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Homology
BLAST of mRNA_E_fasciculatus_S2_contig833.16471.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL38_ECTSI) HSP 1 Score: 380 bits (977), Expect = 4.830e-127 Identity = 222/354 (62.71%), Postives = 235/354 (66.38%), Query Frame = 1
Query: 13 MRARLVAGLLLAAYLGLFATPVTAEKTHSTPFKIGNMSANAVARTTTVSSLVDKLSTPPAPGFFQVEALTXXXXXXXXXXXXXXXXXXXXNLEASLLLDLLAAGDSSCPHKDNITRDLGNGNAGGKDTTSTLDSYSLGSCSDIYNLCFESCSVGKGLFKNNNKPTEGSCHVVCTVAQEGCQSCSKKQHKRSMIAILQGLVRVVSTAVYWMCYLLAVIGCCVGTIAWLVVGLFYSGPTMPLFSWAESWLPPAILVVIFNPFVVMGVIAWSVHRVWLDPSSVLLKLWQFVSNQAPFSAALLGWAVHVSYIRRRMGRLRQEVQRRSVFKVRQGQDVDGHVYIDLREAV--PEETRRV 1068
MR RLVAGLLL AYL LF TPV AEKT STPFK+GNMSANAVART TV+SLV EAL N EASLLLDLLAAG+SSCP KDNITRD G N+ GKDTTSTL+S+SLGSCSD+Y LCFESCSVGKGLFK N P EGSCHVVC VAQEGCQSCSKK +KRSMIA LQGLVRVVST VYWMCYLLAVI CCVGTIAWLVVGLFY PT+PLFSWAESWLPPAI+V VSYI R+M RLRQEVQRRSV KVRQGQD DG VY+ LREAV EETRR+
Sbjct: 1 MRTRLVAGLLLVAYLELFTTPVMAEKTRSTPFKLGNMSANAVARTPTVTSLV--------------EALVTNAQISTKRVASVLKEIEPPNPEASLLLDLLAAGESSCPQKDNITRDFGTENSAGKDTTSTLESHSLGSCSDVYELCFESCSVGKGLFKKKNTPAEGSCHVVCAVAQEGCQSCSKKHYKRSMIATLQGLVRVVSTVVYWMCYLLAVITCCVGTIAWLVVGLFYWEPTVPLFSWAESWLPPAIVV--------------------------------------------------VSYIHRQMDRLRQEVQRRSVIKVRQGQDEDGQVYMALREAVVADEETRRL 290
BLAST of mRNA_E_fasciculatus_S2_contig833.16471.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ8_9PHAE) HSP 1 Score: 246 bits (628), Expect = 5.680e-74 Identity = 118/143 (82.52%), Postives = 123/143 (86.01%), Query Frame = 1
Query: 346 DNITRDLGNGNAGGKDTTSTLDSYSLGSCSDIYNLCFESCSVGKGLFKNNNKPTEGSCHVVCTVAQEGCQSCSKKQHKRSMIAILQGLVRVVSTAVYWMCYLLAVIGCCVGTIAWLVVGLFYSGPTMPLFSWAESWLPPAILV 774
DNITRD G GN GK TTSTL+S+SLGSCSD+Y LCFESCSVGKGLFK NKP EGSCHVVC VAQEGCQSCSKK +K SMI LQG+VRVVST YWMCYLLAVI CC GTIAWLVVGLFY PTMPLFSWAESWLPPAILV
Sbjct: 7 DNITRDFGTGNTAGKGTTSTLESHSLGSCSDVYELCFESCSVGKGLFKKKNKPAEGSCHVVCAVAQEGCQSCSKKHYKGSMITTLQGMVRVVSTVAYWMCYLLAVIACCFGTIAWLVVGLFYWEPTMPLFSWAESWLPPAILV 149
BLAST of mRNA_E_fasciculatus_S2_contig833.16471.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW32_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 3.510e-16 Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 1 MRFLMRARLVAGLLLAAYLGLFATPVTAEKTHSTPFKIGNMSANAVARTTTVSSLVDKLST 183
MRF MR RLVAGLLL AYLGLF TP E+T STPFK+GNMSANAVART TV SLV+ L+T
Sbjct: 1 MRFPMRTRLVAGLLLVAYLGLFPTPAMGERTRSTPFKLGNMSANAVARTPTVISLVEALAT 61
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1515 |
