Postives = 140/226 (61.95%), Query Frame = 1
Query:    4 EETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAE 681
            +E R DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+ + ATL+V FK E G  +  D E EA+LR++ E +V    YPR V+S+ +QV+ DDG++L+ A+NA  +ALL+AG+ M  +  ++TC I   +    + LDP + E   AAAT   A      G+L+    G +S+ +YFAC E       +V SFVR+S E K  +  E
Sbjct:    5 DERRGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI---LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.170e-40
Identity = 93/226 (41.15%), Postives = 138/226 (61.06%), Query Frame = 1
Query:    1 MEETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREA 678
             E+ R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R E+ + AT++V FK + G  +  D E EA+L+++ + +V    YPR V+S+ +QV+ DDG++L+ A+NA  +ALL+AG+ M  +  ++TC I   +    + LDP   E   A A+   A      G+L+    G +++ +YFA  E       +V SFVR++ E K  + A
Sbjct:    6 QEDRRDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI---LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: 3' (exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN)

HSP 1 Score: 157 bits (396), Expect = 1.800e-39
Identity = 94/225 (41.78%), Postives = 140/225 (62.22%), Query Frame = 1
Query:   13 RRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAV--------LSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
            R+DGR GN++RP A+EQG L RADGSAR   G+++VLAAVYGP  A+  R E  + ATLDV FK E GI +  + E E ++R++   VVL   +PR V+S+++QVI D+G++         + A+NA ++AL++AGV M  +  + +C I       ++ LDP  AEE +A +    A  S   GVL+C   G +S+E+YFAC EA    + +V +F R+  ++K
Sbjct:   22 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSI---FDDGNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.120e-38
Identity = 98/220 (44.55%), Postives = 133/220 (60.45%), Query Frame = 1
Query:    7 ETRR-DGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
            ETRR DGR   +IRPL+ EQ +LNRADGSARF  G +SVLA+V GPA AK  R E+   A+L+V+FK E G  +  D E EA+LR++ E ++    +PR V+SV +QV+ DDG++LS A+NA  +ALL+AG+ M  +  +VTC I   +      LD    E   A A+   A      G+L+    G +S+  YFAC E       +V SFVR+S E K
Sbjct:    6 ETRREDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI---LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: U4/U6 (small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.320e-38
Identity = 94/217 (43.32%), Postives = 136/217 (62.67%), Query Frame = 1
Query:   13 RRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
            R DGR   +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E    ATLDV FK E G+ +  D E E +LR++ E ++L   +PRTV+S+ +QV+ DDG++L+ ++NA  +AL++AG+ M  +  ++TC +   +    + +DP   E   A AT   A  +    +L+    G +++E+YFAC E       +V +FVR+S E K
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITCSV---LEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717          
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54Q83_DICDI)

