mRNA_E_fasciculatus_S2_contig8326.16467.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8326.16467.1
Unique NamemRNA_E_fasciculatus_S2_contig8326.16467.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8326.16467.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS4_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 5.510e-46
Identity = 176/227 (77.53%), Postives = 180/227 (79.30%), Query Frame = 1 
Query:   73 QGKSYLRVYPLSGETPGVTHFIGVLENLDTAQAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGENSSGLEAGASEXXXXXXXXXXTAKGRVKFHDGSSGSGXXXXXXXXDDGTGARHHNHTGARSSRLTSNNSMSMTTGSDGGFSSSSHSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGASSPAAQSGGRVPKRGR 753
            +GKSYLRVYPLSGET GVTHFIGVLENLDTAQAA+ XXXXXXXXXX                      KGGE+SSGLEAGASE           AKGRVKFHDGSSGS   XXXXXX      RHH HTGARS+RLTSNNSMSMTTGSDGGFSSSSHS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGASSPAAQSGGR PKRGR
Sbjct:    3 KGKSYLRVYPLSGETLGVTHFIGVLENLDTAQAARQXXXXXXXXXXGPSSIGEGPISSSAASSPTAAAKGGEHSSGLEAGASEGETSSDSASSAAKGRVKFHDGSSGSSGSXXXXXXX--XXXRHHTHTGARSARLTSNNSMSMTTGSDGGFSSSSHS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGASSPAAQSGGRPPKRGR 226
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8326.16467.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.510e-4677.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8326contigE_fasciculatus_S2_contig8326:4189..6785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size759
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003405.1
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842492.4940257-CDS-E_fasciculatus_S2_contig8326:4188..45111696842492.4940257-CDS-E_fasciculatus_S2_contig8326:4188..4511Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8326 4189..4511 -
1696842492.5042908-CDS-E_fasciculatus_S2_contig8326:5451..58111696842492.5042908-CDS-E_fasciculatus_S2_contig8326:5451..5811Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8326 5452..5811 -
1696842492.5142522-CDS-E_fasciculatus_S2_contig8326:6709..67851696842492.5142522-CDS-E_fasciculatus_S2_contig8326:6709..6785Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8326 6710..6785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8326.16467.1prot_E_fasciculatus_S2_contig8326.16467.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8326 4189..6785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8326.16467.1

