mRNA_E_fasciculatus_S2_contig834.16476.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig834.16476.1
Unique NamemRNA_E_fasciculatus_S2_contig834.16476.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L263_9PHAE)

HSP 1 Score: 704 bits (1818), Expect = 1.810e-246
Identity = 383/450 (85.11%), Postives = 400/450 (88.89%), Query Frame = 1 
Query:    1 MTPYRKQRRWGLLRVVLAMAVGSIDLGAAVILVYNEGTTRFDDVPSMDNFGPRIPEEGFAGRLQLAQPNMYACSAIDGPTSTXXXXXXXXXXXKDAAGELNFGGATPASRTRSSNGVSRGMPLAVSRQRPRGEILEAASTXXXXXXXXXXXX-EEELPSAVLISRSEKDAPGGCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMPLPEVLQLPEVCVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPSTSTPPXXXXXXXXXXXXVITAPAMQAAHADGGERGNDGTGGDRLPLLSNSRGAPIGGGSIQDTSPV 1347
            MT Y KQR+WGLLRVVLAMA+GSIDLGAAVILVYNEGTTRFDDVPSMDNFGPRIPEEGFAGRLQLAQPN+YACSAI GP ST            +AAGEL+FGGA P SRTR+ +GVSRGMPLAVSRQ PRGEILEA ST     XXXXX   EE+LPSA LISRSEKD P GCTFE KVLNAQ AGFSMVIVYDS  +ENLFKMGRSSSKGAKHPKVEIPLVLV+HASG+AL+ALI + SDTRGPEVYVDNTD FGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPM LPEVLQLPEV VEEGSRLEGDSCP+CLEAYRIGD+LRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAP TS+ P  XXXXXXXX  VITAPAMQ AHADG ERG+DG GGDRLPLLSNSRGAPIGGGSIQDTSPV
Sbjct:    1 MTSYGKQRQWGLLRVVLAMAIGSIDLGAAVILVYNEGTTRFDDVPSMDNFGPRIPEEGFAGRLQLAQPNVYACSAISGPLSTTAVASATAV--NEAAGELDFGGAAPPSRTRAHSGVSRGMPLAVSRQPPRGEILEAVSTTAAATXXXXXAAGEEDLPSAALISRSEKDDPSGCTFETKVLNAQGAGFSMVIVYDS-REENLFKMGRSSSKGAKHPKVEIPLVLVSHASGLALKALIETASDTRGPEVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPPTSSSPSSXXXXXXXXAAVITAPAMQPAHADGVERGDDGAGGDRLPLLSNSRGAPIGGGSIQDTSPV 447
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P9_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.150e-42
Identity = 102/241 (42.32%), Postives = 143/241 (59.34%), Query Frame = 1 
Query:  463 ELPSAVLISRS-----EKDAPGGCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFG-MFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTN--RPMPLPEVLQLPEVCVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLT------------QRQRSCPMCKDPVT 1125
            ++P   LISRS      KD PG CTF  KV NA  AG ++ +V+D +  E LF+M R++  G      +IP VL++ +SG  L AL  + +D  GP V+VD +D +  MF ++++TM  +V GFL +LL C S+ + T HR LRRY+++       RP+ L + L++PE  V  G  LE DSC ICLEAYR+GD++  L C H  HA C+ PWL             +RQR+CP+CK  VT
Sbjct:   82 DMPVVALISRSLQSNMAKD-PGSCTFAQKVDNAWRAGAALAVVFDYV-DEPLFRMQRAT--GGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT 318
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: E3 (ubiquitin-protein ligase RNF13 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S1D5_9TREM)

HSP 1 Score: 107 bits (267), Expect = 4.580e-21
Identity = 81/223 (36.32%), Postives = 116/223 (52.02%), Query Frame = 1 
Query:  463 ELPSAVLISRSEKDAPGGCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVT-VDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMPLPEVLQLPEVCVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTL 1128
