mRNA_E_fasciculatus_S2_contig834.16474.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig834.16474.1
Unique NamemRNA_E_fasciculatus_S2_contig834.16474.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig834.16474.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L022_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 4.660e-81
Identity = 149/177 (84.18%), Postives = 159/177 (89.83%), Query Frame = 1 
Query:    1 MNLLLHTLLLTVLLCLRACQAFVPSLKTPPASSQNALARAPTRSTTAHVGRRSRGQSRDASTGLTRLDMMFGRGKKKTPTLSEEDLATMAKSREEANKKIAIFLEKRRSDREARKEAEQAEQREKVANRVKAEKEEAEHNKVYIPQRLEEIEKEQAVLKDRMSAFNTKIKDKDIKDL 531
            MNLLLHTLLL+VLLCLRACQAF P LKT PASSQ+ALARAPTRS T   G RSRGQSRDA+T LTRL MMFGRG+   PTLSEEDLATMAKSREEAN+KI  FLEKRR+DR+ARKEAEQA  REKVANR+KAEKEEAEH+KVYIPQRLEEIE+EQAVLKDRMSAFNTKIKDKDI DL
Sbjct:    1 MNLLLHTLLLSVLLCLRACQAFAPLLKTFPASSQSALARAPTRSATVPAGSRSRGQSRDATTVLTRLGMMFGRGRNPPPTLSEEDLATMAKSREEANQKIENFLEKRRADRKARKEAEQAXXREKVANRMKAEKEEAEHSKVYIPQRLEEIEREQAVLKDRMSAFNTKIKDKDIGDL 177
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BLAST of mRNA_E_fasciculatus_S2_contig834.16474.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI6_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 7.150e-38
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:  265 MAKSREEANKKIAIFLEKRRSDREARKEAEQAEQREKVANRVKAEKEEAEHNKVYIPQRLEEIEKEQAVLKDRMSAFNTKIKDKDIKDL 531
            MAKSREEAN KI  FLEKRR++REARKEAEQAEQREKVANR+KA+KEEAEHNKVYIPQRLEEIE+EQAVLKDRMSAFNTKIKDKDI+DL
Sbjct:    1 MAKSREEANHKIDNFLEKRRAEREARKEAEQAEQREKVANRMKAKKEEAEHNKVYIPQRLEEIEREQAVLKDRMSAFNTKIKDKDIEDL 89
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig834.16474.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.660e-8184.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.150e-3889.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig834contigE_fasciculatus_S2_contig834:4641..9062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1214
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000100.1
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.2893782-UTR-E_fasciculatus_S2_contig834:4640..53201696842493.2893782-UTR-E_fasciculatus_S2_contig834:4640..5320Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig834 4641..5320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.300484-CDS-E_fasciculatus_S2_contig834:5320..54461696842493.300484-CDS-E_fasciculatus_S2_contig834:5320..5446Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 5321..5446 -