HSP 1 Score: 153 bits (386), Expect = 2.680e-38
Identity = 88/221 (39.82%), Postives = 141/221 (63.80%), Query Frame = 1
Query:    4 EETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKV 666
            E TR DGR  N IRP+ +EQG LN+ADGSA+F Q  + VLAAVYGP    + R E+   + ++V+F P  G T+  D E E L++ ++E ++L + YPRT +SVI+QV  DDG+++S A+NAA +ALL+AG+EM G+  SVT C     +  S+ +DP   EE  + A A+ +  S    ++  + +G++++++YF   + AS     + SF++L+ + ++
Sbjct:    4 EHTRNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVEVTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFN---NDGSIYVDPSTEEENQSKAIAIYSFSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKNRI 221          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RNase_PH3.750e-13196.96domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Ribosomal1.210e-4847.46protein S5 domain 2-type protein n=1 Tax=Tribonema... [more]
Uncharacterized1.010e-4646.82protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Exosome5.020e-4647.27component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202... [more]
Aste57867_87486.540e-4545.13protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized5.170e-4041.15protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A... [more]
3'1.800e-3941.78exoribonuclease family domain 2 n=1 Tax=Phytophtho... [more]
Uncharacterized1.120e-3844.55protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
U4/U61.320e-3843.32small nuclear ribonucleoprotein Prp4 n=1 Tax=Thrau... [more]
Uncharacterized2.680e-3839.82protein n=1 Tax=Dictyostelium discoideum TaxID=446... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8341contigE_fasciculatus_S2_contig8341:81..3840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score407.9
Seed ortholog evalue3.1e-111
Seed eggNOG ortholog2880.D7FVT2
Preferred nameEXOSC5
Model size2729
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons2
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1069@2759
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
EC3.6.4.13
Cds size693
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.7014825-UTR-E_fasciculatus_S2_contig8341:80..21161696842493.7014825-UTR-E_fasciculatus_S2_contig8341:80..2116Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8341 81..2116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.7196002-CDS-E_fasciculatus_S2_contig8341:2116..24851696842493.7196002-CDS-E_fasciculatus_S2_contig8341:2116..2485Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8341 2117..2485 -
1696842493.741675-CDS-E_fasciculatus_S2_contig8341:3516..38401696842493.741675-CDS-E_fasciculatus_S2_contig8341:3516..3840Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8341 3517..3840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8341.16478.1prot_E_fasciculatus_S2_contig8341.16478.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8341 2117..3840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8341.16478.1