| Hectar predicted targeting category | signal peptide |
| Exons | 8 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-05_006770.1 |
| Cds size | 1515 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842492.9570973-CDS-E_fasciculatus_S2_contig833:11616..11819 | 1696842492.9570973-CDS-E_fasciculatus_S2_contig833:11616..11819 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 11617..11819 + |
| 1696842492.9689355-CDS-E_fasciculatus_S2_contig833:11906..12048 | 1696842492.9689355-CDS-E_fasciculatus_S2_contig833:11906..12048 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 11907..12048 + |
| 1696842492.9789348-CDS-E_fasciculatus_S2_contig833:12571..12783 | 1696842492.9789348-CDS-E_fasciculatus_S2_contig833:12571..12783 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 12572..12783 + |
| 1696842492.9943898-CDS-E_fasciculatus_S2_contig833:13395..13612 | 1696842492.9943898-CDS-E_fasciculatus_S2_contig833:13395..13612 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 13396..13612 + |
| 1696842493.0049393-CDS-E_fasciculatus_S2_contig833:14211..14361 | 1696842493.0049393-CDS-E_fasciculatus_S2_contig833:14211..14361 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 14212..14361 + |
| 1696842493.0154128-CDS-E_fasciculatus_S2_contig833:14604..14657 | 1696842493.0154128-CDS-E_fasciculatus_S2_contig833:14604..14657 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 14605..14657 + |
| 1696842493.0327451-CDS-E_fasciculatus_S2_contig833:15480..15571 | 1696842493.0327451-CDS-E_fasciculatus_S2_contig833:15480..15571 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 15481..15571 + |
| 1696842493.0451348-CDS-E_fasciculatus_S2_contig833:15979..16426 | 1696842493.0451348-CDS-E_fasciculatus_S2_contig833:15979..16426 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig833 15980..16426 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig833.16471.1 >prot_E_fasciculatus_S2_contig833.16471.1 ID=prot_E_fasciculatus_S2_contig833.16471.1|Name=mRNA_E_fasciculatus_S2_contig833.16471.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=505bp
MRFLMRARLVAGLLLAAYLGLFATPVTAEKTHSTPFKIGNMSANAVARTT TVSSLVDKLSTPPAPGFFQVEALTTNAQIHTKRVASVLEELETPNLEASL LLDLLAAGDSSCPHKDNITRDLGNGNAGGKDTTSTLDSYSLGSCSDIYNL CFESCSVGKGLFKNNNKPTEGSCHVVCTVAQEGCQSCSKKQHKRSMIAIL QGLVRVVSTAVYWMCYLLAVIGCCVGTIAWLVVGLFYSGPTMPLFSWAES WLPPAILVVIFNPFVVMGVIAWSVHRVWLDPSSVLLKLWQFVSNQAPFSA ALLGWAVHVSYIRRRMGRLRQEVQRRSVFKVRQGQDVDGHVYIDLREAVP EETRRVRDTIARPNTRGRTHGNTTTDSTQVTTNENGGDIVNDSGNNIDSN ADNDNKDVSDDNDTADNDTTDNDDNDNGNGNSNDNDNDTTDNDDDSSSGN NDNVNAGQEDNDNNDGNTANANANANEDDNDGDDTTSSTATTPTNVGANE DIEE* back to topmRNA from alignment at E_fasciculatus_S2_contig833:11617..16426+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig833.16471.1 ID=mRNA_E_fasciculatus_S2_contig833.16471.1|Name=mRNA_E_fasciculatus_S2_contig833.16471.