            +LP  VLI R      GGC F+ KV+NAQ A FS VIVY+++  E +F MG  S K      + IP V+V+  +G  L+A   S +D R  E  V     + + +  V L++ +LV   L+ L+ C +  +  + R +RR         R       LQ       E +R   ++CPICLE ++  D++R LPC HAFH  CI PWL + +R CP+C   V L
Sbjct:   33 DLPFIVLIER------GGCDFDLKVINAQKANFSGVIVYNTVPNE-IFPMGGGSYKDG----ISIPAVMVSKMAGEKLKAF--SVAD-RQKEFVVSMVSFYSLPLKYVLLSLLVLVGVSLIILIVCFAAHLCNMWRRMRRGRLSRRHLRR-------LQTKRF---EKARDPYETCPICLEDFKDRDKIRILPCHHAFHTRCIDPWLLRNRRRCPVCNQTVEL 231
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: RING-type (domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TB16_SELML)

HSP 1 Score: 102 bits (254), Expect = 1.660e-20
Identity = 80/228 (35.09%), Postives = 110/228 (48.25%), Query Frame = 1 
Query:  511 GGCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGT-------NRPMPLPEVLQLPEV---CVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCK-DPVTLTVGLAPSTSTP 1161
            GGC F+ K+LNAQ AGFS VIVY++    +L  M  SS        V IP V V+ ++G  L       S   G   Y+           ++ T + ++    ++LL   +  V+T   ++RRY     G+       +  M   EV  LP V   C+ +G     D+C ICLE Y  G++LR LPC H FHA C+  WLT R+  CP+CK D         PS STP
Sbjct:   47 GGCKFDEKILNAQDAGFSAVIVYNNEEGHDLISMSGSSDD------VRIPAVFVSKSAGETL----LEYSKQIGARCYI--------LPAIENTAWSVMAVSFISLLAVTA--VLTTFLFVRRYRLRHLGSRLLLLRDSYGMSAREVKALPTVIFKCLGDGQGTS-DTCAICLEDYESGEKLRVLPCHHDFHAACVDQWLTTRRPFCPVCKRDAHNKNEEPPPSESTP 253
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: RING-type (domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QVB4_SELML)

HSP 1 Score: 102 bits (255), Expect = 2.480e-20
Identity = 80/228 (35.09%), Postives = 110/228 (48.25%), Query Frame = 1 
Query:  511 GGCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGT-------NRPMPLPEVLQLPEV---CVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCK-DPVTLTVGLAPSTSTP 1161
            GGC F+ K+LNAQ AGFS VIVY++    +L  M  SS        V IP V V+ ++G  L       S   G   Y+           ++ T + ++    ++LL   +  V+T   ++RRY     G+       +  M   EV  LP V   C+ +G     D+C ICLE Y  G++LR LPC H FHA C+  WLT R+  CP+CK D         PS STP
Sbjct:   81 GGCKFDEKILNAQDAGFSAVIVYNNEEGHDLISMSGSSDD------VHIPAVFVSKSAGETL----LEYSKQIGARCYI--------LPAIENTAWSVMAVSFISLLAVTA--VLTTFLFVRRYRLRHLGSRLLLLRDSYGMSAREVKALPTVIFKCLGDGQGTS-DTCAICLEEYESGEKLRVLPCHHDFHAACVDQWLTTRRPFCPVCKRDAHNKNEEPPPSESTP 287
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.590e-20
Identity = 93/282 (32.98%), Postives = 128/282 (45.39%), Query Frame = 1 
Query:  394 GEILEAASTXXXXXXXXXXXXEEELPSAVLISRSEKDAPGGCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKH--PKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGM-FVTVDLTMFMLVTGFLLALLTCGSM-----MVVTLH---------RYLRRYESLVAGTNRPMPL--------PEVLQLPEVCVEEGSRLEGDSCPICLEAYR-IGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVG--LAPSTS 1155