>prot_E_fasciculatus_S2_contig8326.16467.1 ID=prot_E_fasciculatus_S2_contig8326.16467.1|Name=mRNA_E_fasciculatus_S2_contig8326.16467.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=253bp
GVLHSVLQDIREWRVSSTVVDDPSQGKSYLRVYPLSGETPGVTHFIGVLE
NLDTAQAAQQQQQQQQQQPGPSSAAEGPISSSSSSSSPTAAAKGGENSSG
LEAGASEGETSSDSASSTAKGRVKFHDGSSGSGGSSGSGGSDDGTGARHH
NHTGARSSRLTSNNSMSMTTGSDGGFSSSSHSNSGSGSGSGSGSHSGCET
RRSSRRSSSGNGNGNAGGGGRSGGKSADKSSGAGASSPAAQSGGRVPKRG
RS*
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mRNA from alignment at E_fasciculatus_S2_contig8326:4189..6785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8326.16467.1 ID=mRNA_E_fasciculatus_S2_contig8326.16467.1|Name=mRNA_E_fasciculatus_S2_contig8326.16467.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2597bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8326:4189..6785- (Ectocarpus fasciculatus EfasUO2)
GGCGTGCTGCACTCGGTCCTGCAGGACATTCGCGAGTGGAGAGTCAGCTC
GACAGTCGTGGATGATCCAAGCCAAGGTGAACATCGTTTTGCGTTTTGTG
GCTGGTGAATGACTGAATATATTCCTAGGCTGAACATGAAATGTGTCGGT
GCATAGGTCAATTTCAAGACTGAACAGCCGCCGCTTTACCATCACTTAGC
TCCACGCTGCGGACGTGCAAGCCAGAGTATTTTTTTATCCACCTTCGTCG
TGATGGTGTCTCGTGGCTTGTGAAGGTAAGATGTAGCTAAATAGTTTGAC
TATCATCAAGTTATGTCGCCGCCTTGTGTGCTTTTTGGGGAGACCCGCCG
ACGATTCGAAGAGACTTGCAGGTAGATGTATATGCTTTTGCTCTCACGGC
AAGATTCATACCTCTTCACTGGTCTTTCTTGTACGCGCGGCATCGATTGG
TCCAAGAAGCAGTGATCAGTGCCTCCATGTTTTGTGCACTGGGCACGCGG
TGGCGTTTCAAGATAGGCAACATCACCACTACTTGAATCTTTACTCGATT
GGTCCAAGAATCAGTGATCAGTGCCTCCATGTTTTGTGTACTTGGCACCC
AGTGTCGTTTGAAGATTCACCAGAACACCCCTATTATACCTGTACTGTAC
GTTGTATCTTGACCTAGGCAGCCCGTGCTCTCCCATAGCATGGTGGCCAG
CAGTAACAGAAACGCCATGCTGTCTCTGACCGCCGGGTTATGCGAAGGCT
ACCGTCGCTTGGTATGTGTAGTTTGTTCCTGGGATGCCGCCTATCACAGC
ATTCATGAACAAGCGGCGATGAGTGAAAGCCCCGATCCTCTCTCTCTCGC
TGTCTGTCGCTTCCCGATCCTCTCTCTGTCGGTTGCCTTCCTGTCGCTGT
CCTCTCTCTCTTATATCGTTCTCTCTCCCTCCCTCCCTCCTTGCTTCCCT
CCCTCCCTCCCTCCCTCCCTTCAGGCAAGAGCTACCTCCGCGTATACCCC
CTAAGCGGAGAAACCCCCGGCGTGACACACTTCATCGGCGTCCTCGAAAA
CCTCGACACCGCCCAAGCCGCACAGCAGCAGCAGCAGCAACAACAACAAC
AGCCTGGACCATCTTCTGCCGCCGAGGGACCCATCTCATCATCATCATCA
TCATCATCGCCTACGGCTGCCGCGAAGGGGGGGGAGAATTCTTCTGGGCT
GGAGGCGGGAGCATCGGAGGGGGAGACTTCGTCGGACTCGGCTAGCTCCA
CGGCGAAAGGGCGCGTGAAGTTCCACGACGGCAGCAGCGGGAGCGGAGGC
AGCAGCGGAAGCGGCGGCTCGGACGACGGTACAGGTGTGTTGTTTGTCGT
TGTTGTTGTTGTTGTGGTCGGGAGACCATACTGTAGGGAAGCACACAGGC