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4810bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig833:11617..16426+ (Ectocarpus fasciculatus EfasUO2) ATGCGCTTCCTCATGAGGGCCCGTCTAGTTGCTGGCCTTTTACTGGCGGC
ATACCTTGGGCTGTTCGCCACACCCGTCACGGCCGAGAAGACTCACAGCA
CGCCGTTCAAGATCGGGAATATGTCTGCAAACGCCGTCGCGCGGACCACC
ACGGTTTCCTCACTGGTCGACAAGCTCAGCACGCCTCCCGCACCCGGCTT
CTTGTCAAGGTTGTTCTTCTGGAGGGCATCATCTGCGAAGGCTGTCAATC
GTGTCCGATTCCGCTTTTTCCCCTTTCCCCATTTCTACAGCCAAGTCGAA
GCGCTGACAACCAATGCCCAGATCCACACGAAGAGAGTTGCCTCTGTCCT
CGAGGAACTCGAAACCCCCAACCTAGAGGCCTCCCTGCTGCTGGACCTCC
TGGCTGCGGGTGATTCGTCGTGCCCCCATAAGGTATGCGTACCGCTTGCG
CCTGCATCGCGCATAATCCCCAGGATTTCTATCCCATTTCCGCCTGATCA
CACGCAGTATACTTTCACTGCCCTGTTGTGCACGCGTCATCATGGAAGCC
CCGTTTCGAACCCAGGTGACATTCGGGCGAGTCCATCTTCTCGCTGACTA
TTGCTTTTTGGAGGAAGCCCCCGTCCAGCTCATTCACCTGCTGCAATTTG
TCAACGCTGTTTGTCGTCGCTGGATTTCAATATTTCCACCGCACTGATGT
GTCAACAAGTATTCTTTTCCCGCTCTGTGTTTTTTTTTCTGGAGTGCTCT
GCCGAAGCAGGTTGTACCTCTTGGTACATGAAATCGTTCTTGTTCGCAAA
CCGCGACACCCCGGATTTACTGTCTTCATCAGGGATTACGTACCCTCCAC
TCGCTCTTACTCTGCTGCACATGCTTTCCCGACCCCCTTGGAATCGACAC
GATCCGGCCCGTGATCTCCAACGTTGCATTGGGTTCCTGCTTCTGTCAGA
AACAGGACAACATCACGCGTGACTTGGGCAACGGGAACGCTGGTGGCAAG
GACACCACATCGACCCTGGACTCGTATTCTCTCGGGTCTTGCAGCGACAT
CTACAACCTTTGTTTCGAGTCGTGCTCCGTCGGCAAAGGCCTCTTCAAGA
ACAACAACAAGCCCACTGAGGGATCTTGTCACGTCGTTTGCACCGTAGCC
CAGGAGGGTTGTCAGAGGTACGCGGCACTTCATGTCGGATTTACTGACGA
TTTGCGCTCGTGATTTTTGGAAGGAATCTTTGACTCTTGGGAAGTGTTTT
GGTGGGGCCTCTCCTCCCTAAAATGAGGGTAAGACAGGAGATGCTTCGGG
TCAAACATTTACATACGCCCAGAACAACCACATGTCAATTCCGACACAAG
TTCAGGTACATCGCTTTGTTGTTTTCAAGTCAAAGAGTTTTCTCGACACT
GTGTACGAAATCTTCCACCCTTTGCAACCTTCAACCGAAGATGGAGAACA
AGAAGGACGTCTGCCTCCGGCTATCTACACAGAAAAAATGTCGATAAACA
TGGAAATTGGGAATTATCAATCGACCGTGCCGACAGGTAAAATATTAATC
TCAATTTTTCCGACAGCAAACGCATCCAATGCAAGGCTCTACAATATGTG
ACCTTCCTTCCTACAAGCCTCCACTCGCACTCTTGAGGCTGTGTGCGCTG
CACACCGTTCACCTTTTACTCGGTTGAGCGGGTGAGTTGACTCATGCACC
CCGCGCATGTGCGCCATTCAACCCCCCCCCTCCCCTTGGTTTGTGCAATA
CACCAAACGCAAACTCCACGTCCGATCAGCTGCTCGAAGAAACAGCACAA
GCGCAGCATGATCGCCATCCTGCAAGGCTTGGTCCGCGTCGTGTCCACCG
CGGTCTACTGGATGTGTTACCTTCTTGCAGTCATCGGTTGTTGCGTTGGC