            GE++ A+               +     VL+ RS  +    CTF  KV NAQ AG + VIV D      L +M R+  K  +H    + IP V VT  +G+ L+ ++A + +     +   N   + + F+T       LV+ F L L  C SM     MV  LH         R   R ++ V G    + L        P V   PE+C E        SC ICLE  R   D ++ LPCQH FHA CIT WLT+ + +CP+CK PV   +G  L PS+S
Sbjct:    1 GELILASPDSYLCTSDLDGNFTKHTKVVVLVFRSPIEDASTCTFSQKVGNAQVAGAAGVIVADQRRDSELIQMSRTQ-KEIEHGDDSILIPSVFVTTKTGIDLKNILAGSREIVSVLISQQNHSSWNIPFIT-------LVSSFGLILALCSSMIICAGMVTRLHHRPDIHAQNRRGNRLQNRVRGHRATITLDINVVDALPTVT--PELCGEGPC-----SCAICLEDLRGTSDSVKQLPCQHKFHAHCITEWLTRWKHTCPLCKHPVNSDIGSSLLPSSS 267
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: E3 (ubiquitin-protein ligase RNF167-like n=1 Tax=Vulpes lagopus TaxID=494514 RepID=UPI001BC95D53)

HSP 1 Score: 101 bits (251), Expect = 1.390e-19
Identity = 69/204 (33.82%), Postives = 101/204 (49.51%), Query Frame = 1 
Query:  514 GCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMPLPEVLQLPEVCVEEGSR-LEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1122
            GC F+ KVLNAQ AGF   +V++ +  + L  M R  ++  +  ++ IP V V  +S   L AL       +G +V +   D   + +   L  F  V G L+     G ++    H+   R   L              QL  +   +  R    D C ICL+AY +G+RLR LPC HA+H+ C+ PWLTQ +R+CP+CK PV
Sbjct:   56 GCDFDLKVLNAQRAGFGAAVVHN-VHSDALLSMARGGAEAQQ--QIAIPAVFVGESSAEYLRALFVYD---KGAQVLLVPDDN--LLLGYCLIPFTGVVGLLVVASGAGLVVRFVQHQGQLRRARLTRE-----------QLERIPTRDHQRGAPDDVCAICLDAYEVGERLRVLPCAHAYHSRCVDPWLTQARRTCPVCKQPV 240
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: E3 (ubiquitin-protein ligase RNF167-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI00186426D7)

HSP 1 Score: 102 bits (254), Expect = 1.540e-19
Identity = 71/203 (34.98%), Postives = 107/203 (52.71%), Query Frame = 1 
Query:  517 CTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMPLPEVLQLPEVCVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVT 1125
            C F+ KVL+AQ AGFS  IVY+  + + L  MG S  K A+  +++IP V  ++++   L++ I      RG   YV     F   +   L  F  V G +L ++   ++++V   +Y  R               ++ ++P    E+G   E D C ICL+ Y  GDRLR LPC HA+H  C+ PWLTQ +++CP+CK  VT
Sbjct:  103 CNFDIKVLHAQRAGFSAAIVYNMYS-DTLLHMGFSDEKIAE--EIQIPSVFTSYSAAQILKSFIIPE---RG--AYVILRPAFYFPIWYYLIPFSWVVGIILVVMV--TVLIVRCVQYRNRMXXXXXXXE------QLKKIPVHTFEKGD--EYDVCAICLDEYEGGDRLRILPCSHAYHCRCVDPWLTQTKKTCPVCKQRVT 287
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: RING-type (E3 ubiquitin transferase n=15 Tax=Metatheria TaxID=9263 RepID=G3VTW2_SARHA)

HSP 1 Score: 101 bits (251), Expect = 1.880e-19
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 1 
Query:  517 CTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMPLPEVLQLPEVCVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1122
            C F+ KVLNAQ AG+   +VY+ +    L  M  +S +  +  ++ IP V V   S   L +L       R   V  DNT   G +    L  F  V G L+  L  G+++VV   ++ +R +      NR +   ++ Q+P    ++G   E D C ICLE Y  GD+LR LPC HA+H+ C+ PWLTQ +++CP+CK PV