TCACCGATCGCCGCGCGATCAACAGAGAGTGACGTTCCCACTACAGCTCT
GATCTGATCGTCAGGAGGTTGGCAGGCACCACTGTTTTGGTTTTTCCCCG
CCCACCGTCCCTTTTGTTTTGTTTTCCGAAGGAGGGTGAGAAGGGTTCTA
CTGCAAGATGTACATGTACAAGTTGTATGTTGTTTTTGTTGTTGCCGGCG
TGATGTCGAGTCGAGTCGAGGCGTAGTTGGAAGCTCTTCAAGAAATGATT
CTAGGGAGCCCCACGCGCTGGTTCTGTGATGTGGAGGTGCAGTTTGAGGC
GGTTTCACGTGAATGTCTCACGAGTTTTTTTTTCTGGGCCCGTGTGAATG
ACGCCTATATACGTCTTTCTGCTTCTGCTGAGGTGTCTTCTAATGTTGAT
TGTGACAGTTTTTGTTTCTTCAGTATTGCGGTCGCTCTTGAGCGCCGGGG
GATTGAAGTATCTCCCATCACACGAGACGAACGATACGGAGGAGGCTTGA
GCGTCTTGACTGATGAACAGCTTTGAACAGCTTTGAACAACTTCGAACAG
CTTTGACTGGGTTTGACCCAAAACGTGCCCGGTCGTCTCTCTCCCTCTCG
CCCGCTGCTACTTGGTACAGTGTGCTTGACCGTCTCTGCCACCCTTCACT
CCCGCTAACCCTTACGCATTCTCTTGAAAGTTCATTGTGCGTATCCACAT
CGGAGTGCTATTATAGTCTAGCCTTTTAGTCCGCCCCCCTTTTGGCCTCC
ATAGCGAAACCGCGCCGCTGCTGGGCTCACCCAAGACACATGGAACCTGT
TCCCCGGCTCCTTCCACCATCCGAACTGAAACCCATGGCATGGCATGTCA
TGTCATGTCATGTCATGACTACAGGCGCCCGCCACCACAACCACACGGGG
GCAAGGTCTTCCCGGCTGACGAGCAACAACAGCATGAGCATGACCACGGG
CAGCGACGGAGGTTTCTCGTCCTCGTCGCACTCCAACTCGGGGTCTGGGT
CTGGCTCCGGCTCCGGTTCCCACTCGGGCTGCGAGACTCGCCGCTCGTCA
CGGCGTAGCAGCAGCGGTAACGGTAACGGTAACGCCGGCGGCGGCGGCCG
CAGCGGCGGGAAAAGTGCCGACAAGTCTTCCGGTGCCGGCGCTAGTAGCC
CGGCGGCACAGAGCGGTGGACGCGTGCCCAAGAGGGGCCGGTCCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8326:4189..6785-

>mRNA_E_fasciculatus_S2_contig8326.16467.1 ID=mRNA_E_fasciculatus_S2_contig8326.16467.1|Name=mRNA_E_fasciculatus_S2_contig8326.16467.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8326:4189..6785- (Ectocarpus fasciculatus EfasUO2)
GGCGTGCTGCACTCGGTCCTGCAGGACATTCGCGAGTGGAGAGTCAGCTC
GACAGTCGTGGATGATCCAAGCCAAGGCAAGAGCTACCTCCGCGTATACC
CCCTAAGCGGAGAAACCCCCGGCGTGACACACTTCATCGGCGTCCTCGAA
AACCTCGACACCGCCCAAGCCGCACAGCAGCAGCAGCAGCAACAACAACA
ACAGCCTGGACCATCTTCTGCCGCCGAGGGACCCATCTCATCATCATCAT
CATCATCATCGCCTACGGCTGCCGCGAAGGGGGGGGAGAATTCTTCTGGG
CTGGAGGCGGGAGCATCGGAGGGGGAGACTTCGTCGGACTCGGCTAGCTC
CACGGCGAAAGGGCGCGTGAAGTTCCACGACGGCAGCAGCGGGAGCGGAG
GCAGCAGCGGAAGCGGCGGCTCGGACGACGGTACAGGCGCCCGCCACCAC
AACCACACGGGGGCAAGGTCTTCCCGGCTGACGAGCAACAACAGCATGAG
CATGACCACGGGCAGCGACGGAGGTTTCTCGTCCTCGTCGCACTCCAACT
CGGGGTCTGGGTCTGGCTCCGGCTCCGGTTCCCACTCGGGCTGCGAGACT
CGCCGCTCGTCACGGCGTAGCAGCAGCGGTAACGGTAACGGTAACGCCGG
CGGCGGCGGCCGCAGCGGCGGGAAAAGTGCCGACAAGTCTTCCGGTGCCG
GCGCTAGTAGCCCGGCGGCACAGAGCGGTGGACGCGTGCCCAAGAGGGGC
CGGTCCTAA
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