>prot_E_fasciculatus_S2_contig8341.16478.1 ID=prot_E_fasciculatus_S2_contig8341.16478.1|Name=mRNA_E_fasciculatus_S2_contig8341.16478.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp
MEETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPA
KALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPR
TVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPV
SGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACC
EAASLGTTAVRSFVRLSAEQKVNREAETLR*
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mRNA from alignment at E_fasciculatus_S2_contig8341:81..3840-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8341.16478.1 ID=mRNA_E_fasciculatus_S2_contig8341.16478.1|Name=mRNA_E_fasciculatus_S2_contig8341.16478.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3760bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8341:81..3840- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGAAACTCGGAGAGACGGGAGGCGGGGCAACCAGATCCGCCCTCT CGCGGCAGAGCAGGGTATCCTCAATAGAGCGGACGGCTCCGCTCGCTTCG TGCAGGGCAACACTTCCGTCCTTGCGGCCGTCTACGGGCCTGCCCCGGCC AAGGCGTTGAGGATGGAGAGGCCAGAGGGTGCGACGTTAGACGTGAGCTT CAAGCCGGAGAGCGGGATAACGTCGCCCGCCGATGCGGAATCGGAGGCGC TGCTGCGGAGGTCGCTGGAGGAGGTGGTGCTGAGGTCGAGATATCCCAGG ACCGTGGTGTCAGTCATCATCCAGGTGTGCATCCGCATTTGTGTCAAGTT GAAGGGAACGAGGCAGGGTGGGTGTGAAGATGTTCATAAGAACTACAGCA GAACAACAGCAGCTAATTGTAGTGCTGCAACGCTGATGCTGGTAGATACG TCAGCTGAACATCACAGCACCAAACAGAATGCAAAGAACAGCAGTCGAAG GGACAGTAAGAGCCCCTTCGTACATGTGTATTGAGAAGTCTTGCCTCACA TGCATACCGACTACCAATGTGCCGCCTGCCAGCTCCTTCGGTCGGTACTC CATAGTATCTGCACCTCTGCACAAGCCGCGGAATGGGTATATATGCCGTT GGCGTCTTTTCTGTGTTGAAGTCGAACTCCCTGTAAGTGCTTGCTGGATC TGAGGCACGAGGCACACCATCACATTCTTGAATCGACGTATTTCAGGTTT AAGTGTTTTCTTTGGAATAGACCCTCTGCTGGAATGTCCTGGCGAAGGCA TTCCTGCGCCCAGCGAGCTGTTACACATGCCGCCGGTGGTGATGTTCCGG TTACGAAGCATTGATATAGTTGGCCACACTGCAGCATGTTGCAGCTCAAC TGCCGCAATGCTGCACTCACTCACGCGCAGGAGGTGCTGCCCCCGCCCGG CAGCGGTATGTTGACTGTGGTTGCTCGCTTGCGCATCGTTCGGCGAGCAT CGGTGAAGGGACAGCGTCGTGTTTTGCTTTTCACATATCGTACGTCCATT AGCCATGAACAGGGAACCTATTGACGCGCGCCCGTGTTTACCTTCCCCAT GCGCCCAAGATAGGCTAGCCTATGTCGTTAGCCACCTTGATGTTGTGCGC GCCTGATACAATGTAGAGTCACCGCTTAGGTTTGTTGATGGAGTTACCGA TGAAGTGACGCCAGACATGCGGTACGCTTTGCCGTTCACGCAAAACGCAA CGACCCGTTCTAAGCAGCACCCACCCTGATGTCGATTGTGCGCAATGTCT GTTTTTTCCGTTTTCCTTACATGCATCAAAAATCGACAATATACACGAAA AACAGGTGATTGTTGACGACGGGGCTGTTCTTAGTGCAGCTCTGAACGCT GCCACCATGGCCCTCCTCAACGCCGGGGTAGAGATGACGGGCATGGCCCT CTCCGTCACCTGCTGTATCACCGCCCCGGTCTCTGGCCGGTCCGTGCTCT TGGACCCGTGCAAGGCTGAGGAGATTGACGCCGCCGCCACCGCGGTCGTC GCCACTCTCTCCGCCGGCGGTGGAGTCCTGTCGTGCCGCGCCGTGGGTTC GATGAGCCAGGAGGAGTACTTCGCGTGCTGCGAGGCGGCGTCGCTGGGCA CGACGGCCGTGCGATCGTTCGTGAGGCTGTCCGCAGAGCAGAAGGTCAAC CGCGAAGCAGAGACTCTCAGATGACGATGGCAGCCTGCCCTGCGCGTGAA TGCAGCCTTTCGCAGCGTACTGTGGAGTCAAGGGCGCCTACCTGGATGTT GACTATCGTGGTCGAACCCACCTGACCGCTACTGCCACCACGCCCGTGAC GATGAGCTCGCCGGTTGTGTACGTCGATTAGCGTCGTAGGCAGCCGCTCT GCCATTGTGATAGCTGTGCAGCGCGTGTTACCCAGCGCTGGCAAGGTGTG