Sbjct:   92 CNFDLKVLNAQKAGYRAAVVYN-VNSNELLNMVWNSEEIQQ--QIWIPSVFVGETSSEYLRSLFVYDKGARVLLV-PDNTFPLGYY----LIPFTGVVGLLV--LAMGAVLVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHNYQKGD--EYDVCAICLEEYEDGDKLRILPCAHAYHSHCVDPWLTQTRKTCPICKQPV 275
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Match: receptor (homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9ARK4_PHODC)

HSP 1 Score: 100 bits (248), Expect = 1.900e-19
Identity = 76/221 (34.39%), Postives = 107/221 (48.42%), Query Frame = 1 
Query:  511 GGCTFEAKVLNAQAAGFSMVIVYDSITQENLFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVDNTDQFGMFVTVDLTMFMLVTGFLLALLTC-GSMMVVTLHRYLRRYESLVAGTNRPMPLPEVLQLPEVCVEEGSR--LEGDSCPICLEAYRIGDRLRSLPCQHAFHAGCITPWLTQRQRSCPMCK-DPVTLTVGLAPSTSTP 1161
            GGC F+ KV NAQ AGF   I+YD+     +F +G S         + IP V V+ ASG AL      T      E+++       +  T +L  F++   F+  L T  G  + + +HR   R+E   A     M    V  +P +     S       +C ICLE Y++G++LR LPC H FHA C+  WLT  +  CPMCK D  + T+ +  S STP
Sbjct:   58 GGCHFDEKVRNAQNAGFKAAIMYDNEDHPLVFAIGGSPDG------ITIPAVFVSKASGEALRKYAGLTD----MELWI-------LPRTKNLEWFIMAISFISLLATVIGLAVCLFVHRQHGRHERSRASEIHGMSSRLVEAMPSLIFISASEDNCTSQTCAICLEDYKVGEKLRRLPCHHKFHAVCVDSWLTAWRSFCPMCKQDCNSSTIYIPASESTP 261
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig834.16476.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type1.810e-24685.11domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
RING-type1.150e-4242.32domain-containing protein n=1 Tax=Tribonema minus ... [more]
E34.580e-2136.32ubiquitin-protein ligase RNF13 n=1 Tax=Fasciolopsi... [more]
RING-type1.660e-2035.09domain-containing protein (Fragment) n=1 Tax=Selag... [more]
RING-type2.480e-2035.09domain-containing protein (Fragment) n=3 Tax=Selag... [more]
Hypothetical5.590e-2032.98protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
E31.390e-1933.82ubiquitin-protein ligase RNF167-like n=1 Tax=Vulpe... [more]
E31.540e-1934.98ubiquitin-protein ligase RNF167-like n=1 Tax=Megal... [more]
RING-type1.880e-1936.14E3 ubiquitin transferase n=15 Tax=Metatheria TaxID... [more]
receptor1.900e-1934.39homology region, transmembrane domain- and RING do... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig834contigE_fasciculatus_S2_contig834:15689..22698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score686.8
Seed ortholog evalue6.8e-195
Seed eggNOG ortholog2880.D7FRI5
Model size2624
KEGG koko:K15692,ko:K15706
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-09_000080.1
EC2.3.2.27
Cds size1350
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig834.16476.1prot_E_fasciculatus_S2_contig834.16476.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig834 16963..22698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.504791-UTR-E_fasciculatus_S2_contig834:15688..169621696842493.504791-UTR-E_fasciculatus_S2_contig834:15688..16962Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig834 15689..16962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.5184495-CDS-E_fasciculatus_S2_contig834:16962..172891696842493.5184495-CDS-E_fasciculatus_S2_contig834:16962..17289Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 16963..17289 -