ACTATCGCCTGGCTCGTGGTCGGCCTGTTCTACAGTGGACCGACCATGCC
CCTTTTCTCGTGGGCCGAGTCTTGGCTGCCTCCGGCGATCCTGGTGGTAA
GACACGACATTCACTGTTTGTTGTGTGTCTCGGTTGTTGATGATGATGAT
GATGGTGGTGGTGCCGTCGTCGTTGTCGTTGCCGTTATGTTTGCTGTTGT
CGCCATGGTACTTGTGGACAACCTCACTTTGGTCTTTGGCAGCACAGGCA
TTTTAAGGCCATGCACTGCAAGACAGCCTATGTAACTGTCAGCGCCCCCC
GGTGATACAAGACAACCTATCCGTCAGCGTTCCCTCTACCCCTGTTGCGG
AGGGTTTACTCTCGACCAAGCCCACGGGGCCCGTGTCAGGCTCTACGATA
GACGTATTTCCAATTTCGTTATCCCTAGCTCTCTTCTGAGCACGTGGAAC
AATGAGTATCTTCTTCTGGTCGTTTCGTTGCAGTGTGTAGTCTTGCAAAG
CGCTTCTGAATATGACCGTCGGAGTTGAAGGCTTTTGTTTCTTCCAGAGC
GTCCCCCGCAACTCTCGTTCTGAATAGGAATCATCGCATGTCAACATCAA
TAATGACAGGTGTCGTTCCCCTTCTCCGCTGCGAGTTCATAACCTCCTTC
GCCATTGTCCTCTGCGAACGCGCACTCCGTGAACGTGCGTAATAGGTGAT
TTTCAATCCTTTCGTCGTGATGGGCGTCATCGCGTGGTCTGTTCACCGCG
TCTGGCTCGATCCTTCCTCTGTCCTTCTCAAGCTCTGGCAATTCGTTTCC
AACCAGGCTCCCTTCTCCGCGGCACTCCTCGGCTGGGCCGTGCACGTGCG
TTGTTGTCAGTACCATCTGACGGCGTCAAAGTTGTGGTATTATGCAACAT
ACATGCCTGCGTCATGCAAGGACCAAGAGAATGCAAATAGGTGTCGACGT
CACACGGGAAAAACTTTATCTACTACAGGTACGGCGGTGACTCTTCACCA
AAGTACTTCGACCAGCGTCTCAACAACCAACCGTAGCCCTACGCTTTCGA
CCCCAACGCGGTGCCCAACATATACCCATTCTCAACAGGTTTCCTACATC
CGTCGCCGGATGGGCAGGCTTCGGCAGGAGGTCCAGAGGAGGTAAGCGAA
TTTGACAGTTATGTCTTCCACCACATGCGCCACCCGAAAATCAAGGTTTC
GCAGCGGTGTGCTTATTTCCGTCGCGGTTTGTATGTATGTCTTTGACGGT
AAGCACACATCATAGCATATGCACCTATCGACGTGCGTCTAGGATAGTTT
CGTTTGCCACAAATTCAGGCCCAAGAACTTTTTCAAGCTCACTCACTCAC
TCACCCACCTCCACACATTGGTGCCGCTTACATGTGATAATCCAACTCCG
GATTGTTTGTAGGTACCAACGCGACGCAGGGACCGCCTCCCAATTCGGTG
TGGTTCCACGCGATTCAGATTGTTTCATTCTCTCACGACATTCCAAGGCC
ATCACCTCAGTGCCACCCATGACGCATGTCGACGGGGGTTCAACGCTGCG
GTTGATACATACGATTCCCTCCTGGCGTTTCCCATGACTCTCTATGTCCC
TTCACACCTCGATCTATTTCCACTTTTTTGGGCCGCTCAAGTATAGCCTA
GGCCTACCTTTCTGTTGTGTCTCTGCGTGCCAGCTCTCATGGACAACCCT
CCTTGCTATTGTCCGAATCCTGTGAATGTCCGCCTGACCGCTGCACGAGT
GGTGCAATTCGGTCGCACGTAAAGCAACTGTTTCCCTTGAATCGCTCCCT
TGGTGTTTATTTTCTTCCCAGAGCTTCTTTGGAGTTTTAGTCTTCGAACT
CATAACACCATCCAACTCCAGCTTTCTGCATCGGAGGGCTTGTTTCTCAC
ACTCGTTTGTCGATCGGTAGCGATATCTAGACTTCGTCCGCTTTCGTTCC
TGTTGGGTGTACAGAAGCGTCTTTAAGGTTCGCCAAGGCCAAGACGTGGA
CGGCCACGTCTATATCGACCTGAGGGAAGCGGTCCCTGAGGAAACCCGTC
GCGTGGTGAGTTGCCATTTCAAGAAATTTCGTTCAAGACATACGTAGATT
CCTCCCCATCAAATGTTGGGATTGCGCCGCGCAAGACACACGAGAATACA
CATCCTATCCACTATCAAGTGCGATGTTGGGGCGATGTTGGGTGAGTAAT
TATGATACAGCCAACAACGGAGAACGCGTACAACATGAATATATGTCTTG
ACTTTCAAGTCTTAGAAATACCGCGATATCGATGTTTGGCCTATAGCAGG
TCCTTGTAGAATCTTGTCGGGTATTTACACGATTGCGCACTAAGACGGCT
GCTACCACAAATTAGAGTCGTAATCATCGACGTGCAGAAGAGGATCAACA
CACCGTGATAGTTCTTCGATCTTGACTCTCTCGTTACGATTTTCACGCCT