GCGTGGCGTTGAAGTCGAGCCAGACTGTTGCTAGTGTTCGTGTGAGCTTC CGATGAAGATCCGCGCGCAGATTTAAGTCTCGTGATTCAAAAGCGTCGGT CGTGATCCAGGAGCGAGTTATTTTCGCTTTCGCCAAACGTTTTCCGGTTC GCCCATCGGGTTAGTGTTCAAGCAAGAGGCCCAGCAGAAGTTCCAAAACA TGCACCGGCAGCTGAAGAGTGCTGTGTTGATTAGCTCTGCCTTGATCTTG GCCTGCAACAGATGGTTGCTTTTTAGCCCAGCTAACAACAATATTGGGCT TGCGCGTGTGTCTAGCTTGCTCGCCACTTATGACAATGCTGCTCTGCGCG TAGTGGACAGTCGGCCTTCTTTGCCGTATTGCTGTACCAGTCGTCGACCG GCGAAGGCCATGACGCAAATAGTGGCGTAGCGTTGGTATGGAAGTGGCTG CATTCGGCTTTGGCGGGCCAGCTAGTCACTAATACTTTGGAAAAATGTGC GGTTTCGAATACTTAGAAAGATTTTGCGGTTTGACAGCCTCCAGCCTATT CGGTCGAGGCCTGCGCGCCCTACCTTGCCGAGTATGATCCCCTGAGAGGC TTTTGTCGGTGCCTTTGAGTCGTCTTGTCTCAGGGTACAGCAACTTTCGT GCCATCCCCCCCGTTTTGTTGTCTCGAGAAACGCTTTCGTGTCGATAGCG CAAACCTTCACGGACGTAAATCCTTGTGCCCGCCGGTGGTGGTTTCGTGG GTGCGGTGTGTGCCCCTTTATTGGAATGAGCGGGAGACTATCTCGAGGAG TACGAATGAGTGCTATTAGGCTGCTGCTCCAGATGGTCACTGCCATCTAG CGTGCGTGTGCTGTACAATATTTTGGAAACTGGTACAGTATGCGTAGGAG CCTTAACGCAAAGATTTGAAATGGAAACATGTGGGCGAACGCATAGTCTT CGGTTGAGTTGGAAGTTCTCCTTTCGGGATGCTGAAGAAGGAGGTGGAAG TGCCGTGGCGCGTTTCAGCTACTATCTGCAACGAATGCACTGTTGGGCTA CGGGAACGTTTGCATCTCTCTCCCCACGTTCACTGCAGCTTGAGCTCTCC ATCCCAACCTGGCCGTTGCCGTCCAAAACTTCGTCGATGATGTCAGCAAG ATACAGACGTGGGCCCTCATAGTTTGTGGGTTGGTGCAGTTATTCATGTG TACGGTGCCATTTAACGCCTGAGAAGCACCTGCTGGTTTTTTAGCAAGGT TTGAGCAGGCTACTATCATATTGCTTTACTACCTGGAGGAATCAGTGTAG TGCGGGCGGCTGAGCTTAACTTCTTATTGTACGCGTTTTGCTTTTGTTAG CTGGGCATGAGGTCGGCTAGTTATGGTCTGCATTGTCTGCAGTTTGTTGT GGTCTGTTCGTTGTTCAGTTTTGAATATGACATAAATGACATTATACATC TGGGTTTCGTAAAGCGCAGGCGAACTGGAACAACACCAGTTGGTTTTTGA TATCCCTTCACAACAAGGACTTCGGCGCTTCCCTTTGAATCCTGTCTCTG ACACTGGTTAAGTTTGTGCTGTGTAGACAATTTAATCTTTACTATTGGCG CTGTGTATATGCTTGCTTCAAACATCGAAAAGTTCTTAAAAGACGTCGGG AAAGTTTTCCCCCATGTACGTAGTCTGGGGTGCACATGGGGCGTAGATGC GGAAGCAAGTGGCGCGTGCTACCACTGCCCCCTCCTACCCCCCGTCAGAA TCAAGTGCCACCAACCACCACCACCCGGCGCAGCGCGATCTGCGACGGAT CACCCCTCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8341:81..3840-

>mRNA_E_fasciculatus_S2_contig8341.16478.1 ID=mRNA_E_fasciculatus_S2_contig8341.16478.1|Name=mRNA_E_fasciculatus_S2_contig8341.16478.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8341:81..3840- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGAAACTCGGAGAGACGGGAGGCGGGGCAACCAGATCCGCCCTCT
CGCGGCAGAGCAGGGTATCCTCAATAGAGCGGACGGCTCCGCTCGCTTCG
TGCAGGGCAACACTTCCGTCCTTGCGGCCGTCTACGGGCCTGCCCCGGCC
AAGGCGTTGAGGATGGAGAGGCCAGAGGGTGCGACGTTAGACGTGAGCTT
CAAGCCGGAGAGCGGGATAACGTCGCCCGCCGATGCGGAATCGGAGGCGC
TGCTGCGGAGGTCGCTGGAGGAGGTGGTGCTGAGGTCGAGATATCCCAGG
ACCGTGGTGTCAGTCATCATCCAGGTGATTGTTGACGACGGGGCTGTTCT
TAGTGCAGCTCTGAACGCTGCCACCATGGCCCTCCTCAACGCCGGGGTAG
AGATGACGGGCATGGCCCTCTCCGTCACCTGCTGTATCACCGCCCCGGTC
TCTGGCCGGTCCGTGCTCTTGGACCCGTGCAAGGCTGAGGAGATTGACGC
CGCCGCCACCGCGGTCGTCGCCACTCTCTCCGCCGGCGGTGGAGTCCTGT
CGTGCCGCGCCGTGGGTTCGATGAGCCAGGAGGAGTACTTCGCGTGCTGC
GAGGCGGCGTCGCTGGGCACGACGGCCGTGCGATCGTTCGTGAGGCTGTC
CGCAGAGCAGAAGGTCAACCGCGAAGCAGAGACTCTCAGATGA
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