1696842493.5346248-CDS-E_fasciculatus_S2_contig834:17638..177531696842493.5346248-CDS-E_fasciculatus_S2_contig834:17638..17753Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 17639..17753 -
1696842493.5449743-CDS-E_fasciculatus_S2_contig834:19066..191621696842493.5449743-CDS-E_fasciculatus_S2_contig834:19066..19162Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 19067..19162 -
1696842493.5550127-CDS-E_fasciculatus_S2_contig834:19850..199991696842493.5550127-CDS-E_fasciculatus_S2_contig834:19850..19999Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 19851..19999 -
1696842493.5658793-CDS-E_fasciculatus_S2_contig834:20342..204711696842493.5658793-CDS-E_fasciculatus_S2_contig834:20342..20471Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 20343..20471 -
1696842493.5762846-CDS-E_fasciculatus_S2_contig834:21625..219881696842493.5762846-CDS-E_fasciculatus_S2_contig834:21625..21988Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 21626..21988 -
1696842493.5861075-CDS-E_fasciculatus_S2_contig834:22527..226981696842493.5861075-CDS-E_fasciculatus_S2_contig834:22527..22698Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 22528..22698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig834.16476.1

>prot_E_fasciculatus_S2_contig834.16476.1 ID=prot_E_fasciculatus_S2_contig834.16476.1|Name=mRNA_E_fasciculatus_S2_contig834.16476.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=450bp
MTPYRKQRRWGLLRVVLAMAVGSIDLGAAVILVYNEGTTRFDDVPSMDNF
GPRIPEEGFAGRLQLAQPNMYACSAIDGPTSTTAAAAAAAAAAKDAAGEL
NFGGATPASRTRSSNGVSRGMPLAVSRQRPRGEILEAASTTAAAASAEAA
AGEEELPSAVLISRSEKDAPGGCTFEAKVLNAQAAGFSMVIVYDSITQEN
LFKMGRSSSKGAKHPKVEIPLVLVTHASGMALEALIASTSDTRGPEVYVD
NTDQFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAG
TNRPMPLPEVLQLPEVCVEEGSRLEGDSCPICLEAYRIGDRLRSLPCQHA
FHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPSTSTPPSSSSPSSAAPAA
VITAPAMQAAHADGGERGNDGTGGDRLPLLSNSRGAPIGGGSIQDTSPV*
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mRNA from alignment at E_fasciculatus_S2_contig834:15689..22698-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig834.16476.1 ID=mRNA_E_fasciculatus_S2_contig834.16476.1|Name=mRNA_E_fasciculatus_S2_contig834.16476.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7010bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig834:15689..22698- (Ectocarpus fasciculatus EfasUO2)
ATGACACCCTACAGAAAGCAGCGGCGATGGGGTTTGTTGAGGGTCGTTTT
GGCCATGGCCGTCGGCAGCATTGACCTGGGCGCAGCCGTAATACTAGTGT
ACAACGAGGGCACGACGCGGTTCGATGATGTGCCGTCGATGGACAACTTC
GGCCCGAGAATACCAGAGGAGGTGAGTTGCACTAGGAGACTGCTGTTACT
ATTCCTTGTAAGCAGGATGGGTAACCGGAGGCAATGAGAACCCCGCCCTC
GCCCTTCCTCCATATCTGTAATCTCTGTCTGTCTCTGTGTCTCTCTGTTG