1696842493.3101559-CDS-E_fasciculatus_S2_contig834:6331..64541696842493.3101559-CDS-E_fasciculatus_S2_contig834:6331..6454Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 6332..6454 -
1696842493.3217793-CDS-E_fasciculatus_S2_contig834:7784..80091696842493.3217793-CDS-E_fasciculatus_S2_contig834:7784..8009Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 7785..8009 -
1696842493.3300066-CDS-E_fasciculatus_S2_contig834:9002..90621696842493.3300066-CDS-E_fasciculatus_S2_contig834:9002..9062Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 9003..9062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig834.16474.1prot_E_fasciculatus_S2_contig834.16474.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig834 5321..9062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig834.16474.1

>prot_E_fasciculatus_S2_contig834.16474.1 ID=prot_E_fasciculatus_S2_contig834.16474.1|Name=mRNA_E_fasciculatus_S2_contig834.16474.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=178bp
MNLLLHTLLLTVLLCLRACQAFVPSLKTPPASSQNALARAPTRSTTAHVG
RRSRGQSRDASTGLTRLDMMFGRGKKKTPTLSEEDLATMAKSREEANKKI
AIFLEKRRSDREARKEAEQAEQREKVANRVKAEKEEAEHNKVYIPQRLEE
IEKEQAVLKDRMSAFNTKIKDKDIKDL*
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mRNA from alignment at E_fasciculatus_S2_contig834:4641..9062-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig834.16474.1 ID=mRNA_E_fasciculatus_S2_contig834.16474.1|Name=mRNA_E_fasciculatus_S2_contig834.16474.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4422bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig834:4641..9062- (Ectocarpus fasciculatus EfasUO2)
ATGAACCTTCTGCTGCACACTCTTCTGCTCACGGTGTTGCTATGCTTGAG
GGCGTGCCAGGTAAGATCACTATCCTGCTCCGAAGCCCATATTTGAACGG
CAAACTGCAGCTCGGCGGTCAGCATGCACGTGGTCGCATGTTCGCTGTGT
ACGGCAGCAGTAGTCTACAACTGTACCATGTAGTCTCCCGAGCTACACTG
AGATGTACAACTGCTGTACGTCCATCACCTGGCGAAGTCTTGTAGTGTCG
CATTGCGCAGAGCGTCTGAGAAATTTATTCGCTCGGCCTCCTGACATGAG
CTCACGAGGCACACATAGAGACAGCAGCAGCTGTACAGCACTACAACGAG
CGAGCAGTACTACGGACGGTACTGCTGTTGTAGGGCGTACTCTGCTTTTG
TAGTGTACAGAACACGCCTCTGAGTTTGCCTGGCACAGATGATGCCAGGT
ACAACACTGCTGCTGTGTAGAACCCTACCCTCAGGGGAGACATGGCCGTT
TTGCTGTTGGTCATCATATGCATGTACATACGACGCTTGAACCCACTGCA
AATCTATCCCGAACTACTGCTGTTGCGCAGAAATACCCGGACAGGAAGAG
ACGGCACTGTAGCGTAAGAAACAGGTACTACATGTATAATACTCGCAGTT
GGCTTGTGACCACGGAAGGCATCAGTTGGACCAGTACGGGCACTAGAAGG