TTTCGGGTGGCAGCGAGACACGATCGCAAGGCCCAATACCCGCGGAAGGA
CCCACGGGAACACCACCACCGATAGCACCCAAGTCACCACCAACGAAAAC
GGCGGTGATATCGTCAACGACAGCGGAAACAACATCGACAGCAACGCCGA
CAACGACAACAAAGACGTAAGCGACGACAACGACACCGCGGACAACGACA
CTACTGACAACGACGACAACGACAACGGCAACGGCAACAGCAACGACAAC
GACAACGACACCACCGACAACGACGACGACAGCAGCAGCGGCAACAACGA
CAACGTCAACGCCGGCCAGGAGGACAACGACAACAACGACGGCAACACCG
CCAACGCCAACGCCAACGCCAACGAGGATGACAACGACGGCGACGACACC
ACTTCCTCCACCGCCACGACCCCCACCAACGTTGGTGCCAATGAGGACAT
CGAAGAGTAG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig833:11617..16426+ >mRNA_E_fasciculatus_S2_contig833.16471.1 ID=mRNA_E_fasciculatus_S2_contig833.16471.1|Name=mRNA_E_fasciculatus_S2_contig833.16471.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1515bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig833:11617..16426+ (Ectocarpus fasciculatus EfasUO2) ATGCGCTTCCTCATGAGGGCCCGTCTAGTTGCTGGCCTTTTACTGGCGGC ATACCTTGGGCTGTTCGCCACACCCGTCACGGCCGAGAAGACTCACAGCA CGCCGTTCAAGATCGGGAATATGTCTGCAAACGCCGTCGCGCGGACCACC ACGGTTTCCTCACTGGTCGACAAGCTCAGCACGCCTCCCGCACCCGGCTT CTTCCAAGTCGAAGCGCTGACAACCAATGCCCAGATCCACACGAAGAGAG TTGCCTCTGTCCTCGAGGAACTCGAAACCCCCAACCTAGAGGCCTCCCTG CTGCTGGACCTCCTGGCTGCGGGTGATTCGTCGTGCCCCCATAAGGACAA CATCACGCGTGACTTGGGCAACGGGAACGCTGGTGGCAAGGACACCACAT CGACCCTGGACTCGTATTCTCTCGGGTCTTGCAGCGACATCTACAACCTT TGTTTCGAGTCGTGCTCCGTCGGCAAAGGCCTCTTCAAGAACAACAACAA GCCCACTGAGGGATCTTGTCACGTCGTTTGCACCGTAGCCCAGGAGGGTT GTCAGAGCTGCTCGAAGAAACAGCACAAGCGCAGCATGATCGCCATCCTG CAAGGCTTGGTCCGCGTCGTGTCCACCGCGGTCTACTGGATGTGTTACCT TCTTGCAGTCATCGGTTGTTGCGTTGGCACTATCGCCTGGCTCGTGGTCG GCCTGTTCTACAGTGGACCGACCATGCCCCTTTTCTCGTGGGCCGAGTCT TGGCTGCCTCCGGCGATCCTGGTGGTGATTTTCAATCCTTTCGTCGTGAT GGGCGTCATCGCGTGGTCTGTTCACCGCGTCTGGCTCGATCCTTCCTCTG TCCTTCTCAAGCTCTGGCAATTCGTTTCCAACCAGGCTCCCTTCTCCGCG GCACTCCTCGGCTGGGCCGTGCACGTTTCCTACATCCGTCGCCGGATGGG CAGGCTTCGGCAGGAGGTCCAGAGGAGAAGCGTCTTTAAGGTTCGCCAAG GCCAAGACGTGGACGGCCACGTCTATATCGACCTGAGGGAAGCGGTCCCT GAGGAAACCCGTCGCGTGCGAGACACGATCGCAAGGCCCAATACCCGCGG AAGGACCCACGGGAACACCACCACCGATAGCACCCAAGTCACCACCAACG AAAACGGCGGTGATATCGTCAACGACAGCGGAAACAACATCGACAGCAAC GCCGACAACGACAACAAAGACGTAAGCGACGACAACGACACCGCGGACAA CGACACTACTGACAACGACGACAACGACAACGGCAACGGCAACAGCAACG ACAACGACAACGACACCACCGACAACGACGACGACAGCAGCAGCGGCAAC AACGACAACGTCAACGCCGGCCAGGAGGACAACGACAACAACGACGGCAA CACCGCCAACGCCAACGCCAACGCCAACGAGGATGACAACGACGGCGACG ACACCACTTCCTCCACCGCCACGACCCCCACCAACGTTGGTGCCAATGAG GACATCGAAGAGTAG back to top
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