ACTATCACGGAAAGCGAGAAAGAGCGACATTGAAAGAAAAGAACCGCCTG
CTTATCTGCTTATCTGTAAGCAAGGCTGGCTCTCACATTCAATGTGATGG
TTGAACAGCTGAACAGCTCTTGAGCGTTTCGAACTTGGAACGGTCTTTGT
CTTTGTTCTCCTTGGTTGTGGCCTTGTCCTTTTGGACGTCACAAGTTCCA
GGAGTACTGCTGTAGTCACCCTTTGATAATACATCTCCCGTGCCGACGGC
ATAATAGCATGTCAAAATTCCACTTGCCTTCTACTTACACCCCCTGCAGC
TCGCGTTGCTGCTGCCTCAGCTTCTACCCCTGCCTCGCTGATGCCCCTAC
TATGTACATATCGCCTGTCGGAAACGTACTGGGTGCTGCTGTACGAACGA
AAATCCGCAGGGATTTGCAGGACGGCTCCAACTGGCCCAGCCGAACATGT
ACGCTTGTTCCGCCATTGACGGGCCAACATCCACCACAGCAGCAGCGGCT
GCAGCAGCAGCAGCAGCCAAAGATGCAGCGGGCGAATTAAATTTTGGAGG
TGCCACGCCAGCATCAAGGACCCGCTCAAGCAACGGGGTAAGCCGCGGTA
TGCCACTGGCAGTATCGCGGCAACGCCCCCGCGGCGAGATCTTGGAGGCG
GCTTCGACGACGGCGGCGGCGGCGAGCGCGGAAGCAGCAGCCGGAGAGGA
AGAGCTTCCTTCGGCGGTGCTCATCTCGAGGTCTGAGAAGGATGCCCCTG
GTGGGTGTACCTTCGAGGCCAAGGTGAGAGAGAGAATGGCGGTTTGAGCG
TGCGGCGTACTCATGTTTTGCGTGCCTTTAGCGGTTAGACCATTGACCAC
ACGTCCTCGAGAGGACGGAACATTGTTCCCACGTTCCCACAGGACCGATC
ACCGATCGCCGATGGGGAGGGGGGAGGGGGCTCATTGTTGCAAGAAGGCG
TGATGATCGGAGCACGGCAGTCGGTATGGATATGGAGGCGTGATCTATTG
TAGTGGTGGTCGTGGATTTTGGGGTTCGAATCTGCTGCGTTCCTGAACAA
GCTGGCTCAAACAATACCGATGTGAAACGTGACTCGCGGTATGCCATTTT
CCTTTTTCATTCTGTTTCGTGGTACAATCGACGGTGATAACCTCCCGACA
CCGCCATGCTACGCACTACAGCAGTGAGCCCTGCAAGCCAACAATCAACG
CTCCCCTTTGATCTCACGCACCACTCCTACTAGTCTATATTTTCGCATCC
CTTTCCATGGTCGTTTGCTCAGAACCATGTATGCATACTCTCTACCAGGT
GTTGTTCCTTAACCTTGAGAAAGCCCTTTAGTCTTTAGTCTTTAGTGGTA
TTATATTCTACTTATTGTTAAAAAAAATGAGCTTGGTGGATTGGAATTGC
CGAATGAAAGCGAGGGACGGCCGCACCCGTGGTCAGACGAAGGAAGAAGA
TGGTAACACAGACGTGCCCGTATGGCGAACGCAGAGGGAAAGTATGATGT
GCCATGCCTAACGGGATTATTAGAGCATTTGGTGGTTGTTTATCGTGACC
CCTTGACAAGGGACAAGGAAGGAGGAGAAGACTTGCCGTCGTCGGGGGGC
AAGACCAGAATAAGTAGAGGGGGATGTGGCGTGACGACATGAAGAGTTCA
AGTTTGGGGGCGTCTTGGGTTAGGATCAGGAACAGAGGTGCTCATTCTTC
GAAGCGTTGCTGCATGGCCAACAGTTGTCTAAGCAACAGAGAGGAAACAC
CCCGTATCTACGGCAGTGGCCAAGCGCGTTACTTTCCATGTAAAAAACAA
GGGAAGCACAAAATACCGCATCATGTGTTGACTTCTCGGAAGCACAGAGG
GGATTGATGACGTTGTCCAGTGCTGAACATTCACGACACGCGACACCCTC
CCACCGTTGTCTTTTCTACTCTGTTAGGTCCTGAACGCACAGGCTGCAGG
GTTCAGCATGGTGATCGTGTACGACTCTATTACACAGGAGAACCTGTTCA
AGATGGGCAGGAGCTCCTCCAAGGGCGCGAAGCATCCGAAGGTCGAGATA
CCGCTGGTGAGTGCGTGAGTGTCGTCTTGCATCGCGAAGACCGAAGACGG
TAATGTAAAGGCTTTGATGGCTGTTTTCTTGTGGCACTTTGTATTTTGTT
TTCGTTGGTTGCGTGAACTTGGCGCAGAATCGAACTCAACCTGCAGCAGG
CGACAAACGCTCTGTTTGGAGGATGGCTCCGTGGTGCAGTCGTCGTTTTG
CGTTGTATCCAACCACGTTTAGCCCTGGTTGTGGAATGACGGTAGGCTCC
GTCGTATTGAGCGCAATCTGATACACCGACACCAGCAACAACAGGAGAGC
AACAACTCGTATTGAGCAACGTTCGATCAACAAACCATCAAATCAACAGG
TGTTGGTTACGCATGCGTCTGGCATGGCTTTGGAGGCGTTGATCGCGTCT
ACGTCGGACACCCGCGGACCAGAGGTGTACGTTGACAACACAGACCAATT
CGGCATGTTCGTGACGGTCGATCTCACCATGTTCATGCTCGTCACCGGGT
AAGTGTTGGTTGAGAGATCGTGGGAGGAGGGGGTAACACCTCGTTTGGCT
GTTGCAACAAAAATGGGCAGGTGTAACGTCGTTGGGCATTGTTCACGGTG
GATCGCTGAGCTCTTGCTTCTAGCTTTTCTTTGCACCTGTTTGTTGGGCA
GCCTACGTGGGTCACAACAAACGCGTTTTCCAGGGGACTTGACGATGGCA
ATGGACAAAACTCTGTCGACGATTGTGCTGATTGTCTAGGCGGTTACGCA