CACTGAGCGGAGACCAGAACGATTTGTTAATGTGAAGACGACAACAACAA
CAACAAGAACAACAACAACAACATCAACTACTGTACCTGGTGCAGCAGTA
CATAAGTCTACAGCACGGTCTACAGCAGCGGTTAACGCTACTTGCGCCTG
CGTACCGCATGGCTTTTGAACAGAGAGGCTCACCACTTTGGCTTAAAAAG
CCATGCATTACGGCAGTGTACCAAGGCGCTTGTAGGGTCTATGTGTGTAG
AATGCTGCTCTGCTGGACCAACATGCTTTTGAGCGGGGTCCGGTATTTCC
GTCCTTCGTCTCGCTCACACCGCCGTGCACCACACCACTTGCTGCAATCG
CAGGCCTTTGTTCCCTCGCTGAAGACACCACCTGCATCGTCTCAAAACGC
TCTCGCACGGGCACCTACTAGGTCAACAACAGCACACGTAGGGAGGAGAT
CAAGGGGACAGTCTCGAGATGCATCAACTGGGTTGACTCGACTGGACATG
ATGTTCGGTCGTGGGAAAAAAAAAACACCGACGCTATCGGAAGAGGACCT
GGCTACGATGGCCAAGTCTAGAGAAGAGGTGAGCGACGAACATCATCAAC
AGCTCCGGCGACTGTTTCGTGTGACGCCTATATCCGATGAAAAGTTGTTT
TACCATCATTGCGTGCATAACTGTACCTTAGCCCTACCACGGGTCGTGCA
CGAAAGTGTGCATGCAACGTGTTCGGGCGACCGTGCTACATGATCAGGTT
ATTGTATCAGGATGGTAAAATTCAAGAGTGTGTTTAGTAAAGTATACTCA
CACTCAAGTATTTCTTAGGAATTACTCAACCTTAGTAAGCCCTTGGTAAG
TATTAATCTCAACAGTTTGAGTAAGTGTTCTTACAATACTAATCGTTACT
CAGGAGGTTGACTAAGTATTTTCAAAACTACTCATGCGTACTCAGATGCT
TGAGTATGTTACTCAACATTCAGAGTATCCTTGAAGTATTCAAAGCCTTT
AGTAAGTATTCCAAATATTATCATCCGTGCTCAAGCGTTTCAGTAAGTAT
TTGAAAGCTACTCAGCCGTACTCACCTAACCGAGTTTGAGTATTCTTACT
CACAATACTCTGAGTACGGCGTTTAGTAATACTTATACTTTACTAAACAC
GCCCTTGGTAAAATTGTACATGCTGGGGTGGTTACTTCTACGCAAGTGTT
TTTCAGCTCTTGTAGCTCTCGTTGCGGTAATTTGCTTAGGGAGGCGCAAC
GCCCAGTCCCAAGTTTGCTGTGGTAAGGCATCGCCATTGGCGTCGCCCTC
GCGGTCGAAATGTACGTACAAACCTCGGAAGCTTTGGTCGAGGTCGTGGG
TTCGATTCCCGGCAAGGCTCTCCATTGTTGCCTAAGAGGGTGTCATTCTG
TGAAAATCCTGCAAACCCCGTTTGGATTAGGCAAATGGGTTTGCTACAAC
TGCACGACGCATGACCCTTCTTGTGAAAAAAACGAAGGCGCACACCACGA
GCTGAGACGTAAGAAGACCCTCTAGCTATTCAGGTTTCGGCTGGTGATCA
GACGGTAACACCCTAGCAGCCGAAGTATGTAACGCGTGCTTCCATTCATC
AGGGCGCCGTCGTGCATGAAGCCCATGCAGTGGTGAGCCATGAGAGCCCA
AGGCACTCCATAACTTCCTAATAACCAGATAGCACTTGTACCACTCCCCG
GGGGCTCCGTGTATCGTACCCATCGCTGTTTACATCAAACACCCGCTGTT
CATGCACATATCCAAGTTTACGTGCACGCCGACCTCGTTCCGTTGTCGAC
AAGGTAAGGATGCCAAGGCGAGTTTCCTCCATCTGTTTCTACCGTCCAGT
CTTCCCATCGGTGACGTCCGCTTGCGACGCTTACGCTCTCCGTCGTTCTT
GTTTCCAGGCCAACAAGAAAATTGCAATTTTTTTGGAGAAGAGGCGGTCG
GATAGAGAAGCCAGGAAAGAAGCGGAGCAGGCGGAGCAGCGCGAGAAGGT
CGCGAACCGCGTGAAGGCCGAAAAAGAGGAGGTGAGTCAAGGGTGTTGTG
TGTTTGTTCGTGATGCTCCTTCCCGAAAAGGTTACTTCGGACGTTGGTCG
TCAATACTATGAATCGAATCGAATCGTATCGGTTTGTGAGTGGAACGGAA
CAAGCGTCCCCTCATGTAATGTAGTACGTCAAGGGGAGGGACGAACGGCG
TTCGGGCCGACAAGGAGAGTGAAGGGAACTGGCCGACAAGGAGAGTGAAG
GGAACAAGGACTGGCCCTGAATCATTTCGTAGAGGGAACGCGTGGCAGTC
ACTTCCTTCTCACATTTTGCTCCCGATGCCAAGTCCGGATGTTGAGGATT