CCTGCGACGCACTTGCCGAGAGGCTGAAGCGTTGCGCGTTGTGTGCACAT
TTTCGTTGTGTGTCACACTGCTGCACCGTGGTGCATTTTGGTTGTGGTCG
TGAGTGGCTTGCTGCTGCCTCACAAGCCTAAAGCAGCTGCTCGAGCGCTT
ACATAGACCCTCGGCGACATATGCTTCCATAACCTTCCCCACGTGGACGC
TGCGTACCAACATTTGCACAACCCGTCGCAGTTCCCAAGGAAAGTGTGGT
TTGACTGCTTACGGCGTGGAAAGAAGCTGCTACTGGTGCTGCTGACCTCG
GCATGCATGCACGTCCGAACACTACCACAATCTAAGGCATGCAGGCATGC
GATGTACGCTAGGTGACGGTGGCACAACATCCCAGCCTTGACTGAGGCTG
TAATTGTCTCGCATTTCTGGCTCGCATCGTTGGCAGGTTCTTGCTTGCGC
TGCTGACTTGTGGGAGCATGATGGTGGTGACCCTTCACCGTTACTTGCGC
CGCTACGAAAGTCTGGTGGCGGGCACCAATAGGTGATGTTTGGTTGGTCA
CAAGCAGAAGTTGTGGTGCACATGAAAACCTAGCGCTCGAATTAGCGTTT
TTGGCGACACTGGTTTGCCCGCACGTGCCCGTACCACATTGTGTTGTCAC
CAGCGTTCGACGGTACGTGTGATGGAGGTTTCCCGGACGGTAGTCTGTGC
TGTCGCCGTTTTGTGGCGTGATCTACGTCCTGCACGGCTAGGGATGCGTG
ATCGAGGAAGAAATACGGTAGCAGGAACAGTGGATACGGTATTGCAACCA
GCAGCTGCAGCTGTGGTGCCGCTGCTTGTTCCGGTTGCGTAGGCACTGTC
CTTGGTGCCGTATTCCTTCGTCGGTCACGCGTCCCTAGCCGTGCAGAACG
TATGCGAGCACAGGGGGTAGTAGAGAAACGTAATGGCCATGGAATATTCA
CAGGGGCACAACCGAGCGCAGACCGACATGAAGCTCTATGCCGCCGAAGG
TCTGCCTTTTTGTACCCTGATGTCGTGTCGATGGATGCAGCCATGTTGTC
TCTGTCAGAACATCACAAACCGCATCAAGTCCTTGCAAGACGTGCAGGTG
CTGAGAAATGTCCATCAGACCAGTTCGTAAATTGTTTTGCTACAATACCA
CCTCTACGCACAAACAAAATAATGATGCTTAGATCCCCAAGAGGTAGATC
CCGCATCATTTCGTTCTCCACTACCCGGTGTATACACCGTTCCTGCGGCC
GTACTTTCTGCTCGATCACGCACCCCTAGCCGTGGAGAACGTAGGCGAAC
ACGCCGGGTAGTCCGTGCCTCTTTCTGGTACCCGTGACTAGACCATTCGC
GATGTTACTTGCGCAACAGCCTTCGGCATGGCTGGTTCTCTCTTCAACGT
GGACAGACTATTTCGACAGTGCCCAGGTCAATCGTCACATTTGACAGACG
ATCAACCATGCGGCTCAGATCGATAAGCGAGCTAGACGCAAGTTTGTTGC
GTACGAAGAACTCAGATACATGTCCGTTCAGCATGTGGCCAAGGGACGCA
CACAATGCCGCCACCATGGCCCGTCGGCAGGGAAACGGGGCGATGAGCGT
TCCCCTCCTTCGGAGGAATGAAAGGCCGCAGGAACTTTCAGTCATACCAT
ACAAGTTTTGCGGAGATCGAAACTGTTTGTGCCAATTTGAGTGAATTTGT
TGTTCAAATGGATGCGATCCGTGGCAATAGTGTGCGACAGACTGATGGTT
GTGGTCTTGGCAATGTACGATGCGTATCTTTCGCTATCTTGCCTAGATCA
ATGACCTAACTATGCGGTCGCCGTAACATGCGATGCCGTTGTCAGGCCAA
TGCCTTTGCCCGAGGTGCTGCAACTGCCAGAAGTCTGTGTGGAGGAGGGG
TCTCGTCTTGAAGGAGACTCGTGCCCGATATGCTTGGAGGCGTACCGAAT
AGGGGACAGGGTGAGGGCTTCCCGGGGTATAGTCCCCTATTATAGTCCCT
TGCTCTTAAGTGGTAGCACTCTCGACGGCGACCTGTTGTCGTTCGTGGAC
ATTGTCACTGCTGAGTTTCGATTTTTTTTGTTCATCCGGACCGCGTATTC
CCCCAAAGGTACAACTCTCGTGATCGCACTCCAAATCGGCACGTTCTTGT
GGTTACCATATCCATCACCTCGCCCTCCCCCCTTCACCTTCCTTTATTAG
AGGTGTTGACTACGAAAACCAAGGAAAGTCGTCCCCCTTCCAAACTTGTC
GAGCAACTACTTAGCAACAAACGTGCGCCACCCCCTCCCCCGTGCGAATG
TATGCTCAGCTACGAAGCCTCCCCTGCCAGCACGCCTTCCACGCGGGGTG
CATCACGCCTTGGCTCACCCAACGTCAAAGAAGCTGCCCCATGTGCAAAG
ACCCGGTGACTCTAACGGTAGGGCTGGCTCCTTCTACGAGTACCCCCCCT
TCATCTTCATCTCCTTCTTCGGCCGCCCCCGCGGCCGTGATTACCGCACC
GGCGATGCAAGCTGCGCACGCAGACGGCGGGGAGAGGGGGAACGACGGTA
CCGGGGGCGACCGGTTGCCGCTGTTGTCGAATTCGAGGGGGGCACCGATT
GGCGGGGGGTCGATTCAAGACACCTCCCCGGTGTAGGTTGGTGGTGTGGT
GCTCCCCCACCAGTTTGCGGTTTTAATGATATGGAAAGCCAGGTCGGGAT
GGATCATGTACATGTGTAGTAGAGTGTTGGATGAGATATAGACTCCTTCA
AATATGGCATCTGTGTGAGCAAGGTGCAGAATACACGGCAGCCTTTGGTG
TAGAAACAAGACAACCCTGGCCTTATTGGTTCAGCGAGCGAGGACGCTCT
TCGGCACTCGAAGTGCGTTGTCAGCGCGACAGGTATGAGGCTACGTACAC
GAACCTCTGCAGCTCGGCGTGCCTGTCTTTGTTCGGTAGAGTGTGGGGCC
TTGATCATATTGTGGCGCGGGCTTCTCCCCCCCCCCACCTGTCGGGTTCA
ATTTACCGGCTTCCCCTCCCCCTTTCCCCCCTGCCGTCTTGGAGCCGCTG
AGACGTTGGCTCCGTCTTTCGTACATTCTTTGTTTTTCTCTTCACGGTTT
GTTTGCCTGTGGTTGGCGTATTACTCGAGTATGAAAGGGGCCGTTGAGAG
TTTTATGTAGACGACAGACACGCCATGGTGAGGGGGATTTCGGTGTTGGG
CCATGCCTTTGTACTGTAGAAGAGTAGTTGAGTAGGAAGCGAAGCTCTGC
CCGCTGGTATATGGGCGATCTTACGCCGCTGGTCGGGGCTATTTTTGTAA
AAATTGTTTTGGGCCGATAGATATTATACCGTTCTCCGTCATAACATTAC
GCGGGCTGCTGTAGTAAATTTACGCTACATGTCCATCGGTCTTGTCGTTT
GTACGAGAGGAGCTGCCCATCTTGCTTGTTGCTTGTACATTGTCGCGCAG
TGCATGCCTTCTGAGGGGGAACAAAGCAATCTGGAAAACTCGTTTTCCCG
TAATAGTAAATGGAGTGCAGGGCATGTTCGCTGTTTCGCTGGTGGAAGAA
GATTTTGTAGGCCGTGCTTCTTTCAACTTTTTTTTTTGCATCTCACCCGG
GTCCGCCTGTAACCACGCACATCGTTATTCACCATTTGTGTTTTTGGAGG
TGCTGCGTAAGGATACGGATTGTACGGGCGTTTTTGATGTGAAGACGACG
TCTTCCGGTCCGGTCCGCCGGTGAAAAGCAAACGAAAAAAGTACACACCG
GCGTTTGGTCAGGCAGGGAGACGCTAGCGACGCGCACGACAAACTAGGGT
TGTCCTCCCTGGGCTGTTTTTCTGTTACAATTATCCCACCACAGTCCAAC
ACGGGTACGTGCGACAAGCTTGTTCCGTCATTTTAGGGGTTGCTGCCCCG
GCCAACGTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig834:15689..22698-

>mRNA_E_fasciculatus_S2_contig834.16476.1 ID=mRNA_E_fasciculatus_S2_contig834.16476.1|Name=mRNA_E_fasciculatus_S2_contig834.16476.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1350bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig834:15689..22698- (Ectocarpus fasciculatus EfasUO2)
ATGACACCCTACAGAAAGCAGCGGCGATGGGGTTTGTTGAGGGTCGTTTT
GGCCATGGCCGTCGGCAGCATTGACCTGGGCGCAGCCGTAATACTAGTGT
ACAACGAGGGCACGACGCGGTTCGATGATGTGCCGTCGATGGACAACTTC
GGCCCGAGAATACCAGAGGAGGGATTTGCAGGACGGCTCCAACTGGCCCA
GCCGAACATGTACGCTTGTTCCGCCATTGACGGGCCAACATCCACCACAG
CAGCAGCGGCTGCAGCAGCAGCAGCAGCCAAAGATGCAGCGGGCGAATTA
AATTTTGGAGGTGCCACGCCAGCATCAAGGACCCGCTCAAGCAACGGGGT
AAGCCGCGGTATGCCACTGGCAGTATCGCGGCAACGCCCCCGCGGCGAGA
TCTTGGAGGCGGCTTCGACGACGGCGGCGGCGGCGAGCGCGGAAGCAGCA
GCCGGAGAGGAAGAGCTTCCTTCGGCGGTGCTCATCTCGAGGTCTGAGAA
GGATGCCCCTGGTGGGTGTACCTTCGAGGCCAAGGTCCTGAACGCACAGG
CTGCAGGGTTCAGCATGGTGATCGTGTACGACTCTATTACACAGGAGAAC
CTGTTCAAGATGGGCAGGAGCTCCTCCAAGGGCGCGAAGCATCCGAAGGT
CGAGATACCGCTGGTGTTGGTTACGCATGCGTCTGGCATGGCTTTGGAGG
CGTTGATCGCGTCTACGTCGGACACCCGCGGACCAGAGGTGTACGTTGAC
AACACAGACCAATTCGGCATGTTCGTGACGGTCGATCTCACCATGTTCAT
GCTCGTCACCGGGTTCTTGCTTGCGCTGCTGACTTGTGGGAGCATGATGG
TGGTGACCCTTCACCGTTACTTGCGCCGCTACGAAAGTCTGGTGGCGGGC
ACCAATAGGCCAATGCCTTTGCCCGAGGTGCTGCAACTGCCAGAAGTCTG
TGTGGAGGAGGGGTCTCGTCTTGAAGGAGACTCGTGCCCGATATGCTTGG
AGGCGTACCGAATAGGGGACAGGCTACGAAGCCTCCCCTGCCAGCACGCC
TTCCACGCGGGGTGCATCACGCCTTGGCTCACCCAACGTCAAAGAAGCTG
CCCCATGTGCAAAGACCCGGTGACTCTAACGGTAGGGCTGGCTCCTTCTA
CGAGTACCCCCCCTTCATCTTCATCTCCTTCTTCGGCCGCCCCCGCGGCC
GTGATTACCGCACCGGCGATGCAAGCTGCGCACGCAGACGGCGGGGAGAG
GGGGAACGACGGTACCGGGGGCGACCGGTTGCCGCTGTTGTCGAATTCGA
GGGGGGCACCGATTGGCGGGGGGTCGATTCAAGACACCTCCCCGGTGTAG
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