CAGTGCTTGAAAGCGGGCAGGGGGAAATATCTCCCTCCCATTCAGGTTCA
CTACAAGTCGTTGTGAAGAAGCGCTCGTGAACCTGGGAAACTTGCCTCTT
TCTGGGAACCTTGCCTCGTGTAGTTTCGCGGATACTGCTGCAGTTGGAGT
AAGGCTTGCAGGCTGCCTCGGTTACATCTTTGACTCTCCTTCGTTTAAGA
TGCTTGCGCAATTCACAGCAGAGTTACGGGTGGGAGAGCAGCAAGCCACA
GGTGTAATAAACACAAACTACCCCGCGAGAGCAACAAATAGGCAGAAACA
CGCGACGTGGTCAAAAGATCCCGTGTACTAACCACGTTTAGGTGCGAACT
GAGATAGTCTTGAGCTTGCCATGTGGCACATGGACAGGCGGAGAATAACG
TGGATAGGCATACCCTACCCCTGCTGAACTACAGAAACAGGAAGAAGCCG
CCATGAAAGTGGCATGGTGAACGGTCGTACGAAACGCATACCGTATGGTT
ACCTGCGATAAACGAACCCTGAGATGCTCAAGGACGGACTGCTTTTTTTC
CCACCACATTTTGCAGGCCGAGCACAACAAGGTCTACATCCCGCAACGAT
TGGAGGAGATAGAGAAAGAGCAGGCCGTGCTGAAAGACAGAATGTCCGCT
TTCAACACCAAGATTAAAGACAAGGACATCAAGGACCTGTAGGACCTGTA
GCTTTTAGGGTTTAGAAGTTTCCCCGTATTCTGTAAGAGCGCCTGTGTTT
TTGGTGCGTCGGTAGTGTTGGAACGTACCCCTCGGAGATCATGGCCTGCT
TCAAAAGACTACCCTCGGTGCTATAGGACCAAAGCACGGTTTCACAACCT
CATCAACTCTGGATGCACCTTTGTCGTAGAAATGGCTGCCGGTACTTTCG
CGCTATAACGTATGCAAAACTGTTGTCTGTGGTGGGAAGTAGCGGTGGTA
GTGTCGCTGGACTAGGATGCATCACGCATCCATGTTCAGCGTTATTACAT
GCGAGCACGAGAAAGTTGTCATCTTCCTTATTCAGTTGTGCTTCCCGGGC
ATGAGGCATGAGGCATGATGTGTCTGTCGCGATTATACCAGCAACCAACT
GCGGGCATCAAGCACATGGCTCGAGTATCTGGCACCCCCTGGGTCAAGGC
TTCTTGTTTTGTTGTCCATTCTGTATTGCACTCCTGCCCTTGACGCGTGG
ATGAGCATCAATGTAGAAATTGTGGGAAAATAGTCAACGGTCATCTGAGT
GACACCGTTTCTTCGTGCGATCTCTTCCTCGGATCGGATGTCAACACCCG
CGTATCATTGAGATATAGTCTTGACACGCGGGTACTACACTGCCAGGGAT
CGAATGATGACATATCCCAGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig834:4641..9062-

>mRNA_E_fasciculatus_S2_contig834.16474.1 ID=mRNA_E_fasciculatus_S2_contig834.16474.1|Name=mRNA_E_fasciculatus_S2_contig834.16474.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=534bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig834:4641..9062- (Ectocarpus fasciculatus EfasUO2)
ATGAACCTTCTGCTGCACACTCTTCTGCTCACGGTGTTGCTATGCTTGAG
GGCGTGCCAGGCCTTTGTTCCCTCGCTGAAGACACCACCTGCATCGTCTC
AAAACGCTCTCGCACGGGCACCTACTAGGTCAACAACAGCACACGTAGGG
AGGAGATCAAGGGGACAGTCTCGAGATGCATCAACTGGGTTGACTCGACT
GGACATGATGTTCGGTCGTGGGAAAAAAAAAACACCGACGCTATCGGAAG
AGGACCTGGCTACGATGGCCAAGTCTAGAGAAGAGGCCAACAAGAAAATT
GCAATTTTTTTGGAGAAGAGGCGGTCGGATAGAGAAGCCAGGAAAGAAGC
GGAGCAGGCGGAGCAGCGCGAGAAGGTCGCGAACCGCGTGAAGGCCGAAA
AAGAGGAGGCCGAGCACAACAAGGTCTACATCCCGCAACGATTGGAGGAG
ATAGAGAAAGAGCAGGCCGTGCTGAAAGACAGAATGTCCGCTTTCAACAC
CAAGATTAAAGACAAGGACATCAAGGACCTGTAG
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